Array 1 146205-145243 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QEPV01000003.1 Aggregatibacter aphrophilus strain C2008001229 C2008001229_S17_ctg_1219, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
    146204	    33	 100.0	    32	.................................	TTACCGAAATAAGTATTTTGTTCTCGCAAGCG   	
    146139	    33	 100.0	    34	.................................	TCATCAATTAAATAACGGTAATTATATTTACGAA 	
    146072	    33	  97.0	    34	................................C	AATCAGGCTTGTCTGGATAAAATTAATGCATTTG 	
    146005	    33	  97.0	    33	................................A	GGTGTTGGGGAGCAAAATGAAAGCATATCGTTT  	
    145939	    33	  97.0	    33	................................G	TTAAAACAGAAACTGGTGTTAATCAATCGCCAA  	
    145873	    33	  97.0	    33	................................A	GTTCGACTAAATCGGAGTTTGTGCGGTTTATCG  	
    145807	    33	  97.0	    34	................................G	CCGCTTCGCCTTGCGCACCCGGCATTTGGGCGAG 	
    145740	    33	  97.0	    34	................................C	GATTACACCGATTGACGCGCTATGAAGATATTAA 	
    145673	    33	 100.0	    33	.................................	GTATTAATGCTTCAAATTGATAAAGGTGGTTTC  	
    145607	    33	 100.0	    34	.................................	TGTAATTTTAATGCGCCTAATGCGTCTATCCGAG 	
    145540	    33	  97.0	    33	................................A	ATAGTGCGGTATTAACCGCACAACAACTTGAAA  	
    145474	    33	  97.0	    32	................................A	GGAACAACAATTAATGTAATCGCACCATAAAT   	
    145409	    33	  97.0	    33	................................G	TCAAATAGTTCTCCGCCCACGCCTGCTCGTTGT  	
    145343	    33	 100.0	    35	.................................	TTGATTCCGCAGCTTAATTTTCGTAACTGCTCTGG	
    145275	    33	  97.0	     0	................................A	|                                  	
==========	======	======	======	=================================	===================================	==================
        15	    33	  98.0	    33	GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT	                                   	       

# Left flank :   ACATGAGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGTGTGCAGTATTCGGTGTTCGAATGCGACATCACGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTGATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTAATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCGGCTGATTTTTCTTGCTTTTTTAGGTAGGGA
# Right flank :  CTCATTTTTATTTTTAAACCTACCAAAAAGGCGGCAGCCGCCTTCGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGGTGTATAAGTTTCAAGCCTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTTGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTGTTGACCTATGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGTAGGTCTTGAATATCCGATTTCAATACATCAGCTTTTGGCCCGTAAATGGCTTGAATGCCTGTGCCTTTAACAATGAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCACCCACCAGCTCAGGGTTGTGAACGGTGATACGTAAACGGGTCATACAAGCATCCACCTCGGCAATATTGTTGCGTCCGCCGAGAAGATTGATGATTTGCACCACTTGCGCACT

# Questionable array : NO	 Score: 5.67
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.70,-5.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.87   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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