Array 1 2163249-2164535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043926.1 Acidithiobacillus caldus strain MTH-04 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2163249 28 100.0 33 ............................ CAGAAAATACGTGTCCGCGCAGCGTTTCTGGCG 2163310 28 100.0 33 ............................ TCTGTCCACTTCGTGGTTTACCACTTCGTGGGC 2163371 28 100.0 33 ............................ CTGCCTCGGGTCGCCAACACTAAGTGTTCTGGC 2163432 28 96.4 27 ............C............... CTATTCGACGTAAGCCAGCGCATTCTC 2163487 28 92.9 33 ..............C........G.... GGATGGTGAGGTACGCGCAGACGCTGAGCTTTC CA [2163490] 2163550 28 82.1 33 CCA...........C........G.... AGACCAAATTTGACGGTCGGCAGTGGGACACGG 2163611 28 92.9 27 .............AC............. TGGGGACAAAAGGAATGTCCACGCGCA 2163666 28 96.4 33 ............C............... CGGCGAGGAGCACCTTCTCGAGGCCCATAACCC 2163727 28 89.3 33 .....T......C.........G..... TATGGTGACGCCACCAAGGACGACACCTCCTTC 2163788 28 85.7 33 ...T........CA.A............ TTGAGATCCCCGAGGGAGCGACAGACTGGAACG 2163849 28 100.0 33 ............................ TGATACCCAGATCGACCGGGTTCTGCGCCACCT 2163910 28 92.9 33 .......T...A................ GATCATGACCAGCGGCGGTGTCCTCAAGGGCAT A [2163922] 2163972 28 92.9 28 .............AG............. TATCTGGTTGCCAAGGCTAAAGATACCG 2164028 28 96.4 33 ............C............... CATCAAAGAGGGTTCCTCGCGAGATTTTCCTTG 2164089 28 96.4 33 ..............C............. CGGCGAGGAGCACATTCTCGAGGCCCATAACCC 2164150 28 96.4 26 ............C............... GTGATAGATAGCCATGCCTGCTCCTG Deletion [2164204] 2164204 28 96.4 33 ..............C............. GCTGGCGCAAGGACTGGCAGGCAAGCGGGGCTA 2164265 28 92.9 33 ............C..A............ TTGAGATCCCCGAGGGAGCGACAGACTGGAACG 2164326 28 89.3 33 A....T.....A................ TCCACCGGCGGCCAGGTCTCGTAAGGATCCGTC 2164387 28 96.4 33 ..............C............. TTCCGAGAAACCGGCAACCACCTGGCTGTCGGG 2164448 28 92.9 32 ..............C........G.... CCAGGTCTCGATTTCCTTGTCGTTTTTCGCTG 2164508 28 75.0 0 T............AG........TTCG. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 93.3 32 GTCGTCCCCGCGTGTGCGGGGGAAAACC # Left flank : ATTCGGTGGACGACCGGGATTTCCTGTTCGCGCCGTACGGGGAATCCATCGTGTTTCGTTCCCGTTCGGAACCCTTGCCGGACACACACGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGCAGGTCGAGCCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCGGTCCTACCGGAGCGGCATCGGACGGTACAAGGCTTTTGGGTGCGGGATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGCCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGA # Right flank : CACCAAAATCGGTGTTTTTGTTCGTTTGATAAAAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGATCGGCCTTTTCGTCGGACGACAAGGGGGCGCCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGTTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGAGCCATACGGGTGGTGCAGGAAGCCCTGAAGGCGCAGGGGAAAAGCCTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAACGGAAAAAGGACAAGGGAAACCCCCAAGGCCGGAGTAACGGCAAAACGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGCCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGCTGCCCAACGCGCAGGGGCA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2165595-2166655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043926.1 Acidithiobacillus caldus strain MTH-04 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 2165595 27 100.0 34 ........................... CGCCGACAGGCTGGCCGCGCTAACGGCTGGTTGC 2165656 27 100.0 34 ........................... CCCACAAGTCGGCCACCGGCAACACGAATCTGGG 2165717 27 100.0 34 ........................... CGTCATACCAAGCCTCTGTAGCATGGTGGATGCC 2165778 27 100.0 34 ........................... CGTCCCAAGTCCGCGGCGCTGGAATATCTGCCGC 2165839 27 100.0 34 ........................... CGCGATATCAGGGTGTTTCTGGGGTCTCTGTTCT 2165900 27 100.0 34 ........................... CCGAAGATGAGGCGATAAGTCCAGACGACGCACT 2165961 27 100.0 34 ........................... CGCGACTGTGGGAAATTCTTACCGAGCACCAGCC 2166022 27 100.0 34 ........................... CGTCATGAAAGCGTCTACGACCTTGAATAATACC 2166083 27 100.0 36 ........................... CTCTTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 2166146 27 92.6 33 ..........T..............C. TGGGGTCCAGCCCGCGGCCTTGCAGCTTGAGCC 2166206 27 88.9 27 .............AT..........C. CGTTCCGACGTAAGCCGGTCAATCATC A,G [2166209,2166230] Deletion [2166260] 2166262 27 100.0 36 ........................... CCGCCTTGAGCTCCCTGGATTCCGCCATGTGGAGGA 2166325 27 96.3 34 .............A............. CGTACGCGGCTCATGCACACCATTCCAGCGATGG 2166386 27 92.6 32 .........................CT TTTTGCAATCCGCATTTCGCATTTGCTGCGCT 2166445 27 85.2 33 T..........A..T..........C. TTGCGGGGTTGTCTCTGTTGGAGATTTTGGGAA A,G [2166455,2166468] 2166507 27 92.6 34 ...A..........T............ TATGCAGTGGCTCGGTGGTTCGCGGGCCAATAGG 2166568 27 92.6 32 .............A...........C. CGATTTGGTAGCAGACCATCTGGTGGATAATC G [2166591] 2166628 27 88.9 0 .G.........A..T............ | T [2166631] ========== ====== ====== ====== =========================== ==================================== ================== 18 27 96.1 34 GTCGTCCCCGCGTGCGCGGGGGAAAAC # Left flank : CTTGACCAAGGACGAGGCGGAAGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACAGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTGCTGGCTGGTCTGCGCTACTTCGCCGGCGATCCGGTCATCGGCGCGCACAAGGCGGTCGGGCGTGGTGAGCTGGCGCTGGATCTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGACCCCAAAGCGAGGAAGCCGGCACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGCCTGCTGGCCGAGCATCTGTCCGAATTCGACCGGCTGGCGAAAGCGGGCTTTCCGGGAATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGCTAGA # Right flank : CCGGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTGGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCCGCATGCACCTGCAGGTGTTCCTGGTCGTGCTCGACCAGAAGTATCCCGTACACCTGCAGGGGCTGTCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGAGCGTGTTGCGGACGTTTGCCCGAGCACGCGCACACCGTTTTCTTCGAGTATCTGTACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGACCGCTTTTCCATGGTGGCCTCCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //