Array 1 105131-104902 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000011.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 105130 29 100.0 38 ............................. ACGAGATACAGACCTATTGAAGAAGCTATAATAACTTC 105063 29 100.0 38 ............................. CCTAAAATATTTTCAATAGCATATTTTACTCTTTCCCA 104996 29 100.0 37 ............................. TTAAGATTTTATTTAGCTCATTCTCAAAAATAATTTT 104930 29 89.7 0 .........T........T.........C | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATGTTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATCAATTGCACTATTGCGTGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGGTAATGTATATAAAAAAGAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGCTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATACTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTAC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 79493-79267 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000013.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 79492 29 100.0 36 ............................. GTTGCTGTTGCTATTGTCTTTGCTAGTTCTTGCATC 79427 29 100.0 37 ............................. TCTAGACACAACAGAATAAACATAATATATAAGCATA 79361 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 79295 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 92.2 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : AAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCACAGGCAGGAATGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGATTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGA # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATCATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5469-3989 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000025.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5468 29 100.0 37 ............................. TTAATTTATCTATAATTTAAAACGGTGAATTACATAT 5402 29 100.0 37 ............................. TAAAGAGGGGTACTTCGTACTTTTACCACTCAAACTA 5336 29 100.0 38 ............................. AGGTCAAGCATAGATTTTGCAACTGGAAGATAAGAAGA 5269 29 100.0 39 ............................. GTGCAATTCCCATTTTTAGACTGAACTTTAGTTTTCCAA 5201 29 100.0 37 ............................. TAGCCTTTTTTTATTTTACATTATTGTTGATATATAA 5135 29 100.0 36 ............................. TTGACTTAGCATTATTTGTGCGGAACTTTAAATAGC 5070 29 100.0 36 ............................. AAATTCATGGTTGCGGGTGCAGAAAAAAACATAAAA 5005 29 100.0 37 ............................. GTTTTAGAACAGAAAAAATTGTATAAATTGTGGAATG 4939 29 100.0 37 ............................. TTGTAAAATGTAAATAGCATATTAATTTTTCTTTCAC 4873 29 100.0 37 ............................. TGGAGCATTATGTTTTTAGGTTACGGAGCAACATTTA 4807 29 100.0 37 ............................. GGTGATAGTGGAAGTTTTACTTATACTTGGCGTGCTG 4741 29 100.0 38 ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 4674 29 100.0 36 ............................. AAAGTTTTGCGCATTGTATGTGTGCCTAGATTATCT 4609 29 100.0 37 ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 4543 29 100.0 37 ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 4477 29 100.0 36 ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 4412 29 100.0 37 ............................. ATAATCTTGTTATAGACTTTACTATTGTTGTAATAGA 4346 29 100.0 35 ............................. CTTACCAGACCCTGCAACACTAAATGACTTACATA 4282 29 100.0 37 ............................. TCATCAGTATTTGTAAAATGCTTTAACTTATCATAAT 4216 29 100.0 39 ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 4148 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 4082 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 4017 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 99.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1120-692 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000028.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1119 29 100.0 36 ............................. TTTGTATCCGTATCATATCCTGCATATGCAAACCAT 1054 29 100.0 37 ............................. CATCTAAAAACCTATTACTAGCTATATATTTTACATT 988 29 100.0 39 ............................. AGTGAATTTGGCGAACTCGATATAGAGAAAAAAATAAAG 920 29 100.0 38 ............................. CTGCTTTGGCTTTTGGTCGTATAATGCTCCTTATAATA 853 29 100.0 37 ............................. TTAAATCTAGCATCAGTCATTAGTATAAAATTTCCTC 787 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 720 29 86.2 0 ............T......T...A....T | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 97.5 38 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGAATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26669-29144 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000004.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 26669 29 100.0 36 ............................. GAAGGAACTCCAATTAAATCTTCAGCATTACTAGGA 26734 29 100.0 36 ............................. AAGATAAAAACTTCGAATTTGAACAAGAATACGAGG 26799 29 100.0 38 ............................. TTATTAACCTTATCAGAAACCTGACCATCCCAATTATA 26866 29 100.0 36 ............................. TCCATTTGTCTAATGCTTCTAACTCTTTTTTTATAC 26931 29 100.0 38 ............................. TCCAAAATGGGCTTGGAGTTAAGAGTTGTATAAGAAAC 26998 29 100.0 38 ............................. TAATTACACACTCCCTTTTAACGAACATATTTTAGATT 27065 29 100.0 37 ............................. AGTTGCGTAAGGTTGATAAAGTCTTATATCAGTTGCT 27131 29 100.0 41 ............................. AGACTCGACATAGAATCGGTTACTAAATCCGAGGGTTTCAG 27201 29 100.0 37 ............................. ACTAAACCTTTTTGTTTACTTTTATTTCTCATTTTAC 27267 29 100.0 37 ............................. GTTGATGGAACTGTTACAGTTCCTAAGGTTGAGAATC 27333 29 100.0 37 ............................. GGGCAAACTAAAAGGAAATTTATTTTTTATATTTTGC 27399 29 100.0 37 ............................. CATTGTATACTAAGCTTGATATAGTGCAAAATGAAAC 27465 29 100.0 36 ............................. ACTAATTGGGTTAAACAAATGGATATAACTAAATTA 27530 29 100.0 37 ............................. CCAACCCTTCGCACGAATCCGTGCGACGAAATATAAA 27596 29 100.0 36 ............................. ACTTACAATAAAAATTTCTCAACTTACAAATTACAA 27661 29 100.0 39 ............................. TTAGTTTTACCGATTTAGTATTATTCTACAATTAAAACA 27729 29 100.0 37 ............................. CTAAAAGAACGATTGTTACACCTGTTTCTTTTACCAA 27795 29 100.0 39 ............................. TTTAAAAGAACCTAGTTTACCTTCGGTTATAAAATCGGA 27863 29 100.0 39 ............................. AAGACTGTCTTAAATAAAAAGAAAACAGAGCCACAACAG 27931 29 100.0 34 ............................. GTTCATCACTAGCAAAATCAGCTACTACTCTACC 27994 29 100.0 34 ............................. GTTGTCATATAATGACTTGACATACTCACTATTT 28057 29 100.0 38 ............................. GAATTAGAATATGGCATATGGGAAGATATATTCTACGA 28124 29 100.0 37 ............................. GAGCGTGTCGGAAACCCAAGTTCATTAAAATTAATAC 28190 29 100.0 40 ............................. TCGATTATAAATCCTACGTTCATTGTCATTTCTGCTTCGT 28259 29 100.0 38 ............................. TTTTTAAAAAATGTGTTTGATGGTTTAACTGATGATGA 28326 29 100.0 37 ............................. CTACATGGAGTACCAGAAAGTAGTATCACATTTTTAG 28392 29 100.0 39 ............................. AAGATGGGAGGATGATTATAATTAATTTGACGAACGTAA 28460 29 100.0 36 ............................. ATAAAAAAGAGTGAATATGTAAAAGAGATAGCTGAA 28525 29 100.0 36 ............................. GTTTCTGAGATTGTAAATACTTTTGTTGTTTGGTTA 28590 29 100.0 37 ............................. TTTATAAGTCAAAGTAAGTCTATAACATTCTAGTTTC 28656 29 100.0 37 ............................. TGTAAAAATATTGCTTAGCATATTGATATCACTAACT 28722 29 100.0 37 ............................. ACAAGAGGTTTTTCAGCAATATATGTACTTCTATAAT 28788 29 100.0 38 ............................. TCATCAATATTAATTTTGGGAATATCAACATTTTTTGC 28855 29 100.0 37 ............................. GCGATAAGAGATTCGAGTCTTTTTACTGGGCTTAATC 28921 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 28987 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 29052 29 75.9 35 A...........TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 29116 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ========================================= ================== 38 29 98.4 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : TAAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAGAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 835-1655 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000043.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 835 29 100.0 37 ............................. GTAATGACACATAATAATATCTTTTTCATTTTCTCCC 901 29 100.0 36 ............................. ATTTCAAAAGCTATTTGTTTTTTAGTTATTGTGTAT 966 29 100.0 37 ............................. GCAAATGGATTAAATGCAAGATTTTTAGTATATTTTC 1032 29 100.0 38 ............................. GAGGTTATTGGCGTTGTTTCAACTCTTGCTGTTGCTAG 1099 29 100.0 37 ............................. GTAGTTAATACTGTTTTACCATATTCAAAAGAACAGG 1165 29 100.0 37 ............................. AGCAAGATATTGCAAATATTTATATACACCAAAAACG 1231 29 100.0 36 ............................. CAAATTTGTTGCTACATTTTCTTTTTTTTGATATAC 1296 29 100.0 37 ............................. TCAAAACTCGCTTTCTTATTATATTGCTTACAGAATT 1362 29 100.0 37 ............................. AAGTGTGGACAGGAAAGAATAAATTTATGTAAAATTG 1428 29 100.0 37 ............................. TGACATCAGCATCATATATTTCTAAATCTTCTAATTC 1494 29 100.0 38 ............................. TTTATTTGTTTTTGTAATCTGTAATAAGTTAATATTAA 1561 29 100.0 37 ............................. TGTAGATTGGCTTTATGGTATAAATCTAACAAGATTT 1627 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTAATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCTAGACTCAACTCTCTTAAACTATTTTCAGATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAAGCTCTTATTTTTTCTAAGCTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCCTCACATATATGATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 19171-19398 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000052.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000052, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 19171 30 100.0 36 .............................. TGGTAAAATATTACTTCAAACAGGTGAAGCAACAGG 19237 30 100.0 36 .............................. TAAAAGATTGCAATATTACACATAAAAAATAGTACA 19303 30 100.0 36 .............................. GTTTCAAGACCATCTATATATTCAATTGGAATCAAC 19369 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTAAATACACATAGTGTTAAGGTTTAAC # Left flank : GAACTTTGTGTATTAGCAGTAAAACAAAATGGATTATATTTAAAATTCGTGAATGAACAAACTGAAAAAATATGTCTTGAAGCAGTGAGGGAGAATGGATTAGCCTTAGAATTTGTAAAAGAACAAACACCAGAGATAAGCCTTGAAGCTGTAAAAGAGAATGGTAAGGCTTTAGAGTATGTAAAATGGGAAGAATTAAAAGGCGAATTATTAAAAGATCTGCTTGATGAAATTTGTAGAGAAGCTTTAAGACAGAATAGACAAGCAATAGAGTTTATAGAGAATAAAGATAAATACTTAGAAGAATTAAATATTTAAAAGAGAAGGGTATTGTTATTTACTATAGGATGTTAAAGAGATATTACTAAAAAACCTTTATTATAGATTCTATAATAAAGGTTGAGGATTTGACTTAAAGAAAGGTATTAATATTCATAGGAAAATATATCTTGATTTCTTATAATTTAGATAGCTTTTTTTGAACCACTTTTATTGGCGTT # Right flank : CAGCTGTAAACAAGCCATTCCCAAAATTAATAAATACTTGAAATATAGTAATTTCAATTAATTTAAGTCTTTTATCCCAACTAACAATTAAAAATAAGAATATAGATATTTCAAAGTCTATATAAATTAACTTGGGATAATTTGATTATATCACTATATAAATAAATTTACAATATTTAATATAAACAATAAAAATGATGTAAATTTTATAAAAATAATATTGAAAAGGGGGATATATATGGAATAAGTTTAAATGGGATAAAAGAAATCCCTGGGAATTAAGAAATGAAAAAAACAAAATTATGAGATGTGCATAGAAGTAGTAAAGCGACAAGAGTGTTGCTTAAAGATGTAAGATGGGGTGAGCTTAACTTAACTAAAGAGCAGTTATATAATTTATATCTTACAGCAATTAAATTATGAGAATCTAATTTAAAGTTGTAAATAAACATTTATAGAGAAATATATTTTAGATTCTTGAAAAAAATTATAGAATTTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACACATAGTGTTAAGGTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 25496-25139 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000010.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 25495 29 100.0 36 ............................. AAAGGAATAGATGCAATCAAAAAATTAGGTGGCACA 25430 29 100.0 37 ............................. AAAGGATTTAATGAGGTTCAAATAACAACTAGTGATT 25364 29 100.0 37 ............................. TTAGCTGTGCTATTCATAGTACTCATAATTTCATTAA 25298 29 100.0 36 ............................. AAAGAAGAACGAATAAAAATTGAAACTAATGTAAGT 25233 29 96.6 37 ...............A............. GTCGGACTTATTATCATAGATATCCCTTTTGCCAAAA 25167 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATAAAGAGTCGACAGATACTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : ATTGTTTTAAATTGATTAAGTACATCTGTTGATTTATATTATATTAACTATGTATTGTACAATTAAATTAAAAAATATATTTGAGTTAGAGAGGTAGTATTTTATGTCGTTATTTGGAAGTAAAATTACAAAAGAAGAAAAAGAGAAAAATCGAGAAGAAACTGCAAAGTATTATGAAAGACTTAAAAATATGACAAAAGAAGAAAAAAAAGAGTATGAAATTCAAGAATTTATGAAGAAATATCAGTTAGAAAATTTAGATGAAAAAGATTTAATAGTGTTAAAGAGAATAGCAAGTGATTTGTTTGGAAATGGTCTTATTAAGGCAGGTATGGCTTTAAGCTTTACTGATGCAAAGGAACAAGCAAAAATAGGATACCTTAGTGCTTTAACAGAACAAAATTGGATGATAATTAGACAGTTAGCTCAGTTGAATACCAATATAGAAAAACTTATAGAAGATAAAAAAGAATAAATTGAAAATAGCAATACAGACACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 106235-105877 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000010.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 106234 29 100.0 36 ............................. ATCGTTCATCATTTTAGAAGCTTCATTTATTGGCAC 106169 29 100.0 36 ............................. TTTAAAGAACTATCTACAGAGGAATTAAAAAGGTTG 106104 29 100.0 37 ............................. GATGTAACACTTGTAGTTAAAGTATCTAAAGCAGATG 106038 29 100.0 37 ............................. GTAACTCTAAAAGCGGTTTTTGTATCTGCAGGTACTG 105972 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 105905 29 89.7 0 ........C........C.....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGCGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATATTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7535-7040 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000008.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7534 30 100.0 38 .............................. TCTCCTTTTTGACTATGGGTTTTGACCATTCTGTATAG 7466 30 100.0 36 .............................. TTATCTACAATACTATAGTCTATAGTACAACCTTTG 7400 30 100.0 36 .............................. TTTGCCATTCCGTTTTTTGCAACAAAAACATTATTT 7334 30 100.0 36 .............................. TTGATACCCTGCTCCAGTCCCTTTGAAATAAAATTC 7268 30 100.0 35 .............................. AGAGGATTTAATATAAAAAGAGGTCGTGAATACAG 7203 30 100.0 39 .............................. AGTTCTTTTATAAGAAGTGTGTCACCATCTCTAAGCATA 7134 30 100.0 35 .............................. AACTTAATTCCTTCGCTTTCCAAAATTCTCTCTTG 7069 30 86.7 0 ........C..............A....GA | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 98.3 37 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CTTTTAATTCGTCCCACTTTACAAATCTAAGAGCTAAGCCATCTTGACTAACTGCAATAAAACATAAATTATATATCTTCTCCTTATTTAGATTAAGTTCATCCCACCTTACATCTTTAAGCAATCCCCCTTGTCGCTTTACTGCTTCTATACACATCTTATAACTTTGCTTTTGCATGTGTGCCAATCCCCATGGGTATTTTTTTATCCACTCTAAATCTGTTTTATGCATTTACCTATCACCCTCTTCTTATTTTCATAGTATTATATGTTATACTTTAATTTTATTTATAATAATCATACCATTTTTATTGTTTATATAAAATATTGTAAGTTAATTTACTTAGTGATATAATATAAATTATCCCAAGCTAATTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTAGTTGGGATAAAAAGATTAAATTAATTTAAACTACTGTATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AGAAGCTATCTATTAATTTAGATAGCTTCTTTACTATTCAAACTCTTTTAAGAAATCAACATAAGTTTGTCTATGAACATTAACACCTTTCTCTTTGTCAAAACCACCATCTGTATTATATATCCTATTAATAAACTTTTCCTTAGTAATATTGTTTTGGCATCCTACTGTAAATAACCACTTATTATATCTTTTTACTGCGAATACTTCTCTGGCCTTTCCTTGCTTTTCTAAATATTTAACACCAAATTCATCTAAATACTTTTCTTTAGCATTTACATACTTAATAGCACATATATTCTGCTTTAATGCTTCCCTACATATTTCATCTGTTTGTTCTTCTATATATTGTATGGCCAAGCCATTTTGTTTTACTGCTTCTATGCATATTTCGTAAAGTTGTTCTTTTGAGAATTTACCTTTTAATTCAATCCAATTTACATAATCAAGAGCACTACCATTTTGTTTTACTGCCTCTAAACACAGTTTTGGAGTTTGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 8647-8418 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000008.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8646 30 100.0 36 .............................. ATACTTATAAAAATAAAATAGTACTAACTTAATAAG 8580 30 100.0 36 .............................. AGACAGGAGAAGTAATTGAATATATTTCATCTTATA 8514 30 100.0 37 .............................. TGAATGAAGAACTTTTCAAAGACAATTTGAAACGACA 8447 30 86.7 0 ...............T.......A.A...A | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 37 ATTAAACCTTAACACCATGTGTATTTAAAC # Left flank : CTCCAAAAAGCGGGTTTTTGGACATTATCTGGTTTTTATGGAATTCTCCTTGTTGTGGTCTTCCATTTGCATCTTGCGTAGACATATTCCAAGTAATTCTACTGTTTTTTATTACAGTATCTCCTCCCCCTGAATCATCTCCACCCCAAGCGGAAGATTTTAGGGAATTTATATTAAATGCTGTTAGTAACCCTAATAGAGCTAAAACAGGTAAAGTTATCTTTTTTCTATTCATTATTTTCACTTCCTCCTAATTTTTTTATTTTATATAATATAAAGCTACTCTATTTTTTATAACTTTTTTACATGCTATTGTTTATATAAAATATTGTAAGCAAATTTACTTAGTGCTATAATTAAATTATCCCAATCTAATTGATGTATTATTTGGAATATCTGCATTTCCATTTTTAGCTATTGGTTGGGATAAAAAGATTAAATTAATTGAAACTACTGAATTGTAAGCATTTCTGAAATTAAGAAATAACTTGTTTACAGTT # Right flank : AGAGCTATCTAAATTAATAGATAGTTCTTTTTATTATTGTTCAAACTCTTTTAAGAAATTAAGATATATTTGTCTATGAACATTTATTCCTTTTTCTGGGTCAAATCCTCCACCTTTAGTATAAATCATATCAATAAAAGCTTCTTTATAAAATTTATAAATAAAAGTTTCTTTAGTAATATTATCTTGCCATCCTATAGTAAATCTCCATCTCCCATCTTCCTTTATTGCCATTACTTCTTTAGCCTTCCCCTGCTTTTTTAAATATTTAATATTAAATATATTTTCATATTTTTCTTTATCTTTTATATATCTAATTGCATATTTATTTTGCTTTATAGCTTCCATGCATATTTTATCGAGTTGTTCTTTTGAGAATTTGCCTTTTAATTCGTCCCACTTTACAAATCTAAGAGCTAAGCCATCTTGACTAACTGCAATAAAACATAAATTATATATCTTCTCCTTATTTAGATTAAGTTCATCCCACCTTACATCTT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACCATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 12060-12728 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000008.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12060 29 86.7 35 A...-.T.....A................. CAAAGAATTTAGAATTTGAAATTAGGGGTAGCATG 12124 30 100.0 33 .............................. ACAGGATTATTATAATGAATATAAATAATGTTG 12187 30 93.3 37 ............AA................ GGATGAACTGTCTTAGCCTTCTTACAGATCCAACAAA 12254 30 100.0 36 .............................. GGGTATAATTAATGCAGAAGATACTGGAATTTATAT 12320 30 100.0 37 .............................. ATGTATATAATAAAACAGACAATTTAGATCCAACAAA 12387 30 100.0 35 .............................. TGTAACATTTACTAAAAAATTGAACATTTAATTAA 12452 30 100.0 35 .............................. GATAGTGTTGTTGCATTTGGTTTATTTGGGAATTC 12517 30 100.0 36 .............................. TGATGTAAGTAATAATAAAATAGATACAAGTCGTTA 12583 30 93.3 36 ............AA................ CAAAAATAACTGGCATATATTGCTTTGTACAAGAAT 12649 30 90.0 20 C...........A..............G.. ACAGAAGCAAGCAAGACAAC Deletion [12699] 12699 30 93.3 0 ............AA................ | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.1 34 GTTTAAATACACGTAGTGTTAAGGTTTAAT # Left flank : AGAATATAATACTAATGCACTAACAGGACAACCAAAGGCTTGGGATACACGAAATACAAGTACAAGTAAAGGTTTAAGTGTAACTAACCAAAATATGGCTCCAAACATTTATAAAGATATATATGTAAAAACAGCAGATGGGAAGACTTTATCTGCAACAGGAATTTTTGGAAGCCAAAAAGTTTTTGATGTAACAGTTGTAAGTACAAATGCAGATAAGACAGTTTTAAGATATACAATGCAGAAAAAATCTAAAAATGGAGTAGAAGAACCTATAAAGATTTACACAGGAACTAATACAAAAGACGGATTCTATAGCTTAGATGTGTGGACTCCAGAGCTTACAGGGGTTGGAAGCACTAAATCTAAAGAGAAATTGTGCGATGAAAAGAATCTTGAGTTCGAGGTCAAGGGAAGTATGTGGGACGACACAAATGACCATATAGTGCAGTAAGAAATAATAAAAAAGAAGCTTCTATAGAGATTATAGAAGCTTCTTT # Right flank : TTTATGAATATGGCACTACTTATAAATCCTTTAAAAGCCTTTTCTAAAATTAAGAAATGCTTGAAATATAGTACTTCCAATTAATCTAAGTATTTTATCCTAACTAACAGTTAAAAATAAGAATGTCGATATTTCAATATATATATAAGTTAGCCTGATATAAATTAATTATACCATTGTATAAATACACTTGCAATATTTTATATAATAAATAAAATTAAGAATTATTATAAAAATATAAAAAATTAAAATTATTTTATTTAATATATTTTTAATTTATGTAAGTATTATGGTAGTATATTTACTATAGATAGTAAACCATAGAATGTGTAATTTAAAAGGAATAAAATTTTAAATATGAATTTTGGAGGGGAAATTTTGAATATTTATGATGATTTTTATAGGGGAATGGATCCTAATGAATGGGAATTTTTTGCAGTAGATTTTTTAAAAACAGCAGGTTATACGATTTTGGATTTGCCAACTATTGGTCCAGATGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACACGTAGTGTTAAGGTTTAAT # Alternate repeat : GTTTAAATACACAAAGTGTTAAGGTTTAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 15934-16985 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPEL01000008.1 Clostridioides difficile strain 7468-NonSp/ST97 LCH7468_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================= ================== 15934 25 92.0 25 T.C...................... TATTTAACTGCTTACCTCGGGTTTA Deletion [15984] 15984 25 96.0 155 ........T................ TCACTGTAAACAAGCCATTTCTTAATTTTAGAAATGCTTACAATTCAGCAATTTCAATTAATATACGCTTTTTATCCCAGCTAACAATAAGAACATAGATATTCCATTGGGATAAACAAATTTACAAATAGTAAGTAAATAGTAATCTTCATTTA 16164 25 100.0 41 ......................... CTAAACTTACACTCGAATTTCCTGTTTCAATATTGCATTTA 16230 25 88.0 40 ......T.T.A.............. GCAGACAGTTATGCAGGTTACGTTTGTATAATTGAATTTA 16295 25 88.0 40 ......T.C.A.............. CCAAATAAGAATAGTGCTAAATTTATAGTAATTCAGTTTA 16360 25 88.0 41 ........T....C....A...... GGGGTATATTTACCTTATCATTTCAATACTTTTTTGGTTTA 16426 25 100.0 20 ......................... ATTGCAATCTTTCAAATTTA Deletion [16471] 16471 25 96.0 41 ........T................ TAATATAAGTAACAATAAAATAAATACAAATCGTTAGTTTG 16537 25 100.0 40 ......................... TAACTGTAGCTATTTTATTTAGAAAGGCTTCTTCTGTTTA 16602 25 92.0 41 .......GT................ ATTCCTATCAAAAAGTACTATTCTTTCAGTCCCATAATTTT 16668 25 100.0 42 ......................... CTAATAGTAAAGAGTTAGAGCTATTTAATAAGTTCTGGTTTA 16735 25 84.0 201 ......T.T.A............T. CACTGTAAACAAGCCATTTCTTAATTTTAGAAATACTTATAACATAGCCATTTCAATTAAGCTTTTTATCCCAACTAACAGTTTAAAATAAAAATGTAGATATTTCAAATGCTGTATTAATTAACTTGTAGTAAATTAATTATATCACTAAGCAAATCAATTTACAATATTTTATATAGTCAACAAAAATGATATAATAAT 16961 24 68.0 0 T...A.A.T.A..C...-.....T. | A [16963] ========== ====== ====== ====== ========================= ========================================================================================================================================================================================================= ================== 13 25 91.7 61 AATACACAAAGTGTTAAGGTTTAAT # Left flank : TAATAATAAAGATTGTTGGGCAAGTCAAAAATATCTGGCAAAAAAAATTGGGAAAAAGGATCATAGTGCAGTATCAAAAATGACGGATAACTTAGTTGCAAAAAAATATATAACTAAAAAAACAATAGAAAAAGATAATATTACACATTGTATATATAATTTAAATTATTAAAAGAGTATTTATAATGGATATAACTAATAAAAAATAAGTTTTATAAATATAGCTATCCTCTAATATATAGTTGTAAATATTATGCTATCTTTGGTCCTAAATATAGAAGAAAAGTTCTTAATTAGATTCTTGAAAAAGTTTTAATAATATAATGAGGAGTAGTTCACAACTAAATAAACTTTTAATAGGTTTACTTGCATTTAATTACACATAGTATTAAACTCAACTATTAATGTAATATTTATAAAAACAAGTAATCTGGGATTTGAGGCTAATAGAGAAATGTAAAAAGAAGCTTCCTTAATTGCTATAGAAGCTTCTTTTATAT # Right flank : TATAACTATAATATTATAAAAATAAAATTGAAAAAAAGGAGAAGCAAATGGAGAAAATAGGATTAGAGTGGATAAGAAAATTTCCATGTGATTTAGAATTTGCACAAACGCAAACTTATGAAATGTGTATAGAAGCAGTAGAGGAAAATGGACTGTTGCTTAAAGATGTAAGATGGGATGAACTTAATTTAACTAAAGAACAGATATATAAACTATGCCTTATAGCAGTCAAACAAAATGGAGAGGCATTAGAGTATGTTAAAGTACAAACGGAAGAGATATGTATTGAGGCAGTTAAAGAATATGGATTAGCTCTTCAGTATGTAAACAATCAAACTGAAAAGATTTGTCTTGAAGCAGTAAAAGAAAATGGAGGAGCTTTACAGTATGTAAACAATCAAACTGATGAAATATGCACAGAGGCAGTTAAAAATAATGGGTTGAATCTTTGTTATGTAAACAATCAGACTGAAGAAATATGTTTAGAAGCAGTTAAAGAA # Questionable array : NO Score: 4.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-1.17, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATACACAAAGTGTTAAGGTTTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //