Array 1 25840-26520 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000025.1 Leptospira noguchii strain IP1605021 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 25840 37 100.0 37 ..................................... CGATTGTGAGAGTAGAATATCACGACGTGTGGGTTAG 25914 37 100.0 34 ..................................... TTTGGAGAGGAGCAACACGGGAACTACTCTCTTT 25985 37 100.0 34 ..................................... ATTGATATAACAGATACGTCGAAAGAAATTAAGA 26056 37 100.0 35 ..................................... CCATTCCCCACAACAACAACCCGACCAAAAATAAA 26128 37 100.0 35 ..................................... TCGTAAAATATACGTAAGCATGAAAGAATTAAGAT 26200 37 100.0 34 ..................................... TTTCCCGGAACTCGGGGGAGTTTTTTGATTTTGT 26271 37 100.0 33 ..................................... TGATAATTTATCAGAATCGCTTAGAAGTTTATT 26341 37 100.0 36 ..................................... AGCAATGGCTCTCCAATCTGGATAGTCAGTCAAAAC 26414 37 100.0 33 ..................................... GACATATTCGAATTCAACGGTTATAGATATTTT 26484 37 97.3 0 ...........................C......... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.7 35 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : AAAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGGACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAGTTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGCAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : GATTACTTATATAGTTTCCTTGGATTAGTCGCATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGCGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAACGTGAGTTCGACGTAAGAAAATTGGGGCGAATAATAAACTCAATGCAACGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 5319-3520 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000239.1 Leptospira noguchii strain IP1605021 contig239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================== ================== 5318 37 100.0 34 ..................................... GCATTCTGTCATCCCTTGAATCGAATCAAACCAA 5247 37 100.0 35 ..................................... CATCCCAAGTGGATACAATCCGCATATTTCACATT 5175 37 100.0 34 ..................................... CAGACCCGCAAGTAGTAGCCCTTCAATAATCTTG 5104 37 100.0 35 ..................................... TATAGTATTAGGAAATATTAATGTTTTTTAACAGA 5032 37 100.0 35 ..................................... TTAGTTGTACTAGTCTGGTGTTCGTATTATTGTAA 4960 37 100.0 35 ..................................... ATGTATAATAACAATCCGCCAATTGCAACGGCACC 4888 37 100.0 33 ..................................... ATGATTTTGTCCATCATCTCCAAAGCATTTATC 4818 37 100.0 38 ..................................... TTTTTTATTTAAAAATTTGCCTAATGTATTTAATAAAG 4743 37 100.0 34 ..................................... TCAAGTCATAAACATGAAAGCTGTCCAAGAAGAT 4672 37 100.0 34 ..................................... TCAAGTCATAAACATGAAAGCTGTCCAAGAAGAT 4601 37 100.0 34 ..................................... TCAAGTCATAAACATGAAAGCTGTCCAAGAAGAT 4530 37 100.0 34 ..................................... TCAAGTCATAAACATGAAAGCTGTCCAAGAAGAT 4459 37 100.0 34 ..................................... TCAAGTCATAAACATGAAAGCTGTCCAAGAAGAT 4388 37 100.0 33 ..................................... ATGATTTTGTCCATCATCTCCAAAGCATTTATC 4318 37 100.0 34 ..................................... CACAACAGAAACAGTTCATACTGGAAGCGATGTC 4247 37 100.0 33 ..................................... TAGAAATTTGAGTTCAGCCTCTCGTAGTATTTC 4177 37 100.0 35 ..................................... ACCTAACACTGATCAGCCAACAGATTTTTATTTTT 4105 37 100.0 33 ..................................... TAGAAATTTGAGTTCAGCCTCTCGTAGTATTTC 4035 37 100.0 35 ..................................... ACCTAACACTGATCAGCCAACAGATTTTTATTTTT 3963 37 100.0 35 ..................................... ATTTAGAAGAAGAATTTATTGGATGGAAGCTCAAG 3891 37 97.3 86 ..........................C.......... TGTTTTCCAAGTCACGGGGGAATACGTTGACGAGGAGTGGATTGAAACTTTAAGTTTTCCTGGGGTATCAGAGTCCTTATTTGTGT 3768 37 94.6 34 ..........T............A............. ATTGCGTCGTTTGCAACTTGCGAAAGACTTCCTT 3697 37 94.6 34 .......TT............................ AGGTTCGCGTCCGGGAACAACTCTTCCCGGTTTT 3626 37 97.3 33 .......................A............. CCGAGGTCCTTTATTAAAAAGATGGCTCCAGAA 3556 37 94.6 0 ..........T............A............. | ========== ====== ====== ====== ===================================== ====================================================================================== ================== 25 37 99.1 36 GTTTCTTCCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Left flank : AGTAATACGAGTTTATAGAGAATTTTACTAGGTTGTTTCAAAGCTAAAAACTTTGCGAATGTTTACCGACGAGTCAGTCTGTTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCTAAATCTCTAAAATTCGTAAGACCTAAAAAATATTTTTTTTAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTGAGCCGCT # Right flank : GTTGTAGATATCAGTTCCTGCGTATTGAACTACTGTTTCTTTCTCTTGTTTGAAGGCTACATAATAGAAGTGTCTAAAATTCCGTTCCTGAAACGGTGCTACTTTCAAAATTTATAGTACTCTAATATATAAGATGAATACTATTCTAGTGATCGATAGACAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTATGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTGTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGATCGCAAATTGCTAAATGCGATTTAATTTAACGTGAGTTCGGCCTAACGCGAAAGGGATCGATGCGGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 3431-4689 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000259.1 Leptospira noguchii strain IP1605021 contig259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3431 37 100.0 36 ..................................... AATGTATTCCCGTTTTCATCCGTGTTTCTAAAAGCA 3504 37 100.0 34 ..................................... AACGATGTATTTTATCAATGGAAAGATCGATACA 3575 37 100.0 37 ..................................... TTTGTATAACATGCCTCTGCTCTGGCCTTGACATCAC 3649 37 100.0 34 ..................................... TTTATATAGAGTCGCATCCCCTGGAGCGCGGCTC 3720 37 100.0 34 ..................................... CTAAATTAGGTAATTTAAATGACCCTAATTTAAT 3791 37 100.0 36 ..................................... TTTTTTAATTGCTTCGCCAAGTGACCTCGCACGACC 3864 37 100.0 34 ..................................... TTGCTCCGAATCCACACACTTCCGTCTGTGTTCG 3935 37 100.0 33 ..................................... GGAAATTCGTTCCATTCCCTTCCTTCCAACTCT 4005 37 100.0 38 ..................................... AAGTATTCTTTCCAGCCCAGAAATCGGATACCGAACGA 4080 37 100.0 34 ..................................... CTTTTAACAAGTTGCTAATCACATTAGAATTGAT 4151 37 100.0 33 ..................................... CGTCGCGTCCCCGCTCTCAAAATGATTCCTAAA 4221 37 100.0 34 ..................................... ATTAATCAGCTGTACCGGCAGGTCAACCCGGTCT 4292 37 100.0 35 ..................................... TCAGATTGAAATTTAGGAAAGTCTGCATCTACTTC 4364 37 100.0 35 ..................................... GCGAGGACTCAGAGACGTTCTCGCGAAAATCACGT 4436 37 100.0 36 ..................................... AATATAACGGTTTGGCCTATTGTGTTATTACGAATC 4509 37 100.0 36 ..................................... CAGTTACCCTCGAAGATCAAGTTATATTAGTAAAGC 4582 37 100.0 34 ..................................... AGATTGTGTTGAACCGTATTCGTTGGGCGAGCGA 4653 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 100.0 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : AGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTAAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGGTTTTTTGGTTTCCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAACACTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTTGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCT # Right flank : CAATTTAACGACTTTTCGGAAGCAGTTCAAGAAGAATTTCTTTCTCTTATTAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTATAAAAAAGTGTGCAAATTGTTATAAACGATTTGAGCTCAAGTGAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATACAAAATCTATCGTTCAACTTTATAGTAAAATACAATTATGAGGCGCAGCTCTTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCAGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTCAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCAAATAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 29032-27925 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000003.1 Leptospira noguchii strain IP1605021 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 29031 37 100.0 33 ..................................... AGTAACTACAGAATTATTAAAATTATTTAATTT 28961 37 100.0 33 ..................................... CGGATGAAAGGGCCTATGCGATAGGTGCGTTTT 28891 37 100.0 33 ..................................... GATTTAGGCGCACGTTCAGCAGCATTATCAGAT 28821 37 100.0 35 ..................................... AAATGATACTAGTCTCATTTGGGTATTTGCACCCC 28749 37 100.0 36 ..................................... TTTTGTACCTCTTTTGTACGTACAGGGGCGGAATGA 28676 37 100.0 34 ..................................... AATTTGCCTATAAACTCATGCAGGAATATGGCTA 28605 37 100.0 34 ..................................... AATAAATCTAATGCAATAGCCTGGCCGATTGCAT 28534 37 100.0 33 ..................................... CACTCCGTGATCCCGCATTGAGTTGATTTTATT 28464 37 100.0 33 ..................................... TTGCATGTTTTTACCTCGTTTGATGATGTTTTT 28394 37 100.0 38 ..................................... TTATATAGCGCTTGGCGTAGGAATGCGATCCGTTGAAC 28319 37 100.0 35 ..................................... TTGTTTTTTGAGTGCTAACTCTAACGATTGATCAA 28247 37 100.0 35 ..................................... TCGAACCGATACGCACATGATGGATTTAGTAAGAT 28175 37 100.0 33 ..................................... TTTTGATAGCCTTAGTATCGGCGAAAAACTAGA 28105 37 100.0 36 ..................................... TAAATTTTGGAGAAAAGGCGCGCATAACGTTGCCAA 28032 37 100.0 34 ..................................... CGGAGAGAAGCAACACGGGAACTACTCTCCTTAC 27961 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 100.0 34 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGATGCTGAGTTCAGGAGGGGGTTGCTTTAGTTTCATAAAATGTGGGGACTAACTACGAAAATTGAACTAGATTAGTATTGCTTGAAAGTTCCCAAAGTATCAAATGAGACAAAATCTGTGGGAACTACTATAGTTTATTAATATTTTCTAAAGAATGATCGCGTAAAATTCTTTGGGTTTTGGGACAGGCTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCCCTAGACATCCAGTTACTTAGCCGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCGCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAACTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGTTTGAGATGAGTTTCGTTTAAAATTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACCTCTGTATTCAAAATCCTGAAATTATATTTTAGAAAATCAATATATAATTGATTACAAACTATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGATTATTTTCGAGATGAGTTTTACCGATCCCTACAAAATTAAGTACCCGTAAATGCAGTAATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATGAGTAGCGGCTTGTTTTTAAGTTTTTAGTGACTTAATCTCCTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 7905-7153 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000030.1 Leptospira noguchii strain IP1605021 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 7904 36 94.4 36 .....................G.A............ CCCTCGAAAAGCTAATGCGATAAGCCAAAATTCTTC 7832 36 94.4 35 .....................G.A............ CCAAGATAGTTGGAATGATGCGGGTCGCCTCTGAA 7761 36 100.0 37 .................................... CGTCTTTGTATTCGTCTAACGCTGATTTGGTTGTCAT 7688 36 100.0 35 .................................... CAATCATCCAATTAATAAAGATAAGCTTCCGATAG 7617 36 77.8 40 AG..TAA......CT.......A............. CATATATTTGTTATCTGTGATTTTTGATTCTGATTTTTGT G [7596] 7540 36 100.0 33 .................................... CTTTACATCATTTATAGCTCCATGATGGAGATC 7471 36 86.1 33 ...GT........CT.......A............. CCTTGAGAAGAAAGTTCTTCTGCAAGAGACATC G,AA [7448,7463] 7399 35 91.7 32 C.G.-............................... CGCTCGCACACGACAATAGATTTTGTAGTACC 7332 36 83.3 35 ...GT........CT.......A.....A....... CTTCTTGTTGGTCGACTCCATAGCCAATTGGAGCG G,AA [7309,7324] 7258 35 80.6 35 .G..TAA.............-..AG........... CTCCTCTTGTTTATAACAACCTCGAGACCATGGTC 7188 36 91.7 0 ..............A......G.A............ | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 90.9 35 GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAA # Left flank : CAAAGAAAAAATATAATTTTTCGCCTAACATCAGTTAATTATAAGTAGTAGCTTCTCTATTACTTATAATAACGTGCTAAAAACTATATTTCGAAGTTTTGTGTGTTGTTTCTCAGTATTGATTTGTTAAATCGTAATTTGTGGTAGTTCCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACATTGAAATGCTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAACTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCATCCCTATTAAGCCGCT # Right flank : CCAGTATTTTAAGTCTTCTTCTACTTCGAAATATGTTCCTTCTTATTGTTAGAGGAAGCAGACTAAAACTGAACGCGGATTTATATAACGTGAGTTCAGTGTAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTTTTAAACTTTCTGAATCAATTCTAAAATGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAAACAGCGATTTTAAGAAAAAATTCTAAAATGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAAACAGCGATTTTAAGAAAAAATTCTAAAATGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATCCTAAAATTGTGGGAACTCATACTGTTTAGAAATTTGTAATGTGACTTAATCTATGGGAACTACTGCAAACCACGGTTT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAAGGAGTGGATTGAAA # Alternate repeat : GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 19-1270 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000441.1 Leptospira noguchii strain IP1605021 contig441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 19 37 100.0 35 ..................................... ATAAAAGAAATCGATACGACCTCAATTAGGATGGG 91 37 100.0 35 ..................................... GATTTTCTGGCCGGTTAGGATCTAATCCAATCATT 163 37 100.0 35 ..................................... ATAAAAGAAATCGATACGACCTCAATTAGGATGGG 235 37 100.0 35 ..................................... GATTTTCTGGCCGGTTAGGATCTAATCCAATCATT 307 37 100.0 35 ..................................... ATTTAGGCGCACGTTCAGCAGCGTTATCAGATATT 379 37 100.0 33 ..................................... TAAATGAAAATGGTGATTTTTTAGATTTTGCGT 449 37 100.0 33 ..................................... CGTTACAGGGCCTCAGTTCGGGGACTGAATACT 519 37 97.3 34 .................T................... ATCGCGATAACATTCGAATCCGATTGAAACTTCG 590 37 97.3 34 .................T................... CGGATAGAGGAGTGACAAGCAAAGGTCCAAACGT 661 37 97.3 33 .................T................... TTAAATCGCTCATCTTACGCCACCTCATCCACT 731 37 97.3 35 .................T................... CATTTCTCCAGCAATCTTGGAATCGATGTAGGTTT 803 37 97.3 34 ..................A.................. TTTATTTTTATGGGACAATTTACTTTAAGTTAAA 874 37 97.3 36 .................T................... ACGCGATTGGATAGAGCTTAAAGCCCAAGGCAAAGC 947 37 97.3 33 .................T................... CGGATGACGAAAATCAAAAATCGGCAGATACAT 1017 37 97.3 34 ..................A.................. TAATTGCCTGACCGGTATCAGACTCTATAAACGC 1088 37 97.3 36 .................T................... TTGGAGGTTATGACGGCCCCGAATTCTTGAGCACCC 1161 37 100.0 36 ..................................... TTGGAGGTTATGACGGCCCCGAATTCTTGAGCACCC 1234 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 98.5 35 ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Left flank : GGATCTAATCCAATCATTA # Right flank : ATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGAATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTTGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCCGTATTGGCAACATTTCAAGTGGCTAGGGTTTTAGTGCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 18509-18902 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000058.1 Leptospira noguchii strain IP1605021 contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 18509 37 100.0 35 ..................................... GTGAGGATGTTGGTTCGGTTGTCGTAAATGATGCT 18581 37 100.0 33 ..................................... GTAAACATCATTAAGATCAGTATCTTCGGAAAT 18651 37 100.0 36 ..................................... TAGAGGGCCATATAGGAAATAAAAATGCCAATGCAA 18724 37 100.0 34 ..................................... CCCTCCAGATGGCGATTTGTATTTTGCCATCTGG 18795 37 100.0 34 ..................................... ATTCAGATACTGACTCAGATTGCCATTATTTATC 18866 37 97.3 0 ......................A.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.5 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : GAGTTCAGCTGAGTAAATATTTTCATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCGAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGACTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGACTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGCCTTTGTTTAGATCACGCTCTAAACTCAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 17922-18100 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000074.1 Leptospira noguchii strain IP1605021 contig74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 17922 37 100.0 35 ..................................... CTGCGAACCATTGCTTGAAGAAATCGATATTTCAA 17994 37 100.0 33 ..................................... CATTTCGAATATTCGAATTCCTTCATGTGATTT 18064 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 34 ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Left flank : ATAAGCCATAAATTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCGCCAAAATTCTGGACGCTATGGTTCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGCAATCATCTCAACAAAAATGAAAGGATACTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTCACACAAACTTAACAATTCGAAATTCAATTTTCTTGACTTTAAACAGTAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATCGATTAGGACCTTTATAGCCGCT # Right flank : ATAAAAGAAATCGATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGCGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 13669-15528 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCHL01000087.1 Leptospira noguchii strain IP1605021 contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13669 29 100.0 32 ............................. ATAAAAAGCAATTTATTCAATTCGGTAAATTA 13730 29 100.0 32 ............................. TCCATCACAGTCATCTTTTGCAATATCAACCC 13791 29 100.0 32 ............................. ACCTTAAAGAGGACAGAAAACGGTGAGCATCC 13852 29 100.0 32 ............................. CAAAAAGTCGCGTGTAGATAAACGTAGACGCG 13913 29 100.0 32 ............................. TGGAGGGTGGCCGTCTGTAACAGGCTTTAAAC 13974 29 100.0 32 ............................. CAGGCTCATCTTTATGCAAAGCTCTCCCAAAC 14035 29 100.0 32 ............................. ACCTCATTAAGCGTGCGGCGCTAGTGGATCTA 14096 29 100.0 32 ............................. CAACTAGCGAGAGAGGGATTAATTGGATTACC 14157 29 100.0 32 ............................. CGAAAAAAATGATATGCGATACCTACAAACTA 14218 29 100.0 32 ............................. ACAAACAATTACAAACAAATTCAGAGGGGACA 14279 29 100.0 32 ............................. TCGGGCCGGTGGTGGCCCTGGTGACATAATTT 14340 29 100.0 32 ............................. GGAATGAAGGAAACAGGACTCCTGAGTTTGGC 14401 29 100.0 32 ............................. CGAAAAAAAATGATATGCGATACCTACAAACT 14462 29 100.0 32 ............................. TAAGATCTTCCAAGGAAGATTCGAAAATCCTG 14523 29 100.0 32 ............................. GCGGCCCAAAAAAAATTTGGAATTACTATAGA 14584 29 100.0 33 ............................. TTTGGCGCCGGCCGCCGTGATTGCAGGTGCTGC 14646 29 100.0 32 ............................. CGAACACATGGGTGAACGCAACCACAGAACAA 14707 29 100.0 32 ............................. ATGACTATGATGGATTATTGAATATTACAAAT 14768 29 100.0 32 ............................. GGTGGCACCCAAAAGCCAAGGTTAAAAAAACC 14829 29 100.0 32 ............................. CCACTCCTAAACAAATTTTAAAATGGATTGAT 14890 29 100.0 32 ............................. TAATGTCTGAGACTGACTTCACTCTGTTTCCT 14951 29 100.0 32 ............................. CGGTTGAATGCGCAACTGAGTCGATGCCCTTA 15012 29 100.0 33 ............................. TTCCGATCCCCTATCAGGTGATTATGTGATGAG 15074 29 100.0 32 ............................. TAGTCATTACGTTCACCCGAAAACGAGGAAGG 15135 29 100.0 31 ............................. AACTTGAGAGATTTACGGGATATGACGAAGA 15195 29 100.0 32 ............................. TAGACGAAGCGATTACTTACGTATACAACGAA 15256 29 96.6 32 .......A..................... TTCCGATCCCCTATCAGGTGATTATGTGATGA 15317 29 100.0 32 ............................. ATACTTCATGCAGAAACGAACTCCTGTTTACT 15378 29 100.0 32 ............................. TTAATCAAACTTGGAGATCAAATAATTTAAAA 15439 29 100.0 32 ............................. TATTTTCCTCGAATTACGCACTTTACGGAGAT 15500 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTGCACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCTCCAACTGTCCTCAAGACTTTCGTAATAGGGCAACCTCACGACCAACCGCAGTACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTACGACTCGTGTGAAGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //