Array 1 4189-2327 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZSV01000056.1 Pseudomonas sp. BAY1663 contig000056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4188 29 96.6 32 ............................A GCCGTGAGTTTGATTGCTGAAGCTCACCCTAA 4127 29 100.0 31 ............................. TAGGCGGCGTCCTGCGGCACCTTGCGTCGTT 4067 29 100.0 33 ............................. CACTCACGGAAGCGGCCGGTGTTGCGTGTCGGG 4005 29 100.0 32 ............................. TGCTCGAAGAACTCGGCGTCCGTGCGGCTGTT 3944 29 100.0 32 ............................. TAGCTCTTGGCTTCGCTCAGTGCGGTCCGCAT 3883 29 100.0 32 ............................. CGGCGCGGATATTCATTCAAGCCGCGATGAAC 3822 29 100.0 32 ............................. ACGCCAGTAGCTGACCAGGGCCTGAGACGACT 3761 29 100.0 33 ............................. GCCTCTTCGGCCTCGTCGTCGGCGCGGCCGAGC 3699 29 100.0 32 ............................. AACACTTGCTTGCCCTTGGTCAGGTACTCGGC 3638 29 100.0 32 ............................. TTCGGCGTCTCGACCGATGCGGCCAAAGTCTG 3577 29 100.0 32 ............................. TCGTTGATTTAGAAGGGAATGTCGTCGTCGAA 3516 29 100.0 32 ............................. TAAGAGCCGGTGCCGTCCTTATCGTCGAAGCG 3455 29 100.0 32 ............................. CCCCAAAACGGCACGTAGGGGAAATGCCGGTG 3394 29 100.0 32 ............................. GCGATCAGCCTGCCCATGCCGCCAGCCACAGA 3333 29 100.0 32 ............................. GGTCACTGCGAAGCCCCGCCACCATGCGTAGC 3272 29 100.0 32 ............................. TTGATGTGGCCACCCAGACCGATGGAGTGACG 3211 29 100.0 32 ............................. CGTATATCGCCGACGGCGTGATCACCGGCCCG 3150 29 100.0 32 ............................. GCGCGGGAGATAGCCGGCAAATTCAACGACTG 3089 29 100.0 32 ............................. TACCCTCCGCTCTGCGCTGGAGACCGGTTCGG 3028 29 100.0 32 ............................. GTCCTAATGGTAGTACCACAGCTCACGCTGCT 2967 29 100.0 32 ............................. GCCTCGGCGCCCTCGAGCGCTGGGAGCGCCGC 2906 29 100.0 32 ............................. CAGATGCTGGCATGGTGGGCCGAGGGCTCTAA 2845 29 100.0 33 ............................. GTGGTGAAGGTGCCGATCTACGTCGTGGTCGTC 2783 29 100.0 32 ............................. GATTCGTTCGGTGGTTGGGCCAATGCCGGCCG 2722 29 100.0 32 ............................. TCACTCCAGTCGCCCGCCCTGCCACCGTAGGG 2661 29 100.0 32 ............................. CGATTTCGCACCGCAAAAGGCCTCAGCCAGAA 2600 29 100.0 32 ............................. TCAACGTAGCGTTCGCGGACCAGGCGCTCGAC 2539 29 100.0 32 ............................. TCGAAAACCGGTACCGCATTCGGCCTGGAACT 2478 29 96.6 32 ............T................ AACGCGGACGGCTGCACAATCATGATCAACTC 2417 29 100.0 32 ............................. CTGGATTGGTGGGACGGTGTTTGGAAGCGAAG 2356 29 93.1 0 ..............T..........T... | T [2333] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GAAGATCATCCCCACCATCGAAGATGTGCTGTCCGCCGGCGGCATCTCGCCGCCCGAAGCGCCGCCCGAATCCGTACCGCCTGCCATCCCCAACCCTGAAAGCATCGGCGAAGCCGGGCACAGGACGCAGTGATGAGTTTTCTCGTCGTGGTCACCGAAAACGTGCCGCCGCGCCTGCGTGGCCGTATGGCCATCTGGCTGTTGGAAGTGCGCGCGGGCGTTTATATCGGCGATGTCTCCAAGCGCACCCGGGAAATGATCTGGGAGCAACTGCGCGAAGGACACGAGGACGGAAATGTGGTGATGGCTTGGGCGAGCAATCATGAGTCCGGCTACGAATTCCAAACCCTCGGCCCCAATCGCCGCCTCCCCGTGGAGTTCGATGGCCTGCATCTGGTTGCCTTCCATCCGCTGGAAAATTCCGATCTTTAACAAGGAAAAAAGCTGGTAGATTTTTAGCGGCCGATTTTTCCCTTGAAGATTAATTGGTTACGCTAAGT # Right flank : CGTTTCTCGAACGGAGCAGTGGCCATCTCGACTGAGATGATGAAGCTGCACTGAACTGACGTTCGCCCCCGACTACTCGCCAAGAATGCCCGCGAGCAGCCGGCGATCGATGTTCGCGCCGCTGAGCACCACCGCGATGCGCTCGCCCTGGTTGCGCTCGCGCTCCTGCATGGCACCGGCCAGGGCGGCGGCGCCGGCGCCTTCGGCGGTGTTGTGGGTGTCTTCGTGGAGCGCCCTGATCGCTTCGCGGATGGCCGCGTCCTCGACGCGCAGGATGCGTGCCGCGCCCGTTCGTATGATGTCCAGCGCCTCGGGGGCCGGCATTCGGCAGGCCAGGCCGTCGGCGAAGGTCTCGGCCGTCTCGGTGCAGACGATGCGGCCCTGTTCGAAGCTCTGCGCGTAGGCATCCGCGGCGCTGGACACCACGCCGACGATTTCCGTCTCCAGGCCCAGCAGGTCGCGGGTGCGGATCATGCCGCAAATGCCCGAGCCCATGCCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14778-16392 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZSV01000056.1 Pseudomonas sp. BAY1663 contig000056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14778 29 100.0 32 ............................. CCGCTTCGTCCACCGCCGACAGATGGGCAACG 14839 29 100.0 32 ............................. GCCATCGAGATAACCCGGCTCACCCGCCTTCG 14900 29 100.0 32 ............................. GTTGCAACGTACTTTTCGGTGATCATACGGTA 14961 29 100.0 32 ............................. CAATCCGACTTGCCTAGGCCGGCGTCTATCAG 15022 29 100.0 32 ............................. ATCGCCGTCGGCGACGGCCACCGCCTCGATCT 15083 29 100.0 32 ............................. GCATCGGCCGGGTCTTCCGTGCCGTCCTTGTT 15144 29 100.0 32 ............................. CGCAGGCCACCGGTATAGCTGACGGACTTGCT 15205 29 100.0 32 ............................. TACAACGCCTTGGTCGCCTCGCTCCTGCGACA 15266 29 100.0 32 ............................. CCGAGAGCGGCGAGCAACGCCAGCAGCAATGG 15327 29 100.0 32 ............................. GACGGCCACGTGTTCGCCGAGATGGGCAAGCG 15388 29 100.0 32 ............................. TCTGCTGGGCGAGTTCGCCCACCACCCCAGCC 15449 29 100.0 32 ............................. GCCACGTCGCAGATCAACTCTGCTGGCTCAAG 15510 29 100.0 32 ............................. CCATCAGCGATGTGCTGGAGGAGATGGCCGGT 15571 29 100.0 32 ............................. GACGGGCTGCTGCGTGTGTGCTCGACGGAGAT 15632 29 100.0 32 ............................. GATGTGCATGGGTTACCTCAGACGATTGGGTC 15693 29 96.6 32 ...................A......... TTTGGGTCGACTCCGGTCTCAGCCTGCATGCA 15754 29 100.0 32 ............................. GCGTTTCACGAACAGCCCATGCAGCGGCTGTG 15815 29 100.0 32 ............................. AACTCAAACAAGTCCTTGAGCATCCCGCCCCA 15876 29 100.0 32 ............................. CCGTGCTGGAGAAGCGCGCCACGCTGGACCAG 15937 29 100.0 32 ............................. CCCAAGAAACCCAAGCCGGCGGCATTCCAGGA 15998 29 100.0 32 ............................. TTGGTACCGACCTGGGCCTGGTGGCTCTGCGC 16059 29 100.0 32 ............................. GTCGTGAAACCATAGGTCGTCCAGCTCCAGGA 16120 29 100.0 32 ............................. GTCCACCGGATTTCCGCGTGGGTCGCCTTGTT 16181 29 96.6 32 ............................A TAGAACGTCGCACCGATCTGCCGGCTCTTGAG 16242 29 93.1 32 ..A...........T.............. CAGGGCGTGATCTTCGCCCGCAACCGCGACAG 16303 28 93.1 32 ............-.T.............. AAAGAGCGTGACCAACTCAAAGACGAAATTGT 16363 28 82.8 0 A.C.........-...........C..G. | AC [16385] ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.6 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GGTAACGCTCAGTGAACGGGCGGGGAAGGCCAAACCCAGCCCTTCATCGGTTTGCCGCCCCTCGGACCACTTATCCTGAAAACCGGGGATAGCCTTGCCGAAATCATGTAACCCCACCAGACAGGCCACCCAGCGCGCCACCTGCGCTCGCTCCAGCCCCAACGCCCGAGACGCCCAATCCAGCGTGCTCGCGGGCTCATGCGCAAGCATCCGCTCGGCCACCGCCGCCACATCCAGCAAGTGGGCCAGCACGCCATGACCAAAGCCCTCACCACTCTTGGCCCAGAGCCTACGAGCCGGGTCGCCCAGATCAGAGAATCCTTTCATCACATGCCTCATCCGTCTTGCGATACGCGACTATGGCATACCTGACAAGATCAAATTGCCACTACTATTTGTGGCGGAGTCAAGCTCGATCTTTAACAAAAAAACCAGAAGGAAACCTCGGTAGATTTTTGGCGTTCGATTTTTCCTTATAGGATCAATCGCTTACGCTAAGA # Right flank : GACCGGACAGGGCGCGGTCCATACAAGACAACACCAAGCTGCCGGCCCCCAGTCAAACCAGCTGCGGCGCGCTACGCTCCAGCAGGGCATCGATATCCAGCCCCCGCGGCAGTGTGCCGTAGACCCGGCCGCGGCCTTCGAGGCGGCTGGCGAGGAAGGCGTCCGCTACGGCGGCGTTGCCCGCTTCGAGCAGCAGCTTGGCCTGCAGGGCGACCGCCACGTCTTCGGTGAGCTGGCGGGCGCGGTACTGGATGTCGTCGGTATCGCCGAAGGCGCTCTGCAGCCGCTGGATATGCGCCCGCAGCCGGGCATCGCCATGGCCATCGCCGAGTTCGGCGAACAGCGCTTCGAGCACGCCGGCTCTTTCGACAGGGCGCGCAGCACGTCCAGGCACTGCACGTTGCCGGAACCTTCCCAGATGGAGTTGACCGGCGCTTCGCGGTACAGCCGCGGCAGGATGGTTTCCTCGACGTAGCCGGCGCCGCCCAGGCATTCGCTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //