Array 1 31659-33804 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJG01000018.1 Mammaliicoccus sciuri strain SNUC 275 contig018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 31659 36 100.0 30 .................................... TATTAACTTACTTCCTTGATGCAGTAATGT 31725 36 100.0 30 .................................... TATTAACTTACTTCCTTGATGCAGTAATGT 31791 36 100.0 30 .................................... TGAAGAATGACGTACCACTTATTAGCCTAT 31857 36 100.0 30 .................................... TAAAACATCGTGTTACTTATGAAGAGCTTA 31923 36 100.0 30 .................................... AAGACTTTGCAGATAATGATAATTTAACAC 31989 36 100.0 30 .................................... ATATGTCACGTAGTACAACTGATTTACAAA 32055 36 100.0 31 .................................... AGATTTTGGGGTTTAAAAACGAGCGGTTTTA 32122 36 100.0 30 .................................... ATGGAATTGAAACGATTATTCAAGAGTTTA 32188 36 100.0 30 .................................... GTGGAGGTTTAAATATAACTGGTGTAAACA 32254 36 100.0 30 .................................... TGAGCAAGTAAAATAAACGAACGTTTGACA 32320 36 100.0 30 .................................... CGACTTATTTGACCCAATTTCACTAGGTAA 32386 36 100.0 30 .................................... CTTTACCTTTATCAAAACCTAACAAACGAT 32452 36 100.0 30 .................................... TCATACGTTGAATGTGTAAGTGAGGTGTAG 32518 36 100.0 30 .................................... AACATGTTGACGGTTTGATAACATCAGACA 32584 36 100.0 30 .................................... AGAATGGCAGCATTGATAAGGTAAGAAATA 32650 36 100.0 29 .................................... AAATATTAGATGATACAGAGTTTAGTCTT 32715 36 100.0 30 .................................... CAAGCGAGGCACAAGATATCATGGCTACTG 32781 36 100.0 30 .................................... CAAGCGAGGCACAAGATATCATGGCTACTG 32847 36 100.0 31 .................................... TGCAAACGCTAGACACTCATGACCGTTCATT 32914 36 100.0 30 .................................... AACCACAAGATTTTGTTTTCCCATTTTTCA 32980 36 100.0 30 .................................... GTCGGTAAAGTTAAAGCAACACTGATATTA 33046 36 100.0 30 .................................... TGAGCAAGTAAAATAAACGAACGGTTCACA 33112 36 100.0 30 .................................... GCGTGCTATGAAAAATAGTTATCAAGCTCA 33178 36 100.0 30 .................................... ATAAGCATTTCTAACACCGTTAAACAATGC 33244 36 100.0 30 .................................... TGGGAATACGTTGGGCGATTCTTATGACAA 33310 36 100.0 30 .................................... ATAACAGAACTGTTAGTAGCCAGAATAGGA 33376 36 100.0 30 .................................... TTGTTGATTATCCTATAATCTACAAACATA 33442 36 100.0 30 .................................... CGGTGAGAGTGACGCAGAAGTCATACAAGC 33508 36 100.0 30 .................................... TCATTTTTAGGCATATTTTTATGATCATGT 33574 36 100.0 29 .................................... GAGGACGAAAAAAGAACCATAGCGCCAAC 33639 36 94.4 30 .................................G.C CAATTAACAGTGTGAAGAAAGACCATGACA 33705 36 91.7 29 ................G.......C..........C GAAGACGAAAGAACCACAAAGGTCAGGCA 33770 35 83.3 0 ............A........CA......-....CG | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.1 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : ATCAAGCAAAAGAAAAAGCATTTGTAATCTATTTATATCCAGAAGCGGGCCTTAGCATTAAAGAACAAATAAGGTTTAGAAATATACTAAACAACTTACCTGTTCCAGTTATTGTTTTAACCGAATCACCATATTTTTTATCTGATAACCTTAAAGGACTCAATTATTTTATTAATAATGTTCAAAAGATTACAGAATCATTTTTTGAAGATAGCTATTGGAATGCACCGATTAATCTCGAAAAAGAACGAATTAAAGAAAGATTTGAATATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATTTCCAACTATTTGCTTGCGGATATCATTGCTTTTAATGATATCGATCTTTATATTATTGTTTCATTTTTAAAGCATTGTAATTTAGAGTACACATTAGAAATTGATAAAACAAAAATTTCATTAGCATTATCGACTTATCTATTTTCTTAATAATAATTTGAGTTTATAATTGTGCTAGAGGTT # Right flank : GACCTTCTACGCTTAATTAGACATCTTCTATGAATAGAAGAATTGTTGTTATTAAGAAGGTAGGGGGTCTTATTATGAGAAGCAAGCATACGGTTATGAATTTAAACAGCAATTTAATACAACGAAAAACCGCCCGATCCTGTAGCTCTCACTACAAATCGGGTGGTTATTTTTTACATCATTTAATTATTCCATTAAGTAACTGTCTTCGGCGCGTTTGATTGTTTTCTTTTTCCATGGGTCGAGTATTGGTTTAACGATAAATCCTATTGTGAATATGACGACACCAAATAATGCGAGGCATATGAGATTGTATATGAGTATTTCTGGTACGACGCCTCCAACCGCTTCTCTTAAAGCATCTACAGCATAAGTAAATGGCAAATATGGATGTATGGCTTGGAAGAATTTTGGTGTGACTTGTATTGGGAATGTTCCGCCTCCGCCTGCTATTTGTAGTACCATAATGACAATTGCTAATGCTTTACCTACGTTGCCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //