Array 1 67-934 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRF01000083.1 Shewanella xiamenensis strain SxND_W5_2018 contig_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67 28 100.0 32 ............................ TACTGTTGGAGGCTCGATTGCAACTGTGATGT 127 28 100.0 32 ............................ TTTGATGAATCGAGACATAGACTTGTCAGCCT 187 28 100.0 32 ............................ ACTGGTTTCATCATCCAAATCACCATTACTTT 247 28 100.0 32 ............................ AAGCGAATTTAACGGATATTCAAAAGGCTGAG 307 28 100.0 32 ............................ AAGCCGATTAAGCCGCCTGCCTTTACCTTGTC 367 28 100.0 32 ............................ ACGATGTTTTTTTACGCTTTCATTGAAGGCTT 427 28 100.0 32 ............................ TCTGCTGCTTCTTACGCTGACGTTGCTGCTGA 487 28 100.0 32 ............................ TTGTGGACAGCCTTTGGTGAATACATAACCTT 547 28 100.0 32 ............................ CTTAGCGGAAACCCTAACGCTAAGGCCGTCAC 607 28 96.4 32 ..........G................. AAACACATCCCAGCCTTTGGTTTTTGTTCTGG 667 28 96.4 32 ..........G................. TTGGACTAGATGGTCTATAGCAGGTTGAATAT 727 28 96.4 32 ..........G................. TAGAAGAGATTGAGGCCGCTTTAAACTATCTT 787 28 96.4 32 ..........G................. TTGATACGCACATCATAAGAAAACTAAGAAGT 847 28 96.4 32 ..........G................. AACTTAGGCAGACGATGACGCTATGGTTGCCC 907 28 96.4 0 ..........G................. | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCTTACAGGCAGCTTAGAAA # Left flank : GTTATGAGTGAGATCATAACATTTCTTATTAGGTGGCCAAATTCAGTGTGCCACTACATGGTAGCAG # Right flank : ATCAATAGCAGCACAAATTTGATTTGTTCTTCGTTGATGTAGCCTAATAACATTAAGCCTTTTGGGTGAGGGCTTTTTATACGTCTACATATATTGATTCAACGTTTTTTTGATGCAAGTCAGTGTTAGCGGATTGGGCTGATTTAAACAAGGATGGCTGAGATGAAATTAGGTGTACCTTTCGGGCAGGATAAAACCACTGGCGAGTGGAAAGATGTTGCAGGGGTCGAGCGGGGGCTTGCCTGTGGTTGTATTTGCCCTTCTTGTCTTTTGCCTTTGTCCGCCCATCAGGGAGATGAGCGAGAATGGCACTTTACTCACCACACCAGAAATACACCTAAAGTAGAAATAGTTGATTGCGAGTTTTCTTTTGAAGTTTCCGTGAGGATGATGATCCATCAATTGCTGCGGGAAGGCGCATCACTCAAGTTACCTGCATATTTTAAGCCTGTTAGTGTACCAAAGGTTTTACGAGAACAATTTCCTCCCGAAGTGATGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCTTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22883-29220 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRF01000067.1 Shewanella xiamenensis strain SxND_W5_2018 contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 22883 28 100.0 32 ............................ TTTTGACTTGGGTTGTTGTGTACGTTTGTTCA 22943 28 100.0 32 ............................ GCCGACCTTGTTGATTGCTCAATCGACTACCC 23003 28 100.0 32 ............................ ACTGGCTGACCTGGGTCAAGCCGCGCTAACAC 23063 28 100.0 32 ............................ TGCTGTCCATCCCATATCATCTAGCTTTGGAA 23123 28 100.0 32 ............................ AACTAACCGACATTAAAGGAGCGTTAAATGGC 23183 28 100.0 32 ............................ AAGGCGAAGGCCGAGCACGTTAAAAACAAAAG 23243 28 100.0 32 ............................ CGCCAGATAATTACCCAAATTACACTTATGAA 23303 28 100.0 32 ............................ TCCAGAAGAAAAGCATCATCCTTTTTACAAGG 23363 28 100.0 32 ............................ GTTTAGCAATTGAGTTGCTAAAAATTCCGAGA 23423 28 100.0 32 ............................ TTTATAACGCATACGATACACGGCAAGTCTTT 23483 28 100.0 32 ............................ GTTTTGAAGCCTCTATCATGCCTCGCATGTTA 23543 28 100.0 32 ............................ ACTCGGGCAGCCCATCACCAGGGAACTGAGAC 23603 28 100.0 32 ............................ AACGGCCTATGGCCGAGCCGATGGCGTTCGGG 23663 28 100.0 32 ............................ GCATAGCAATTGGCCAGCGCTGTGACTCTTCA 23723 28 100.0 32 ............................ TGGCACAGTGGCTTGGCCTGTGGCCACATCAT 23783 28 100.0 32 ............................ TGCGGCCTTAGCGGCTTGGCGCTTGCGCGTTT 23843 28 100.0 32 ............................ AGTAAAAAAATCCGTGCGCTTAGTCGATGAGA 23903 28 100.0 32 ............................ AAAAGTTGAGGCTGACACGCTACCATGGCATA 23963 28 100.0 32 ............................ ACTTGAACCCGGCGGCCTTGATTGCGTCTTTA 24023 28 100.0 32 ............................ TTGGTGTTTTACCCGCATTTATGGCTTATTCC 24083 28 100.0 32 ............................ TGCTGGGTCAGGCTCTTGTCCGTCAACCTCGG 24143 28 100.0 32 ............................ AATGCGCCAGTTACAGGCCATGGCTATCACGC 24203 28 100.0 32 ............................ TTCTGATTGATAAATGCCTGAGTTCAATTTTG 24263 28 100.0 32 ............................ AGTTTGACATTGAAGCTGTAACAAGCACTAAA 24323 28 100.0 32 ............................ GCTAAGCTCTAAGGTTTCTGTGCTGCGGTTTA 24383 28 100.0 32 ............................ ATGTCGGTAGGGGGGCTGGTCGGGTTAGCAAA 24443 28 100.0 32 ............................ TGCTCGGCCATGCGCTGATATTCGCGCTCCAT 24503 28 100.0 32 ............................ GTGCCGCTGTAGCTGATTTGGAGTTCTATTAT 24563 28 100.0 32 ............................ ACAATCACCGCCTTGGCATCCTCAGGGATCAC 24623 28 100.0 32 ............................ ACATATCCCGCACTTGCAATAATCGATATAAA 24683 28 100.0 32 ............................ CGTACGTAGTGACGTAGTTTAGTGTGAACTCT 24743 28 100.0 32 ............................ GTCAGGAGACTCTGTGTAATCCTTAACAGAAG 24803 28 100.0 32 ............................ GTCAGAAACCATAGTATCGACTTGGGTTGAGA 24863 28 100.0 32 ............................ GCCCTATTCGCTCCTTTGAGCACCAACAAAGC 24923 28 100.0 32 ............................ TAATACCGCATACACCTCTTGCTGATTGTCGC 24983 28 100.0 32 ............................ ACAATGGCGATGCGTTATCGTCTAAAAACGCG 25043 28 100.0 32 ............................ GCAAACCCTCAACATAACGTCACCACATTGTG 25103 28 100.0 32 ............................ TCAATATTATTTGTTCACTGACGGGTACGATA 25163 28 100.0 32 ............................ AGAACGCGTTACGCGCTTTATTGAGTGTCGTC 25223 28 100.0 32 ............................ TGGCGGCATTCTCGAACGCTGCGAGTGTTAAC 25283 28 100.0 32 ............................ TGCAATTGCGTTTATCATGAACCCAACCTCAC 25343 28 100.0 32 ............................ ACTGGCTGAGCTTTTTCGATGTAAAGGTTTTA 25403 28 100.0 32 ............................ AATACGAATCACACCGACACCCCTCTAAACCG 25463 28 100.0 32 ............................ TCAAACTTAGTGAATTTACTATTTGAAAAAAT 25523 28 100.0 32 ............................ GCCACCATCGTTACGCAGAGTTGAACCCAACA 25583 28 100.0 32 ............................ AGAATCAGCAACTTAACTAGGACTTGAGTCAT 25643 28 100.0 32 ............................ GTGATTATCAGGACTAACAGCGACATGATTAG 25703 28 100.0 32 ............................ GTACTTGCCAATGTTGATGTACATGCTTATGG 25763 28 100.0 32 ............................ GCTGTTCGATACGTTCGACGCGGTGCGTATGT 25823 28 100.0 32 ............................ TGCAAGCGAAACATTCCCGGGTTATACAAACG 25883 28 100.0 32 ............................ AAATAAGGCGATTAACGCAGCATCGCGGGTAT 25943 28 100.0 32 ............................ TTTATCACTTAGCATATACAACCCAGCCGCCA 26003 28 100.0 32 ............................ GTATTGAAATACCGAATGGCTCAATACACAAA 26063 28 100.0 32 ............................ CGTTGAATCCATCACAGCAAATTCAGATTTAC 26123 28 100.0 32 ............................ AAGCTCGCGCTGAACATCGGCCGCCAAATGAA 26183 28 100.0 32 ............................ AAGCTCGCGCTGAACATCGGCCGCCAAATGAA 26243 28 100.0 32 ............................ GTTATCGGCAAAAATCCAGCACTTTTCAACAC 26303 28 100.0 32 ............................ TGTAAAGCTCTCGCCTTTCCTGCTTCATTTTT 26363 28 100.0 32 ............................ TAGCGCAGACGCTAAGGCCGGATAGTTTCTGT 26423 28 100.0 32 ............................ GCTGGGATGCAGGCAAGCGCCGTAACGAGGCA 26483 28 100.0 32 ............................ TGAAAAGATTGGCGCTGCAATACATGCCAGCG 26543 28 100.0 32 ............................ TTACCGTCATTCTTCCCAGCAACAAACACAAT 26603 28 100.0 39 ............................ ACTAACCAAGAACCACTAACCACTAACCACTAACCAAGA 26670 28 100.0 32 ............................ CTGTATTAGCTGCGGGCGCAATACTGGAGCAA 26730 28 100.0 32 ............................ TCAATCAGCCCTTCTATTTTTTTACTGTGATT 26790 28 100.0 33 ............................ CGCAAAGATTGAATCTCAGGGCGGGGTTTTTAC 26851 28 100.0 32 ............................ TACGAAGCGGCAACTAGTGTATCTGATTTATT 26911 28 100.0 32 ............................ TTTAGCGCCGAGAATGGTCAGTGTGCCTTCAT 26971 28 100.0 32 ............................ AAGAAGGTGAAAAGACAACTAAGAAAGCGTGG 27031 28 100.0 32 ............................ TTAAATTTACTGACTCACACGGCGCCATGCTG 27091 28 100.0 32 ............................ TAACGGCAAAGAGAAAGGGATTCAGATAATCC 27151 28 100.0 33 ............................ CGCGTCACACCGCCACGCAGCCAACGGCGCAGC 27212 28 100.0 32 ............................ TTAATTTAGTGGCGGCGGCCGATGCGTTGGGG 27272 28 100.0 32 ............................ GATAGGCTAATTCGGCATATTTGCAATCAAAA 27332 28 100.0 32 ............................ ATCAAACGGAAAATCACGCTTCGGGTCGATAC 27392 28 100.0 32 ............................ GTTAGACGCAATCACACGAGCTTTTAAATCAA 27452 28 100.0 32 ............................ ATAGACCGCCGTTTCTTTCAGTGTTGTTTTAA 27512 28 100.0 33 ............................ CCAACGCGCCCACGCTTCAAGCTGGCGATCCAG 27573 28 100.0 32 ............................ ACCCACCCCGCCAGCTTTACCAATCAGTAAAG 27633 28 100.0 32 ............................ TCAGGCCATTCGCCAACTAGCAGCTCGGTACC 27693 28 100.0 32 ............................ TAGCAGGGACGGGGACTATGAGACAACGATCT 27753 28 100.0 32 ............................ GTTGGAAATATCACCACCACGATAACCTATTG 27813 28 100.0 32 ............................ TCACAGTTCTCTTTGGTCAGCGTTGCGGCCAT 27873 28 100.0 32 ............................ TTGCCTGTGCTTTTGCGTACCTATGTTCACTC 27933 28 100.0 32 ............................ CTGCTCTAGCGCTTTGTTGTAAATGCGCCAAT 27993 28 100.0 32 ............................ AGCAGCGTTAGTTGCATATCCTTCAGCGTTAA 28053 28 100.0 32 ............................ GTACTGGAAAGAAGATGTTGCAGCTTGGTATG 28113 28 100.0 32 ............................ TCTTACATGAACTCACCATACTGGAAAGAAGA 28173 28 100.0 32 ............................ GCCAGGCGGGAAGCATATTGCTAGCGACTGAG 28233 28 100.0 32 ............................ AATTACTCACCATCTTTGCGCAGCTCTCTTTA 28293 28 100.0 32 ............................ AAATAAATGCATAACAAGATGCGCAGCATGGC 28353 28 100.0 32 ............................ ACTATCTTCATCGATTGGTGTTTTGCGTGATG 28413 28 100.0 32 ............................ ACTTTCCCATTCTTGACCACAACGTCTTTCAT 28473 28 100.0 32 ............................ GTCAGGGGTTAAGGCAAATAACGGAATATATA 28533 28 100.0 32 ............................ CGTTTCTAGCAATCATGAAACTAATAACAGGC 28593 28 100.0 32 ............................ TATAATTAAATTCTGGACAATAAGCATAAAGA 28653 28 100.0 32 ............................ AGTCTAAAACGTAGATTTCAGATGGTTCATTG 28713 28 100.0 32 ............................ GACTCGATACCATACGCAGAATATCGCATATC 28773 28 100.0 32 ............................ ATTTTAAAAGCCCCCCCAAACGACCAAGGTTT 28833 28 100.0 32 ............................ ATTAGATTGCACCTTCACTGATTAACTTCTCA 28893 28 100.0 32 ............................ ATATACTGGAGGAATGTTTTGCACCGACAGAA 28953 28 100.0 32 ............................ GCTGTGACTATGCCTAGTAAGACTGTAAATCT 29013 28 100.0 32 ............................ GTTTTGATGGCTTGGGCTGTTTGCCTATCAAC 29073 28 100.0 32 ............................ GAAAGCCCGACCGTCAAGTGTTTGACCAAAAA 29133 28 100.0 32 ............................ AGGTACAAGGCCGCCTATAGTCGGTTTTCCAT 29193 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 106 28 100.0 32 GTTCACTGCCTTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAATAGCAAGTTTCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGGGCTTCGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAGTATTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGTAAGTTTTAACCCTTTATTTTTTGCTCTTTAAAAATATATTTTAAATACAACAAGTTACAATGGGTGGTTTTTAATAAGGTAAAAAAGTAATTTTTATCCTAACTGCCTGTTGTAACTTATTTTTATTGATTTAGTCTATT # Right flank : TCAGTGGAGAGTTGATATTTATCGTGGTGTAGTGGTCAACTAAATTTGGCCACAGCTTTAGAATCTTCCCAAAATCTTCGCTCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCTTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCTTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //