Array 1 28911-30343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUQ010000010.1 Riemerella anatipestifer strain 20200118E1-3 NODE_10_length_69839_cov_253.813910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 28911 47 100.0 30 ............................................... CATGCAGTACGGCATGGCGCAATATGCGCA 28988 47 100.0 30 ............................................... AATCTGCTTGCGGGGCGCATCCCATCTGCG 29065 47 100.0 30 ............................................... AGCCCACAAGGTGCGAAGGTATAGGCAAGG 29142 47 100.0 30 ............................................... CATAAGGTTCTACATCGCTAAAGTCTTCGG 29219 47 100.0 30 ............................................... TTGTAGAGGGTTAAATGGTGTTCGGGGGTA 29296 47 100.0 30 ............................................... ACAAATGCTTTGTTGAGCAACAATATAGTT 29373 47 100.0 30 ............................................... ATCCAAAACGATTTACAGCAGATTGCGAGT 29450 47 100.0 30 ............................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGA 29527 47 100.0 30 ............................................... TAGTATTGGGATGTGTTATTTAAAAAGTGT 29604 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29681 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29758 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29835 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29912 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 29989 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30066 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30143 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30220 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30297 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 98.5 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 5092-3493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUQ010000019.1 Riemerella anatipestifer strain 20200118E1-3 NODE_19_length_5290_cov_254.837905, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 5091 36 75.0 80 ....................CTTA..T.T..A.G.A CTCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG T [5072] 4974 36 69.4 83 .......G...........TGTTAC...T..A.G.A CTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT 4855 36 69.4 82 .....T.............TGCTAC...T..A.G.A CTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA 4737 36 72.2 82 ...................TGTTAT...T..A.G.A CTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA 4619 36 69.4 81 .......G...........TGTTAC...T..A.G.A CTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC 4502 36 72.2 81 ...................TGCTAT...T..A.G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 4385 36 100.0 30 .................................... ATAGCAGTAGAACCATCAAACGCTGTGGCT 4319 36 100.0 30 .................................... CGGCAACAAAAGAAGGAGAAGAACAAAGCA 4253 36 100.0 30 .................................... AGCAACATATACGAAAATCCAGAAATCTTA 4187 36 100.0 30 .................................... GACGAACCCTTGGGATATCTTGGTGGCTCC 4121 36 100.0 30 .................................... TGTGCTTCCTACAACGAGTAGCGTTCCTTT 4055 36 100.0 30 .................................... TTAACTAAGTTACCTAGAAGTATAAATGAA 3989 36 97.2 30 ...................A................ TCTGCATCTACGAAGGTGATGAGGAAAAGG 3923 36 97.2 30 ...................A................ CAATAGGACCTATTATATTTACAACAACAG 3857 36 97.2 30 ...................A................ ATTTTGAAAATATAGAGGCGATAAGCCTTT 3791 36 97.2 30 ...................A................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 3725 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 3659 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 3593 36 97.2 29 ...................A................ TTAGGAGCAAATAAGCTGTATTTATTGGT 3528 36 66.7 0 ...................TGCT.T...T.ATTGTT | ========== ====== ====== ====== ==================================== =================================================================================== ================== 20 36 88.6 46 GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Left flank : AACTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAATGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGG # Right flank : ATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCTT # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:-1.11, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //