Array 1 1523-1127 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOO01000004.1 Chromobacterium violaceum strain GHPS1 NODE_4_length_324000_cov_20.0329_ID_2142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1522 29 86.2 32 .........A.ATG............... AACCGGGCGAAATACAGCGGACGCTTGACCAT 1461 29 86.2 32 .........A.ATG............... CTGGGGTTACGGCCGGTACCACCTCCGCGTAG 1400 29 100.0 33 ............................. CACAAAGTGATCGGCCGGATCCGCGCTGACGAT 1338 29 96.6 32 ...........T................. GACGTGGAGAAAATCACCCGGTTTGTGCTTGA 1277 29 100.0 32 ............................. ACCACAAAAACTGTGATCAACGACTTGCGGCC 1216 29 96.6 32 .........A................... TAAGTCGCCGTCAACTTGCCGTTGTCGTCGCG 1155 29 79.3 0 .........A..........A...TG.TC | ========== ====== ====== ====== ============================= ================================= ================== 7 29 92.1 32 GTGTTCCCCGCGCCCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGTCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGTCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGGGTGGGTTTTTGTCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGTTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTCGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTTGGCTGCCGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9616-8795 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOO01000004.1 Chromobacterium violaceum strain GHPS1 NODE_4_length_324000_cov_20.0329_ID_2142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9615 29 96.6 31 ..A.......................... ATCTGGCCGGCGGCGCCACGTCGGTCATGAA 9555 29 100.0 32 ............................. CCCTAGATCAAAATTTGCGCCAATGCTTTTAA 9494 29 100.0 32 ............................. TCTGACCTCGATGGGCGCTCCTTGCCCGCTGA 9433 29 100.0 32 ............................. CCCCCCAACTGGCCCGCCTTCAGCGCCATGCC 9372 29 100.0 32 ............................. CCAGCTACGTGTGCGGGTTTCCTTTTGCGAGG 9311 29 100.0 32 ............................. GCTCGGGCTGAGGATTCTCTTCGTCGTTTGAC 9250 29 100.0 32 ............................. ATCGAGGTCATCCCAGGGGTTCGCTACTACTT 9189 29 100.0 32 ............................. AGGGCAATCTCCCCATGCAATGGGTGCTGGAC 9128 29 100.0 32 ............................. TCGGTCGCGCCATCGGTGATCACGCCCTTGAT 9067 29 96.6 32 ............C................ AGTCCACCACACAGTAGAGCAGTTTCCAACAA 9006 29 96.6 32 ............C................ CCGGCGGCCTCGGCTGACAGGGTGAACAGGCC 8945 29 96.6 32 ............C................ TCTACAACCCACAGAATGGCCAATGGCAGGAT 8884 29 96.6 32 ............C................ CCCTTGAAGGCGGCACCGCGCCCTGGCAAAAA 8823 29 75.9 0 ............GTT..........GTGA | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : CTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACAGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATTACCTGGTCGAGCGCTTGCGGGCGCATGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGGGCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTTGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCGGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : CGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCACGTCCGGTAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCATCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105473-107716 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHOO01000009.1 Chromobacterium violaceum strain GHPS1 NODE_9_length_196251_cov_18.4455_ID_2152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105473 28 100.0 33 ............................ AGCCTGAAGGAAAGCAAGCCGTACCTGTTCGGC 105534 28 100.0 32 ............................ TCTGATTGAAGTCCTTCAGACCCTATGCCATG 105594 28 100.0 32 ............................ AACATGGCCGGCCGCGAAGCGAACCTGATCGC 105654 28 100.0 32 ............................ CGCCCATGGGGGTGGCGCCGGATGGCCGGACG 105714 28 100.0 32 ............................ AGGGCGAGCCGGTCGCGGGTGGTGGCGGTGGG 105774 28 100.0 33 ............................ CTCAAGGACTTCGAGAAGGCAGGAATCGATCTC 105835 28 100.0 32 ............................ TACGTCAACCACCGGATGCTGCTGATGGACTA 105895 28 100.0 32 ............................ TTCGGCCCTGTGCTTTTGCCGCCGTGGAGGGC 105955 28 100.0 33 ............................ GTGCGCCGTTGTGCGCGGCTCAGGTGGCCGCAT 106016 28 100.0 32 ............................ GCCTCGCCGCTCTGCTCGGCGGCGCGCACGCC 106076 28 100.0 32 ............................ ACATCGAGTTGACGGCGGACTGCTGCGCGATG 106136 28 100.0 32 ............................ AAACAGCCGGCTTGCATCAAGCAGACCCAGCT 106196 28 100.0 32 ............................ TCAACCCGCCCCGGCGCGGCGTCAAAGGTGTT 106256 28 100.0 32 ............................ ATGTACGCGCGCGCCGCGTCAGGGCAGCTGAC 106316 28 100.0 32 ............................ GTCGCGCGCCACACCATATATGCGCGTGACGT 106376 28 100.0 32 ............................ CATTCCTCGACCAGCACTGGCAATGCCCCGGC 106436 28 100.0 32 ............................ GATCGACGAATAGATGGGCGTGAGGTGCTTGG 106496 28 100.0 32 ............................ ACCAGCAGCAGCCTGGCGCGGCAGTCCAGGAT 106556 28 100.0 32 ............................ TCGGCCCAGTGCCAATCGCTGGCGAACAGCGT 106616 28 100.0 32 ............................ AACCAATCGCGCGCGCCTCCGCTGCCCGGCAA 106676 28 100.0 32 ............................ TGTCCATCGACAGCCCGCTCATGTCCAGCGTG 106736 28 100.0 32 ............................ TTCACCAGCGATTTATGGAACGGCGCCTGCGC 106796 28 100.0 32 ............................ CATGCGGGCCATTTTTTTTGGAGCCGACATGG 106856 28 100.0 32 ............................ AAATGCGTCCAATGCCATCTCGCCAATCCGAT 106916 28 100.0 32 ............................ TACATTACAGGCTCATTCAGAGCTTCAAGAAG 106976 28 100.0 32 ............................ TGACCGGCGAGTCCAGAACGGAAACTGGCATG 107036 28 100.0 32 ............................ ATCTGGCGCGCGGTGCGCAGGCAGCGGTTGCG 107096 28 100.0 32 ............................ AATTCGGAACGTGGAGCAAGCGCGATGTTGGC 107156 28 100.0 32 ............................ ACGATGAAGAGCACCCGATGGTCTACCCGTTC 107216 28 100.0 32 ............................ AGTCACGGCGGCAAGGTCGTCAGCGCATCCAG 107276 28 100.0 32 ............................ GAACGGCCCGGCTGATCGAGGCGATGGAAAAA 107336 28 100.0 32 ............................ TGTACAGTCAGAACCTGACCGAGGAAGAGAAG 107396 28 100.0 25 ............................ AAAGGGGCACCGGCATCGGCCGCGA Deletion [107449] 107449 28 96.4 32 .............T.............. GATTAGAAAACGGCGTATGGAGCGGCTGGAAT 107509 28 96.4 32 .............T.............. ATCACGATCAGCGGGTAATGCTTGCGGCCGGT 107569 28 96.4 32 .............T.............. GATGGGAAGGACGCGAGGTTGGCCTGCGGTCC 107629 28 96.4 32 .............T.............. ACAGTGACGCCACGGGCGGCGGACGCATCAGC 107689 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.5 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : CGTTGGCTCAGTGGCTTCGCCGACCACGCTATCGTCGGCGACATCCGCCCCGTCCCCGCCGGCGCAAGCGCGGTCAGCGTGCGCCGCCGCCAGGCCAAGAGCAGCCCCCCGCGCGCGCGCGACAGGCTGATGCGCCGCCAGGGCATCAGCGCGGAAGAAGCGCGCCGGCGGATACCGGACGAAACGGCGCAGCGGCTGAACCTGCCCTACCTCACCGTAGACAGCGCCAGCACCGGCCAATGCTTCCGGCTGTTCGTCGAGCAACAGGCTGCGCCAAGCATCGCCGCGGGCAGCTTCAATGCCTACGGCCTCAGCGCCGCCGCCGCCCTGCCGGCTTGGTAGCCCGAAAGGGTCGCGGCCAGGCCCGCGACCCTTTTCTCTCCCGCCACACCTCAACCTTTTAAAATCAGAGACTTAACAGCATGCCGGCAAAAAGGGTTTTGCCGGCAGAAATGGCTGACAGCCTTGCCGAACAAGGCTGATGGGCAATAAGATCTCTA # Right flank : AGTAGTACGCACGTCCGTCATTCCGGAGCATTACGCGCTGCGCCTGGACACCTGGATCACCATGCACGAGGACCTGCGGCACAATCCCGCCTGCAAGGCGGTGTTCGGCGCGCTGGTGGAAGGCATGCGTCGGCATGCCGGGGATGTGTCCTCCGGCGGCTGTCCGCCATGAAAAAAGCCGTCCCGGCATTGACCCGGAACGGCTTCTTCGCAGCCGGCCGCCCTTACTTGGGCGCTTTCGCCTGCGGCAGCCGCTGCAGCAGCGCGAAGGTCATGTTCTGCTCGCGCGGGCGGTTGCCGGTCCACAGCACCTGCCAGCCTGGCTCGGCCACGCCCTCCTCGCTGCTGCGCACCACCAGCCAGTAATCGCACGGCGGCGTCTCCCCGGATGGGAAGGACAGCAGGTCGATGCCGGCGTAGTAGCGCCAGCTGATCATGGCCAGGCTGTTGCGGTTTTCCGTCGCGATGCAGGTGGCCGTGGCAGGCAGCTTGCGCAGCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //