Array 1 3409951-3408154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017662.1 Cronobacter sp. JZ38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3409950 29 100.0 32 ............................. TAATTTTCTGCGCCGTAAATGACATTCATCGA 3409889 29 100.0 32 ............................. AATTTGCCGAAAAAGAGGAGGCAGCCTTTACG 3409828 29 100.0 32 ............................. ATCCGCCTGAAAATAATAATAGTCGGCGTTAC 3409767 29 100.0 32 ............................. CTCGCTATAGTGGATTTTAGTGGCAAAACAAA 3409706 29 100.0 32 ............................. ACGTGATCTCTGACGCCAGCAGGCCGCCGGAA 3409645 29 100.0 32 ............................. CCTGGGAGCGTTTGTAACAAAGAGGTGGGCCC 3409584 29 100.0 32 ............................. GTTCGACGTTGTATTCGCTGACCTTGAAAAAG 3409523 29 100.0 32 ............................. GTTATAACAGGCTGGTAGCTGTGCGCGCGGCG 3409462 29 100.0 32 ............................. GCCGGGGTCGTTGAGGTTGGTTAAAACTGTGG 3409401 29 100.0 32 ............................. TTTGCAACGACAAACACTCGCAACGACAAACA 3409340 29 100.0 32 ............................. TTCGGCCTCTATGACGGTGCGCAGTGGCGGAT 3409279 29 100.0 32 ............................. GCTCTGTCTGTTTTTGCCTGTGAGTTCGACAC 3409218 29 100.0 33 ............................. CGCGACTGGTCCACCATGCCCGTGAACGGCTGT 3409156 29 100.0 32 ............................. GTTTTCGCTGACCCATCCATCCAGTGTTGCAG 3409095 29 100.0 32 ............................. AGCAGGGCAAAACGCGCTCACGAAGAGTCGGC 3409034 29 100.0 32 ............................. CCGGGCAAAACTGTATATATTTTCAACTCCGA 3408973 28 96.6 32 .....-....................... ACGAATTTTATCGTTGGCATCATGGCGCAGGT 3408913 29 100.0 32 ............................. CGCGCAATCAATAAAGACGAACCTAAATTTTC 3408852 29 100.0 32 ............................. ACCCGACTACGCCGTGGCACGCGGTCTACAGC 3408791 29 100.0 32 ............................. AGTACACCCGAATCATTCCCAAATGACACCGA 3408730 29 100.0 32 ............................. CCGCGGCGTCAAATTCAGCTGATGCAAAGAGG 3408669 29 100.0 32 ............................. GAGGCAAACAACAACGAAGAAATCCCCGCTTG 3408608 29 100.0 32 ............................. GATCTGCGCGATATTTGCGATCCCGCCGTAGG 3408547 29 100.0 32 ............................. GTTACTGGCATTTAAATTCTCAGCCGGTATCG 3408486 29 100.0 32 ............................. TCGGCCGCTGGCTTGTCACACCTTGAAAATAG 3408425 28 96.6 32 .....-....................... AAACGCCGTGGTGCGCGGCTTTTACTGGTGCG 3408365 29 100.0 32 ............................. ATAATCACCGGTAGCAGTCATATTAAATACAA 3408304 29 100.0 32 ............................. CGGCTGCTCAGGGGCAGTGGGTGATTATTTCA 3408243 29 100.0 32 ............................. GTGTTTACCACGTTAGCCAGTGGAAAAAAAAT 3408182 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTGGCGGCGGGCGACATTGAGCCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAGAATGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAGCTGCGCGCCGGGGTTTATGTCGGCGATGTCTCTAAGCGGGTACGTGAAATGATCTGGAATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTGGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGAGAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGAAAAATTTCCTTATAAAACAGTTATATAGTTTTAGA # Right flank : TCTAGCCAGCCGACGCCCTGTTTCACGCTCCTTTCACCATGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGCGCTCTCGCCGCCACCGTCACAACATGCTGCTTCTTCTCTTATCCAGAGTATCTGTCTCTACTTTTTCTTATCCGCGAAACGCAATATCCATTTCCGCCACGTAGCGTTATATATTTTGTTTTTTATTTGCAAATTCATTTAACTGTCATTTATTTGTCATCTTATTGTCATAATAGCTTGTCGAATATCTCATTTTTGAAACGTCTTTTTATAAGAAAGAGCTTAGTGCTGGATCTTAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3437238-3436478 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017662.1 Cronobacter sp. JZ38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3437237 29 100.0 32 ............................. TTTTCAGCGGGCGATCCAGTCACGGCGGTTGC 3437176 29 100.0 32 ............................. GGTGGAAGCTGGTGCCGATTGAGCCAACTAAA 3437115 29 100.0 32 ............................. ATTTCCCTGTCGATTTGTTTTGAACATACCAA 3437054 29 100.0 32 ............................. TATCAATTGGAACGGGTATCATATAGCACAAA 3436993 29 100.0 32 ............................. AACGAGACCAGCAGCGGGAGGGGTGCGCGCAA 3436932 29 96.6 32 ............................T ACGTCGAGCGTCGGGGGCTTGAGTTCGGCGTT 3436871 29 100.0 32 ............................. CAGATAAATATTTCAAACAGAAGTACCTCATC 3436810 29 100.0 32 ............................. CTCACCGGGCTTGATAGGCAGGTTGTGGAACT 3436749 29 96.6 32 ...............A............. GAGGGGTAGAGGCGAGCAGGCAAAGAAAACCC 3436688 29 100.0 32 ............................. CCTGGCATTGGGAGTGGTGGCAGGCTGGTGGA 3436627 29 100.0 32 ............................. CTCTTCCCGGAGAAGTCTGCAGCGCTCATCTA 3436566 29 100.0 31 ............................. TCATAAACGGGCGCGCCGGGATTAACTCCCA 3436506 29 86.2 0 .........A.C.......AA........ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATTGCTTTTATTGTCGCCAATATCAACATCAACTACCGACGACCCGCAGTGCTGGGCGATCTGCTGACTATCACCAGCGAGGTAAAACAGCTTAACGGCAAAAGCGGCGTGCTGAGTCAGGTGATTACGCTTGCGCCTGAAGGCGAGGTGGTTGCCGATGCGCTCATCACCTTCGTGTGTGTCGATCTGAAAACGCAGAAAGCGCTGCCAATTGAAGGCGAGCTGCGCGAAAAACTGGAAAACATCACAGGCTAAATTCTGCAATCACGCCGCCTGTGCATGCAGTGATGGATTTCTCTCCGTTAAAGGCGAACAATCCGGTAGATGTTATCGGCCCGGAAGCACTGTAAAAAAATGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGATGTAAATGTTGGTAGGTTGTGGCGGGCGATAAAAAGGTAAATAAAACAAAGTATTGTCTTTAGA # Right flank : GAACAGGGCGGTGAATAGAGACCAGAGAATACGCGTCCTCTGGCCCCCCACATTCTTCAGCGGCGTTTATACTTCAAAGCCAACGTAAAATTTCGCAACACTGCGCAACAAAGGAGAGACGATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGCTGCACGCGCATCTTATTTGCCACTGCCTGCTGATTGAAACCCAAAACGACGGGCTGGTACTGGTGGATACCGGCTTTGGTCGCGACGATATGCGCCATCCTGGCCGTCGGTTGCCGCTGTTTTTTCGGGCGCTGAACAATATCCAGTACCGCGAATCATTAACGGCGTTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACATATCGTGCTGACGCATCTCGATTTCGACCACGCAGGCGGTATCAGCGATTTCCCGCATGCGCAGGTGCATCTGATGCAACAGGAGATCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3723964-3723277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017662.1 Cronobacter sp. JZ38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3723963 28 100.0 32 ............................ AGGGCGGAAACGATAATCGTCTTTCAGCTCAC 3723903 28 100.0 32 ............................ TTGAGCGTATAGCCGTTGTAACGGTTATCTTT 3723843 28 100.0 32 ............................ ACGTCAAAATCCCTGGCGATCCTGTCAATGCC 3723783 28 100.0 32 ............................ ACTGAAACCAGTAAGGCTGACCAGGGCGGAAA 3723723 28 100.0 32 ............................ GCCTCGCGAAAGTCGAGGCCGAGCGCGACGAG 3723663 28 100.0 32 ............................ AGCAACACACCAACGACCCGCTGGATGTGACG 3723603 28 100.0 32 ............................ TTACGCCGCGATTGATGCTCGCATAGCTGAAT 3723543 28 100.0 32 ............................ CACAGTTGTGTCTCCGTTTGTACCGGCTCCGG 3723483 28 100.0 32 ............................ AGGGCAGGGCGAGAGCGGCAGCGCTGGCAAAC 3723423 28 100.0 32 ............................ ATGCCAGCGACCACTGATATAGCTATGCAAAC 3723363 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 3723303 27 78.6 0 ...T.......TA........C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCAGGGTTACAGGATTACTGCCAGAGCAGCGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGTAAAGGCTGGCTGACGGAAGAAGCCGCGCGGCAACGGCTCTGCGATTTACATGAGCAACAGACCTCTCTGCCATGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAGCGCGACGATTCCCTGGTTCTGACCTTTTTTAAAAATGCCTCGCTAACGTGTTGATTTTTATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATCAAAATGCATACCAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATACTGCTCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATCAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCGGCGCTATTGACGCCCGACGCCCGCAGCAGCATTCAGCTTACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACCACCTGGGGCTATAACGGCTCGCTGCTCGGGCCGGCTATCAAGCTGCGCCAGGGGAAGCCGGTGAATGTCGATATCCGCAATACCCTCGCCGAAGAGACCACGGTGCACTGGCATGGCCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCCCAGGGCGTTATCGCGCCGGGGCAGACCCGCAGCGTAAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3735415-3732804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017662.1 Cronobacter sp. JZ38 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3735414 28 100.0 32 ............................ AGTATTCGGCATGGTTAACTTCATCGACGATG 3735354 28 100.0 32 ............................ TGATAAGGAAATTTCCCCGAATACCCGATCAT 3735294 28 100.0 32 ............................ GATATCAAGACACCCCAGGTCAGAATAAAGAA 3735234 28 100.0 32 ............................ ACACCGGCGACGGCGATAGCCGCACCGCTTCA 3735174 28 100.0 32 ............................ TTGTTATTCCTGGACCAGGGTAGCCAGGAATT 3735114 28 100.0 32 ............................ TTATCGGTAGCTCTAATAATGTCTCGCCCGAA 3735054 28 100.0 32 ............................ CCTGTCTCAAGATTGATGCCCGCTGCGGCGAT 3734994 28 100.0 32 ............................ GGACTCGCCCGGACGCTACGCGCCCGCCCCGC 3734934 28 100.0 32 ............................ CGGCTGCGCGCAGCCTGGCGACGTTGAGAAAC 3734874 28 100.0 32 ............................ GGCGCGGGCGGTGCGGTGTAGAGCGGGGTGAC 3734814 28 100.0 32 ............................ AAAGAAGCAGACAAACTGGAAAGTTACGCTGT 3734754 28 100.0 32 ............................ TAGAGAAGCCGAAGCTGTCCAACAAACAGGTT 3734694 28 100.0 32 ............................ GTGTGCGCGAGATATGCCGCATTCTCAAAATA 3734634 28 100.0 32 ............................ AGTTCGTCGACGCGCCCGCGCCAGTTTTTGTC 3734574 28 100.0 32 ............................ TTGAACTACTTTCACGCCTTTAACCGGCATAA 3734514 28 100.0 32 ............................ TTCAGCTGGCAGTGAAGCGTTAATGGCTGTTC 3734454 28 100.0 32 ............................ TGCTTAAGCTGACTGAATAACGCATCAACCAG 3734394 28 100.0 33 ............................ TCTCGCCTTCTTCTGTGGAGCAGTCGCGCAAAA 3734333 28 100.0 32 ............................ TCTCTGCGTGCTCGGTTAGTCGCGACGAGATC 3734273 28 100.0 32 ............................ GGGGAGTAGTTCTCGTTAAACCAGTTCTCCAG 3734213 28 100.0 32 ............................ TTACCAGCCCTGACCAGTTTACGAAATTCGGT 3734153 28 100.0 32 ............................ ATCACATCACCGGCAGATCGTCAGTAACTGCG 3734093 28 100.0 32 ............................ GACGGCGCAAGGCCGGCCGCCCCTGCCCCGCT 3734033 28 100.0 32 ............................ ATATGCCGCGCTGGGTAAGCCGCATCACCCTG 3733973 28 100.0 32 ............................ TACGACTGGAATTCAATACAAAATAATCTCGA 3733913 28 100.0 32 ............................ TGCCGGACTGAATCAAACGCGCTCTGCGTAAC 3733853 28 100.0 32 ............................ CGTGGCCGGTATTCAAAGGGCAGATTAACAAC 3733793 28 100.0 32 ............................ ACTCATGGTAAGAGCTGGCGCTCTCAAAACGC 3733733 28 100.0 33 ............................ TGCCGCCAGGGTGGGGATTACTACACGTCGTTA 3733672 28 100.0 33 ............................ GGCCGAGGAAAACAGGTGATAGGGCTGTTTGAT 3733611 28 100.0 32 ............................ ACGCGGCCACCGTCTACACCCTGCCACGTCCA 3733551 28 100.0 32 ............................ GGCTTGACCCGGACGCACCACGCACTAAACGC 3733491 27 92.9 32 .........A-................. GCACGGCAGCGACGAGAAGCAAAACAATCAGA 3733432 28 100.0 33 ............................ AGCATGTTTAGTGCTGTAGTCACAACATGAGAT 3733371 28 100.0 32 ............................ AAAACGCCTCACAAATTACAGAGGCTCATGGT 3733311 28 100.0 32 ............................ CATCAACTGATCGCCAAGCGATGCGGCCTGGC 3733251 28 100.0 32 ............................ GCCTCGCTGCGCTGCGTCCCGTGGGGGTTTTG 3733191 28 100.0 32 ............................ GTGAAAAGCGCCACGCCGGAAAGCGCCACGCT 3733131 28 100.0 32 ............................ AGAAACTAATGCGTAAACGGGAGCGTGCCGCA 3733071 28 100.0 32 ............................ AGTGATGATTACGTGCCGCCAGCTCGCGAACA 3733011 28 100.0 32 ............................ CGCTCCCCACGGTCGAGCGAGTGGATATCCAC 3732951 28 100.0 32 ............................ ATCAGCAGGACGCTGAGACGCCACAAGGAACT 3732891 28 100.0 32 ............................ AGTCGCGGGTAATGCTGAGGCGCTGCCATTTC 3732831 28 89.3 0 ....................T.A..C.. | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCAAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAACGAAAAACCCGCAGGTTGATATGCCGAAGGCGGAACAATGAAGAGGTTTAAAATAAAACCACCGCTGTGAAATCTGCCGTTTAAGACCCTTTTTTACCGCCCGTCCTTAAGATATTGATTTTTATAGCGCTCGACGTTCACGTTAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : TGCCATTTTTAATGCCATCATCGGCGGCAAAAGCCCATACCTAAAGATTAATAAATAAAATTCTTTATTTATTCGTGCCCTTTGACGTGGCGGAGTGCATGACGACCGTGCATTTGGGCTGATATATTTTAAAAATTAAAAGGATGTCACGATATGGTGCCTTAATTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATACTTCCTCGGTAATTATATAACGGAATTATAAGATGGACCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCCAATATTTATTATCTGCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACCGATGAAGGGAAAGAGTCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTCACACAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //