Array 1 84275-82230 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLL01000008.1 Stackebrandtia albiflava strain DSM 45044 LX16DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84274 29 100.0 32 ............................. CCCCGGCGATGGTGGATTTCCAGATGCTCAAG 84213 29 96.6 32 ............................T CAGGTCGAAGTAACGATGTACACACAGGATCG 84152 29 100.0 32 ............................. TGCGCGCCGTCGTCGGTTCAGCCACCGTCACT 84091 29 100.0 32 ............................. AGCCGGTCGGAGCGAAAAAGGTCCGTGCGAAG 84030 29 96.6 32 ............................T CGACATCGAAAGGAACCGCCGAAATGGCAACG 83969 29 96.6 32 ............................G AAGCCTCCCCTGCCTCCGCCGGACACCTCCGG 83908 29 96.6 32 ............................A AAGGCCGGCCTTTTGGTCCGAGCCCGTACCGG 83847 29 96.6 33 ............................G GAGCAAACCCGCGATGAACGCACCCACCCCCGA 83785 29 96.6 32 ............................T GGGGTTCACCGACTCCGGTGACCGGTCGCGGT 83724 29 96.6 33 .................C........... GGCGAACCCGTCCATGTCAACGACAGTGGAACG 83662 29 100.0 32 ............................. TCACCGTGTGCGGGGACCGGGCCGCCCGCGAA 83601 29 96.6 33 ............................A CCATCTACGCGGCGCTGCGTGAACTGATGGCCG 83539 29 100.0 32 ............................. GAAAAGGAGGGTCGGAAGTGAATCGAGACGTT 83478 29 96.6 32 ............................G GATCAAAGCGAGTTTGCGAGCGTGTGCATGCT 83417 29 96.6 33 ............................T GCGGACGCGGTACAACGTCTCGTAGCGCACCAC 83355 29 96.6 32 ............................G CGACGTCGGTCGCGGCCTGCCGTACATTTTTC 83294 29 96.6 32 ............................T GGGTTGTCACAGACCGGCGTCAGTTCAGTAAT 83233 29 96.6 32 ............................G GTGTCGGGGATCGACGCGGCCCTGACCGACCT 83172 29 100.0 32 ............................. CCATCGGTAAGACGCGCGTTGGATTCCATGCT 83111 29 96.6 32 ............................G TTCGGTAAGTTGTCCGAGCTGGAAACGGGAAT 83050 29 96.6 32 ............................G CAAGTCCGCCTGGGCGATCGCGTGAGGCGAAC 82989 29 96.6 32 ............................T TCTCTCTATTCGTAGAGGCGTTTGATAGGTAG 82928 29 96.6 32 ............................T GGGCGAGTGTCGGCACCGATCAGGGAGAGGGT 82867 29 100.0 32 ............................. CGCACCCTCACCCGCCTCGCCAACTCGGCGTG 82806 29 96.6 32 ............................A GTCGCGGGCGGCGGCGGTCGCTGACATTGGTG 82745 29 93.1 32 .........A..................T CCGGTAATGGTGCTCCGTCGTTTTGGTGAGAA 82684 29 100.0 32 ............................. GACCGGCTGTGGATCATCACGGGGAATAACCT 82623 29 100.0 32 ............................. CACTTCTCGCCCTTGTCCCGCTTCGGCTTCCG 82562 29 96.6 32 ............................T CGCGCCGACGGCGTCACCGAGACCCTGGCCGC 82501 29 96.6 32 ............................A GACCAGGTCATGGGGAGTTGTGGTCGATACGG 82440 29 96.6 31 ............................T CGAACCGCCACCACCGAGGAATCGGTGGCCA 82380 29 96.6 32 ............................A CGCCACGCTGATAGCGCGTGGTGAGGACTATC 82319 29 96.6 32 ............................G GTGACCCCGGAATAGTCATTGATTCGTACTCC 82258 29 79.3 0 ......T.......T.........GCTG. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 96.9 32 CTGCTCCCCGCGCACGCGGGGATGTTCCC # Left flank : TGAGCTGCAGATCGGCCTCTACTCCGACCGCACCCATGGAACGGTAGTCGCGAAGGGCTGCGGGATTGTTGGGCTGCCTGATCCGGTCGCGTTCCCATGCCTGTGGACCGGTCGGATAGCCGCCGTGGGCGAAGATCCCGGGGCAGGCGGTCGTGGTGGTGGCTGCCGTCGCCGTCTGTGGGACGAGCAAGGCGCCGAGCATGAGGGCGGCGGCGCAGAGCCGGGCGGCGAGTCGGTGCGGTCTGGGCATATCGGTCCTCCTCAGGTCATATGGTCATGTTCCTCCGCATTCACATATTCGGCCCATAGAGGACGCGCACAGTGGACCGCCGTCCCGACGGGTCGCGATCCGGCGGTGTGGTTTCGCTTCCGGTGGCGGAGCCGACAGCGTGACTGCGTACACTTCCCATGAGCGAACAAAGGATCCCGCCGAAAGGCACGACTAAATGATCTTGGTGAAAAATCCGGTTACCGGCCGGTAGACTCCCAGGTCACCGAGT # Right flank : GGTGGGGAAAGCCCCCGTGGGCGTCAGCCGTATCGGTCGCGATGCGCCTTGCGGGCTCGGCGGTACGCCGGGTCTGCGGCCGCCTCCTGCCACGCACGGTAAAATATCCGCGCGGACTCGGCCTTCACCCGGTCTTCGGGGGCGCGCGGGCGGCGCGGCCTGCCGTGGGCGCCGCTGCGTCCCCTTGCCTCCTCGGGTACCGGCCCCTCGTAGATCCGACCGCCCCGGTGAGCGGCGTAGCGACGTGCCCGGGTATATCCCATCTGAAGGTACTTGCGGGCCATGTCGGCGCCGACGAAGTCGCCGTCGGCCAGATATCGCCGGAACGCGGCGAGGAGGGCGCGACTGCTCCGGTCGGCGGCTTCGGGGGTCGCGAATCGCCAAAGCGGCAGGAGTTCCGATTTGTACGGCTGCACGAGCAGCACGCCCTGTTCGCCTCTGCCGACCCGGTACAGCTCCGGGTGGGCGCGCAGGTCGAGGGATTCGTAGTCGAGTGAGTA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97699-98154 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLL01000008.1 Stackebrandtia albiflava strain DSM 45044 LX16DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 97699 30 96.7 31 .............................A CCTCCCGCTTGCGGGCCTGGTGGGCGGCGTA 97760 30 93.3 31 ............................TC CTGACCTGTCTACCCCAACCCCAGACTTTCA 97821 30 96.7 30 .............................G GGAACGGCTGGGGCTGCACTGCCTATGCCG 97881 30 100.0 31 .............................. GCAACGTCGCCCCGTGCAGCGCGTTGAGCAC 97942 30 93.3 31 ............................GC CCCGAAACGCACTCCCGTTTCGGGAGTCGAA 98003 30 93.3 31 ............................GG GCAACCACACCGAACAGGGCACCGCCAGGCA 98064 30 100.0 31 .............................. TGCGGCGGATCAGCCACAGGCCACCGGCGAA 98125 30 80.0 0 ...T.................T..CC..GC | ========== ====== ====== ====== ============================== =============================== ================== 8 30 94.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : GGACGGCCGAGAATGATCTTGGGGAACTTCTCGGTTACCCACCGGTAGACATCCAGGTCGGCAAGGGTGCTCCCCGCGCACGCGGGGATGGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCG # Right flank : CGCTCGCCTCCTCGTCAGGTGGTGAGCCAGGTGGTGATGGGTTTGCGGGGGATGCCGCGGGTGACGCGGGTGCGGACCGCCGCCCGGTCGAAGTGGAGTCCCGGGTGGGCCGCCTCCAGTCGCCGCAGCAACTCGGGCAGGTCGGCGGGCCCGGTGGGGACGTCGACCAGGTCGCCGGTCAACGTGCCGCCCGACACCGGTACCCGGTAGCGTGCCGCACCCGCCGCCGCGAGGATCCGGACGGTCTGGCGTGGTCCCGGCCCGATCCTGACCTGCCACGGGAACACCGCGCTGCCGCCGGGTGCCCAGCGGACGTCGAGCAGTACGTGGACCGGTTGTGGTCGGCCGCCCGGGCCCGGCGGGGTGTGTGTGCCGGGCACGTCGACGGTTCCCTCCCAGCGCTGGAAGGGGACCGACAGGCCGATGTCGTGTGCCCAGGCGAGTACCTGGTCGACGGGTTCGGCGGCGAGCAGGTCGGCGAGTGCCCGGGTGGTCGTGGC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44521-43698 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLL01000012.1 Stackebrandtia albiflava strain DSM 45044 LX16DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44520 29 96.6 32 ............................G CGCACCCGCGCCTACCCGGGGGACCCTCGGCC 44459 29 100.0 32 ............................. CGTCCCAGTGTGGCGGCGCCGCGACGTGAAGG 44398 29 96.6 32 ............................C TGGGGTTGACCGTCACCCAGGATCGCCGTATC 44337 29 100.0 32 ............................. TCGTGACCGACACGATTGATCAGCTCTCGGCC 44276 29 96.6 32 ............................G CGCGCCAGCTTCGGGTGGAACTCGGTCATGTC 44215 29 96.6 33 ............................C ACGGAGGCGGGACGCAAAAACAAGGGCGCGATG 44153 29 96.6 32 ............................C TGATGGCGCGGCGGAAGTTCGGGAAGATTCGC 44092 29 100.0 32 ............................. ACCATGAGCCGCTAGGTGAGAATGACGAATGG 44031 29 100.0 32 ............................. CGGTCGGTGTCACGTGGGACGCCCGCACATCT 43970 29 100.0 32 ............................. TCCCGAAACGCGCCAATCAGGACAAAGTCATG 43909 29 100.0 32 ............................. GCGATGCACGCCAAGGCATTGACACCACATGA 43848 29 96.6 32 ............................G TGATTTCAGACAGGTTGGACGACATGTGTCCA 43787 29 96.6 32 ............................C CGACACTTGCGGGCGAACTGGGATTGAGAGAC 43726 29 72.4 0 ...........G.......C.CC.ACA.C | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.3 32 GTGCTCCCCGCACACGCGGGGATGGTCCT # Left flank : GAGTTCCCCTCGCCACCAGATACCGAACAGGCCACCGGAGTCGGCGGCGCGGCGTTCCGCATATCGACGCAACAGGTCACGCGCCTTGTCGACGTCCTCGGTGACGAAGGTCGGACCGACCCACGGCCGGATGTGCTCCCGCGCCTTGTCCATGTGCGCCGCGAACTCCTCGGCATGCCACACCTCAAGGGGACGAAGTTCTGCGTCTTCACGCAACGCGACCGAGAACACGGGCGACCTCTTTTCACGGGGACACCGGTTCACGCGGAACCGGGACGTCCGGGGTTGACGGAGGCCAAGACTAGTCCTCCGAACCGTTGCGTCGGTGGTGTCGGTCATCACCGATCGCGGGTTCGCCGGTGCGGTGGTCGAGCGCACGGCCACCGGCGCTGGGGAACCGTCACGGGTAACCTTGACGGCAACGCGTCACGAAAGGCGGAGCGTAAATGATCTTGGTGAGAAATGCGGTTACCCACCGGTAGACCCGCAGGTCACCAAGT # Right flank : TCAACCCGGCGCCCGCAGACTCACGCCTGTAGGGCGGCGCCGGGGATGGCGGCGAGGAGTTCTCGGGTGTAGTCGTCCTGCGGGGCCGCGAACAGCTCGTCCGGTGTTCCACTCTCGACGATCTGTCCGGCCCGCATGACGTGCACCTGGTGCGAGATCATCCGCACCACCGCGAGGTCGTGGCTGATGAACAGGTAGCTCAAGCCGAGTTCGCGTTGCAGTTCGCCGAGCAGTTCGAGGATCTGCGCCTGTACCAGCACGTCGAGTGCCGACACCGCCTCGTCGAGGACGACGAGTTCCGGGTTCAGCGCCAGCGCACGCGCGATGGCGACGCGTTGCCGTTGCCCGCCGGACAGTTCGTGTGGCAGTCGTTCGGCCATGGCGGCGGGCAGCGCCACCTGGTCGAGCAGTTTCCGCACCGACTCCCGCCGGGACCGCTTGTCGCCGATCTTGTGGACCTTCAACGGTTCCGCGATCGACTCCTCCACCGTGTACCGGGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACACGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45577-46461 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLL01000012.1 Stackebrandtia albiflava strain DSM 45044 LX16DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 45577 30 93.3 31 ............................TC TCGACTACCTCGCCGCGGCGGGGATAGTCCG 45638 30 96.7 31 ............................G. GGCTGTCGATGCCCGTGGACTTCTTCACCTC 45699 30 93.3 31 ............................GG CGCTGTACATCGCCCGGAACCATCGGGAACC 45760 30 96.7 31 ............................G. GACAGCCTCGATGCGGCCCTTCGGCAACGCG 45821 30 93.3 31 ............................GG CCGGCGCAGTGGGAGCCGCTGGTCGACATCG 45882 30 100.0 31 .............................. CGGTCTGAGGGCTCACCCCGCGCCACCAGGC 45943 30 96.7 31 ............................T. GGGTGCGAATCGCTCAATTCGGTGTCGGTGC 46004 30 96.7 31 .............................G TGCCGACCGCCACGCTCGTGGCTGTCTACCA 46065 30 100.0 32 .............................. GCATGCCGCCACATACCGCCTGGTCACGGCCC 46127 30 100.0 31 .............................. GCTCTCTCGTCATGGTCGGGTACTTCGCGAT 46188 30 93.3 31 ............................TG CGTCGATGACCGCGTTCCCTGCCCCGTCGCT 46249 30 93.3 31 .........A...............C.... GCGACACCAGAGTATCCAGAAGGGACGGAAT 46310 30 93.3 30 ...........A.................G GACCCGTCGTGTCCGGGGTCCGGGTGGGTC 46370 30 96.7 31 ............................T. TTGTTGGCGAGTTGTTCGCGGTCACCCCCAC 46431 30 86.7 0 ...........C.C..............GG | T [46446] ========== ====== ====== ====== ============================== ================================ ================== 15 30 95.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : TTGCTGGCTGGAGCCGGGCGCAGAGGGGAACGGACTCATCACGGCCGCCAGCCGGACGCTGCTCGACTGGGTCTTCCACACGCGCGGTCTACACCGGGTGGAGTGGGTGTGCCGGGCCGACAACGAACGCAGTGCGGCGGTGGCGAAGCGGCTCGGCATGACGATGGAGGGGCAACGACGCGAAGCCTGGCCGTACCAGGGGAAGCGTTACGACAAGCAGATCTGGGCGATCCTGGCCCCGGAGTGGAAGGCCCAGTCGTCCACATGAGCTTTTCCACAACCCGTTGATCGTCCACACCGGCACAGTCTCACGCTGGACGCCGCCACTCTCCAAGCCCTAGGCTGAAGCCATGGGGTGGAGGAGTGGCGGCCCCCGACACCATTGCTGTGGAGGGGCACCGAATCACAGAACACCGTATTCTCAAGGTGATCAGGTGAGCCGACAAATGATCTTGGTAAGAAACTCGGTTACCGGCGGGTAGACCCGCAGGTCACCAAGT # Right flank : GCTTCGTCGTCTCACCGGTGCGCGGCGGCGCGGCGGTTGTTCCGGCGGATGCGGCCGATTCTTCGGAGGGTGCGGGTGCCGAAGTCCTCGATACTCTCGCCGATCACGAGCACGGTGATTCCGGTCGGCGGGTCGTAGGCGACGGGCAGGGTCACCCCTTCCGCCAGCAGGTCGCGGTGTTGCAGTTTCACCCGCTGAGTGGTGAAGGCGTCGAACGAGTCGCGGCCGGAGTCGGCGGCGGGCACGACTCGTAGCCACAGGTCGAACCAGTGGTATTCCGGCTCGCCTTCACCGCTTCCCCACCGGCCTCGGTATTTCAGGCGGGTGATGGTGCCGCTGCCGGGCCGGCCTTCGGCGAACAGCCGCACGAACAGTCGGGCACGTACCCGGCCCTTCGCCAACAGGCAGAACACCGCCACACCGAGCATGCCCCAGAAGTACTGCCGCGGCACATACGGGAGCACCACCGCCACGACGCCCAATCGCAGTACGCCCCACAC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //