Array 1 394721-392502 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRLW01000001.1 Bifidobacterium longum strain AM11-2 AM11-2.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 394720 36 100.0 28 .................................... TATATCCCGGTGAAACCGTTTGCTATGG 394656 36 100.0 28 .................................... ATGCTGACCAGCCTGATTCAAGGCATCA 394592 36 100.0 28 .................................... ATGAATTTGCTGAAGATTATTTCAAGCG 394528 36 100.0 28 .................................... GTCATGCCGAGACTCTTACTGCACCTAG 394464 36 100.0 28 .................................... CCCGTGGAATAATCGCGCAGACGTTCAT 394400 36 100.0 28 .................................... ATGTTCGGACAACCCGTGCGCGTCGAAC 394336 36 100.0 28 .................................... AGGCAACGCGCATGGATGAGGCAATCTA 394272 36 100.0 28 .................................... ATGACGGGCATGCCCTGTATACGCTCAC 394208 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 394144 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 394080 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 394015 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 393951 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 393887 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 393823 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 393759 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 393695 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 393631 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 393567 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 393502 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 393438 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 393374 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 393309 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 393245 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 393181 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 393117 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 393052 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 392987 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 392922 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 392858 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 392793 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 392729 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 392665 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 392601 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 392537 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 35 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGTGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 592731-593075 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRLW01000001.1 Bifidobacterium longum strain AM11-2 AM11-2.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 592731 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 592797 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [592803] 592881 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 592941 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [592989] 592989 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 593046 27 81.5 0 C.............C.....C....CG | GC,C [593063,593067] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : GACTGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //