Array 1 13277-11445 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJOP01000016.1 Lactobacillus helveticus strain FAM14499 FAM14499_scf0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13276 32 100.0 35 ................................ ATTGATAAAAGACTGATACATGTGGCGAGTAACCT 13209 32 100.0 35 ................................ AAAGACGTGTGAATGGTCAATGGATCTTGTACAAG 13142 32 100.0 34 ................................ GTATTCCAGCCAAAGCAGATGGCTTTGCCACCTA 13076 32 100.0 35 ................................ ACCGGTGAATCGTAAATGTTAATCGAGCCACCAGC 13009 32 100.0 34 ................................ ATATGAATTCCTTGGCTAGGGCTTTGAGCACTGA 12943 32 100.0 35 ................................ TTTCTACTGGTTTACCATCTGGGTTTCCTGATCTT 12876 32 100.0 35 ................................ TGCAGAAGGTTAACAAACTTAAGCCAGATTATCTT 12809 32 100.0 35 ................................ AGTGACGTGCCATCAGTTAACCAAAAATGTACCTA 12742 32 100.0 34 ................................ CATTGACTGTTAGTGTCAATGAGATGGATTTAAA 12676 32 100.0 35 ................................ AATTAAGTATAATCATAGGGGCAATAATTGCTTAT 12609 32 100.0 36 ................................ ATTCAAAGGAAGTGGTTTAAGAAGTGAAAATTGATC 12541 32 100.0 35 ................................ ATAGCGCTATTAACAAACAAGTTATGCAACCGCTT 12474 32 100.0 34 ................................ TTTTGACTTTTGCTTGTTACGACTAATCAGGAAA 12408 32 100.0 35 ................................ AATCTATGTAAATAAGAAGTGTCAGAAGTTAAGCC 12341 32 100.0 34 ................................ ATATGCGTCAGTTTCGCTTTCATGGTTAAAGCAT 12275 32 100.0 35 ................................ ACTAATGGAATATCCTTCATGCGCAAGCCTGTAAA 12208 32 100.0 34 ................................ TTTAGTGAACAAACTCCGTTGCGATACCGTCACT 12142 32 100.0 35 ................................ TAAAATACAGTTGACTTTTTAGAAGATTTAAGTAA 12075 32 100.0 35 ................................ TAATATCTGTGAAGCAAACAAGGATCACTTCCTTG 12008 32 100.0 34 ................................ TTAAACGCCTACAAAGAACGTCACAATGCAAACA 11942 32 100.0 34 ................................ CCATTAAATAATCATTACTTGTATTAAATAAAGT 11876 32 100.0 36 ................................ GTTTTCGGGTGTCGGGTTTAATGGAGTGGTATCGGC 11808 32 100.0 34 ................................ ATCAAAGCTATCCTGCTATTGCTGATGGCTGGTG 11742 32 100.0 34 ................................ AGTTTTTGAACGCAATTCATTACCCGGTTTTTTC 11676 32 100.0 34 ................................ ACTAATGAAGTAATCAGTAAGGTGTTGGGTTACA 11610 32 100.0 35 ................................ TACTTAGATGCTGAAATGAACTTAGACCCGTGGAT 11543 32 100.0 35 ................................ AAGGATATTGACGGTACTGTGTTTGAAGTTTTCGG 11476 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGGGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCTGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //