Array 1 957640-958599 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP053027.1 Streptococcus agalactiae strain 01173 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    957640	    36	 100.0	    29	....................................	ATATGTATTTGTATCTAACCCATGAGAGT  	
    957705	    36	 100.0	    31	....................................	ACGAGTAAATGGTTTCATCGCACGACTTACG	
    957772	    36	 100.0	    30	....................................	AATGCGTTCATTTTGTAAGAAATCTATCAA 	
    957838	    36	 100.0	    30	....................................	TGACAGATGAAACAAAAAAAGTCTACCTAA 	
    957904	    36	 100.0	    30	....................................	ATGATATCATCGGCTTCATAATGTTCCAAT 	
    957970	    36	 100.0	    30	....................................	CTGCTACTAACTCATCTGGTGTAACTTGTT 	
    958036	    36	 100.0	    30	....................................	TTGACCTGTTTCATTCTCTGGAACTTGTTG 	
    958102	    36	 100.0	    30	....................................	AATTTGATTTTTTAGCATAGTATAGCTTGT 	
    958168	    36	 100.0	    30	....................................	ATGTTGTAGAATCATATCGACCATATAACC 	
    958234	    36	 100.0	    30	....................................	GCTTGGTCTCGAAGAATTACAGAAGAACAT 	
    958300	    36	 100.0	    30	....................................	CAATTGATTGCCGTTAAAACCGATAGAGGA 	
    958366	    36	 100.0	    30	....................................	AAGTGCCACAGTTTGTGGCTGATTGGATTG 	
    958432	    36	 100.0	    30	....................................	CATTCAAGGACTACCCTCAACAGTAACTCT 	
    958498	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC 	
    958564	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        15	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//