Array 1 15130-9533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020477.1 Acidianus manzaensis strain YN-25 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================================================================================================================================================================= ================== 15129 25 100.0 39 ......................... TATGCTTTTACTGGGGCATGAGGTTAAAAGGGAGGCGGA 15065 25 100.0 39 ......................... TTTTTTCCACCCAAGAGAAAAAAGAGTTTAAGAATTAAG 15001 25 100.0 40 ......................... TTTAATATATGAAAAACGGTACAGCTGTCGCAATCATCAT 14936 25 100.0 41 ......................... AATAAATGATATTCCAGAAATGAAGGGTAATGTATTGCTTT 14870 25 100.0 41 ......................... CATCTAAATGAAATTTCAGCCGCGAAATTACAATTTTCCAG 14804 25 100.0 40 ......................... TCAATTAATAAGGACTTTGAATTTGTTTCGTTTTTTGCGT 14739 25 100.0 40 ......................... TATCAGAATGCATTAGATATAATTAGAAAACTACAAAACT 14674 25 100.0 42 ......................... AACTGAAGAAGTTGATACGGAATTTTTGCAGGTTGTAAATTC 14607 25 100.0 40 ......................... TATATGTATTATGTCTCTTAGTCCTGGAAAAAACCAATCT 14542 25 100.0 38 ......................... TTCTTTCTAAAACTTCAATTTTCATCAAAAGACCAAGA 14479 25 100.0 39 ......................... TTAGTTTAATTCGTATGAGAGAAATTTATATTGTTCATT 14415 25 100.0 37 ......................... CCTGATAAAAATTGAGTGGAATATCCACTCTACTTGT 14353 25 100.0 37 ......................... GTGTTTGTCTGTATTTTGTAGAAGAGATTAATAAAAT 14291 25 100.0 42 ......................... ATGGACTGGTTGATGGACGAACTAAACACATTCTTCATTGCA 14224 25 100.0 40 ......................... TAAACTTACGTAGCGTTATCTATAATTAACCGAAAAACTT 14159 25 100.0 40 ......................... TTATTTACAACATACTACTTCTTCTTTACAACCTTCTTCT 14094 25 100.0 35 ......................... CGTATGTCAGCGTAATGTGTACATAGACTTCCTGA 14034 25 100.0 41 ......................... ATTCATCAAGACCGTATTCAGCAGTTTCAATGTCATGTTTC 13968 25 100.0 40 ......................... ACGCTGTCTGCTAATAGTGTTATTACGTTTTTAATGTCGT 13903 25 100.0 42 ......................... GTATGACTGGAAATGTTGACAGTACAGCTGTTGAGATTGTAT 13836 25 100.0 39 ......................... AATGAATTGAGATAATTTCTTACAGATTGCGATGAGACT 13772 25 100.0 41 ......................... GGTTTACAGGTTGTCCTTCTACTGCAGGCTGACCAGTGCCT 13706 25 100.0 40 ......................... GAATTTCATCCTGAGTGAATTTTATTGACGGATTTGGAAT 13641 25 100.0 42 ......................... TTATTCTAAGAAAGCGATAATAATCTCTACAAGAAGGTTCAA 13574 25 100.0 41 ......................... CCGCTTGAACATAGTGTTTATACTTTCTCTATCGAAGGAAT 13508 25 100.0 42 ......................... TATGTTGGAATTATGTACAAAGGTATGAAGGGCTTGTTAAAG 13441 25 100.0 40 ......................... GTTAGGTATAAATAACTCCCGCTAGGAAACATTCCTGGCG 13376 25 100.0 40 ......................... CGTATGCCTTCGTTCCTCCTACTACGAGACCCTGAAATGC 13311 25 100.0 40 ......................... ATTTTTAATAGGTTTCTATATATTTCGACAATTATTGTTG 13246 25 100.0 40 ......................... TCATTTTCTTTTTCTAGTTGATTTAATAATGATCTTATTT 13181 25 100.0 41 ......................... AAATATAACAATCTTGCAATCTTTATATGGTTTTAGATTTT 13115 25 100.0 36 ......................... TAGTATGAATGAAATCCTTAAATTCTTACAAGAAGG 13054 25 100.0 40 ......................... TCTATGGTCTAGTCCACTATATCCCCATGTTGTGTACTTT 12989 25 100.0 40 ......................... AGCTACACCACCTATACCATTCTTCTTTGCATGACTTCTA 12924 25 100.0 41 ......................... TAATACCAAATTCCCACAAATATAACTATTAAAAAAATGAT 12858 25 100.0 39 ......................... ACTAATAGTCATATTGCCGACACTAACTGTTTTGAACTC 12794 25 100.0 41 ......................... TAATGCCTACTGGCTCCGTTTCATCGAGCCCAAGTATGGCG 12728 25 100.0 37 ......................... TAGTTATTGGTTTGAAGGTAATCCTGAAGTCTTCAAG 12666 25 100.0 39 ......................... AATCGAAAACAAAGCGGGGCACAGAAAAAAACACAAAGC 12602 25 100.0 41 ......................... TAATACCAAATTCCCACAAATATAACTATTAAAAAAATGAT 12536 25 100.0 39 ......................... ACTAATAGTCATATTGCCGACACTAACTGTTTTGAACTC 12472 25 100.0 41 ......................... TAATGCCTACTGGCTCCGTTTCATCGAGCCCAAGTATGGCG 12406 25 100.0 37 ......................... TAGTTATTGGTTTGAAGGTAATCCTGAAGTCTTCAAG 12344 25 100.0 39 ......................... AATCGAAAACAAAGCGGGGCACAGAAAAAAACACAAAGC 12280 25 100.0 39 ......................... TTTGAAATAAATAAAATGAAAATTACAAAAACAAGAAAA 12216 25 100.0 41 ......................... ACTATCAATCCAACAACTGGTAGTTCAACTAGTCAGGGATC 12150 25 100.0 39 ......................... AACTTTATATTCTAAGGAAGCTACTTGGATCATGGTTAC 12086 25 100.0 40 ......................... GTATATAGAATATGAATTCTATGTTCTATTGTTTGTTTTG 12021 25 100.0 40 ......................... AGAACAGCTTAAATCCTTATCCTTAGATTTACAAGTTTAT 11956 25 100.0 39 ......................... AGATTTTCTACAGTTAATTGAATTTCTGAATATGTTCTT 11892 25 100.0 40 ......................... TTTTCTATAGAATTCTCAGACATCTATATCCCTTCCATGT 11827 25 100.0 38 ......................... TGGTGAAGGTATAGTATATAAGGAAGAGTTAAAAGAAG 11764 25 100.0 43 ......................... AATGGCAGAAATTATTGTTTTTTTCTTAGTTGTCTCTTATGGT 11696 25 100.0 38 ......................... ACATATCATAGTATGGAAGGATAGAAATCATAAAGTGA 11633 25 100.0 39 ......................... GACTATATTTTCAAAGACTATATTGAAAAATTGTACCCA 11569 25 100.0 36 ......................... ATTCTAAAGGCAATTGCTCTTTTTTTCGGGGATAAT 11508 25 96.0 45 ..............A.......... TGATACAAATTTACTGGTAACGATGCGATGATAGCGTCGTACTGA 11438 25 100.0 41 ......................... TTTATATATCTTATGGAGATTGCTATTCTCTTTCTTCTATT 11372 25 100.0 40 ......................... GAGCATTAATTACTGCGATGACATAGTCTGGCAGATTAAG 11307 25 96.0 36 ..........T.............. TCAAATGCGCTTATTGTGTGTAGCCATCCAAAATTT 11246 25 100.0 39 ......................... TATTTAGCATTATGAATCAAAACAACAACTTGATATTTT 11182 25 100.0 42 ......................... AAAGCTATTATCTCGTCATTAATCTTATTAAATTTGTCAAAG 11115 25 88.0 41 .........TG..G........... TAACATTATCATTACTTATCATTTGCTTTTTCATGAAAAAG 11049 25 88.0 42 .........TG..G........... TATTTTAGGTAGTCTGATGGTAATTTCTTAGTTATTAGTATT 10982 25 88.0 40 .........TG..G........... AAAGATAGATAATCAGAGTCGGAAAACAGAGTCAAATCCA 10917 25 88.0 39 .........TG..G........... GTCTTTTCTATTGATTCTTCACCATTTAGAACTTGTGAT 10853 25 88.0 41 .........TG..G........... AGATAATCGATAAGCTTCCACACAAACGGTTGATTCACTCT 10787 25 88.0 41 .........TG..G........... TTTACTGAATTAACGAGATCATCTAGATCTTGATCCGACAT 10721 25 88.0 40 .........TT..G........... CTTCATCAAATGCTACGATGCTAAAAAGCGTACGCTAAAG 10656 24 84.0 38 .........TT.G-........... AATTGTTGACTCCCAGAAAATTGAATTTGTGTATCCCA 10594 25 88.0 40 .........TT..G........... CTGTAGTAGATATCATTCAACGGACTGCAGTACGCTATAA 10529 25 88.0 41 .........TT..G........... ATATACATCTTAAACTTAGGAATGTAAAAATCATATTTCTT 10463 25 88.0 41 .........TG..G........... AATGTTCTAACATAGACTTTTTAATGCAAATACAAAATGAT 10397 25 88.0 40 .........TG..G........... CAATTATTTACTGGATCATTCTGCCACCTTAGTTCTTCTT 10332 25 88.0 39 .........TG..G........... AAGTAGTATAAGATAGCACATTAATTTGATATTTTCCCG 10268 25 88.0 39 .........TG..G........... CTAACCCAATATGATTTACCTTCTAAAATTTCATAATAA 10204 25 88.0 44 .........TT..G........... TGCGTGGACATACGGGCTAGAGGCAATTAGCCCTAACTCCCATT 10135 25 88.0 39 .........TT..G........... CTTGGGTGTCCTCGGGTTGGTTTTATCAACGGGCTAAGT 10071 25 88.0 41 .........TT..G........... CTATACATCTTATACGCGATGACTGCAGGGACTATGATGAG 10005 25 84.0 41 .........TT..G..........A CAATATATCTTGTATGCTATTACGGCTGGGACAATAATTAG 9939 25 80.0 40 ...C....A.G...A.....A.... TATACTTCCGAAATTCATTCATCTAGTGATTCTGTTCTTT 9874 24 76.0 37 ..A......TG..AA-......... ACATAACGATTCAAATCTTGAAGATCGTAATAAAAAA 9813 25 76.0 231 ..A....T..G..G..G....T... TTCAATAGCTCGTTTATTCACTTATGTCTGGAGCAAATTGATTTCCAGATTGTAGTTTGTGGAATATCTGGAAATTGAGGCTATTCTCTCTATTAGGATCATTCATAGAATTATCGTCTAGTTTTCAAATGAGACATACTACTAGTATCTCCTCAATTTTCATGTGATCCACAAACTAGCGTGATTCTTACTTTTATAATGTGGATTTAATAATACGGGCTTATCCCTTCC 9557 25 72.0 0 TT.....TA.G...TA......... | ========== ====== ====== ====== ========================= ======================================================================================================================================================================================================================================= ================== 84 25 96.1 42 GATTAATCCACTATGGAATTGAAAG # Left flank : TTCTAAGTAGAACAACTCACATACTAGAGTAAAATATTCAAATAATATATCTAATATTAGATTTAAAGCTAGATAAAAAGTGTTTAAGTTTACGTCGTAGTTTTTTCCACGTCGAAACGCCTATTTATAAGAGAGAATAAAAACACAGAAAAACCTAAAAATAAACAAAAAACAGAAGAGAAGAACTTGAATAATAAAGTTTTTGAGGTATTCTGACGAATTTAGGAAAAAGAAGTTAAACTTCAGGAAGGGTTACTTTCGAATTTGATTTAGAGATTAAAAATGTGAAAGTTCGAGTCTCAATGCGACCAAAACGAAATCATCAGAGAAAACTTACATTTAAAAACCAATTTTTACTTTCAATTTGTGAAAAAGACCATGCGACCAAAAAACGCAAAAGTAAATACTAGAGAAGTCGGTCGCAACTAAAACTAAGGAAAACACGTAAACTTATAAACAAAGAAAGAAAAAACTAAGATAGGTGATATATAAAACCAACA # Right flank : GCTATATAAAGAAATCTTAAAAACATGAGGGGATTGGCTCAAGTTGTAATGAACGGATTTAAATTTCATGGATCATGTTTTCTTTAAAGTTAAGTTAGTTTTTATGTTTGTTTCAAACATGTAAATGGATAATCTTTATAAAAATGTTCTTTACTAATAATATTGTGTCTCAGAATAAATCTTTATTGGACGAAGCAACAGAAATTGGTATTTCTGCTACTACGTTCGGAAAAGTGAGCAGTAGTACTGTAAATAATTTGTTAAATTTTTTTACAATCTAGAAAGAATGTAAATGAGCTTTTGTTGTACATTATGAGGCAAATGCGTAGGGGTGAAATAGATCAAAACACTGGTAAACTTCTTTTATCTAAGTTGAAAGGGAAGAAGCTAGAGGAGGCGTTGGAGCTGTTAGGTTATTTTAAGTGGTTGTACGAGGCTTTAGATACTGAGGAGGCAAGAAATAAGAAGGCTGAGATTTCTAAGGTAAAGGATTTTAAAGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCACTATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [37-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 24285-19954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020477.1 Acidianus manzaensis strain YN-25 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 24284 25 100.0 36 ......................... CTGTATTCCTGCGATCCTGTTAACGACTCATCAACG 24223 25 100.0 39 ......................... TTTTAATGAAACGGGTTTTACGCCCGCATAGGGTTAAGG 24159 25 100.0 37 ......................... ATTTTTATCGTATTACACGCAAAAAATGAAACAAATT 24097 25 100.0 39 ......................... TTCGCTTCAAAGTATTTATAAGCGTAGTATTCGTCTTCC 24033 25 100.0 40 ......................... ACGTAATATTGGAAACTGGGGAGTTTTTTCGCTTCATTTA 23968 25 100.0 41 ......................... ACGGTATTCCTCTGCAGTGGTATTCGGCGTGTAACACAATT 23902 25 100.0 40 ......................... AGAATCAGCAAACTTAAGTATCGCTCTTACAGAATTTGCA 23837 25 100.0 40 ......................... ATAGATCAGGTGCTTGAAGATAATGAACAGTTGAAAGCAG 23772 25 100.0 39 ......................... TAGTCAGACAGGATAGATACGAAATCGATGAAGAGAACA 23708 25 100.0 40 ......................... AATTTCTTAATCATACAATACAAAACTACAATCTTACAAA 23643 25 100.0 39 ......................... ATGTATTCCTTTAATTGTAGAGATGATGTTTGAATATCT 23579 25 100.0 41 ......................... TATTTAAAAAATATATTTGGCTTTCATCAAATCATGATCAT 23513 25 100.0 36 ......................... TAAACCATTCTCCCTTACCTATTTCGAAGCTTCTCT 23452 25 100.0 40 ......................... GTTCATTTTGAGTTTCAACTATCACTTTAGCTAATCTGTC 23387 25 100.0 40 ......................... CCTCTTTTGAATTAATAAAACTTATGAACTGTTTAGCTGA 23322 25 100.0 39 ......................... TATTCCTCTGTAATTTGTTGCGATAAAATAATCTAAAAC 23258 25 100.0 39 ......................... TACATGACTTAGGTGTTGAATTTTATATGAATAAAGGAT 23194 25 100.0 39 ......................... TAAATCGCAAAATATTCCCATTAAGAATGCTATCGTAAT 23130 25 100.0 39 ......................... TTGATAAACATCATTTGGCACTAATATCATCTTTGTCAT 23066 25 100.0 42 ......................... AACGTTAACAGTTTCGGTCTACTTAACGCGAAACCGAAAGTA 22999 25 100.0 41 ......................... ATATAAAACACAAAAAATTATAACTTCCGCATTAAAAACTT 22933 25 100.0 41 ......................... ACAAGATCTCCTGGCAAATGACGTTTTTAGCAAAGCAAGCC 22867 25 100.0 39 ......................... TTGATGATGAAGAATTAGCGAACGATACCGTCCACTGAT 22803 25 100.0 41 ......................... GCAAACCATTTAAATCCATACTGAGATAACCAATTTTCGAA 22737 25 100.0 37 ......................... TAAGAAAGACATCCTTAGATCAAGAATAAAAAGATAG 22675 25 100.0 42 ......................... TTAAACTATAAGGTCTGTGTTTATCATCTGTTTCCCAAATTT 22608 25 100.0 38 ......................... TCTTTTTTTCTCATTTTTATGAATAATTTTCAGTTTTC 22545 25 100.0 40 ......................... ATATTAATTCCCCCTTTCATGACCATGTGCAAGATAATGT 22480 25 100.0 40 ......................... ATTAACTTCAATGTAAGGAACACCATTTGATGGGAACTTT 22415 25 100.0 41 ......................... AAATAATAAATTGATATTAGGTCAGCATTATCACGATATAT 22349 25 100.0 39 ......................... TTAATCAACCTCTATTTTCATTCCTAATATTCCCTTTCT 22285 25 100.0 39 ......................... CAAATCAATAATTATCTGTGGGAAGGTGAGGCTTTATAA 22221 25 100.0 38 ......................... ACCATTTTCAGTACTTATTTACAGTTCTCAAAATGCTA 22158 25 100.0 37 ......................... ATTACTCTCCTACATTCATCAAATCTAGATGCTCCAG 22096 25 100.0 38 ......................... TTTAAATCTCTGAATTGATTAAATGTAAGAAACACGAT 22033 25 100.0 40 ......................... TTTGATAAAGTGCCGATCTTTATAATATCTCCCTGCAAAC 21968 25 100.0 38 ......................... AAAATAACAAATAAAGAACGAAAATACAAAACAAAAAA 21905 25 100.0 40 ......................... TCTTTCATCTGTTCTAACATTTTAAGTTCATATTTGTTCA 21840 25 100.0 40 ......................... TTAACACTGTTAATTTGATCAAATACTTCTTTATAATCAT 21775 25 100.0 37 ......................... GTAATTGTACCTGGTGGTTGAACTTGAATTGTTTCTG 21713 25 100.0 39 ......................... ATTATACAATAAATTATAAACCAGGTATTTCAGGGTTCT 21649 25 100.0 41 ......................... TAAGGGGTAAGTAAAAGGGTGTACTATGGGGTACACCGCCT 21583 25 100.0 41 ......................... ATCATTTGAGTAAATTCCATCAAAGTCCAATTGTTCTCACA 21517 25 100.0 39 ......................... TGTTTTTCTATTTCTTCTTGGGCTATTTCTCTAATTCTT 21453 25 100.0 41 ......................... TCTTCGAACCCTTCCCATGCCACTAAAATGTACGCTAAAAT 21387 25 100.0 40 ......................... TAACGTACTCGTAATGACGTTGTATAAATCTTATTTCATT 21322 25 100.0 41 ......................... TTCCTTTCTTCTTGTATCCTACGCCATGGAATTTTTGCTCT 21256 25 100.0 37 ......................... TGTATAAAATCTAGTAATTCATCATCAGTATCTGCAA 21194 25 100.0 43 ......................... AACTGGTTACGTTTGCCCTGTCTGTGGATATCAAACTGATACT 21126 25 100.0 39 ......................... AAGATTAAGCCTTTACTCAGGTAAACGGCACCCTTCATA 21062 25 100.0 38 ......................... TTCAGTTTGAAAATTGGATATTAATTCGTGTAGTTTGC 20999 25 100.0 39 ......................... AAAATAGTACCGTTAATATCGACTGTTGCATATCCGTTA 20935 25 100.0 43 ......................... CAGAAATTGATGATTAAAATTCTCTTCTTAGCAAAATAATCAA 20867 25 100.0 39 ......................... ATTTAAATCACTTGAAGAAGGCAGACAGAGGGAAGGACT 20803 25 100.0 36 ......................... AGCTCAGCTCTACTGGGAAATGTGTACCATCAAAGT 20742 25 100.0 39 ......................... TATTTTTAGCAAAAATCTATATCTAATTTTTATTGCTAT 20678 25 100.0 41 ......................... ATTTTATACTGTTCGAGAAACGACTTTAACGCATTTTCTAA 20612 25 100.0 41 ......................... ATTCCATTTATCCTATGTCCCATAAAATTATACTATATTAT 20546 25 100.0 39 ......................... TTACTCCAGGGCAAAGCGACTCATACTTTTGAATAATCT 20482 25 100.0 39 ......................... TGGGATCCACAGGCGAGATTTCATCAATAAAAATATAAC 20418 25 92.0 40 .........T...G........... GATAAAACTGAATTTACAATATAGCCAAATGTATCAACCT 20353 25 92.0 39 .........T...G........... GTATGCCCACCCCTGTCAGAGTACAGTCACACCCAACCT 20289 25 92.0 37 .........T...G........... TCATGATAATATCTGATATGTGTCTCAAATTGATTAT 20227 25 92.0 35 .........T...G........... CAAGTAGTCCGCGGGATTCTTTGTTTCATAGGGAT 20167 25 92.0 37 .........T...G........... ATTCTTCTTATAGCATTGGCTACAAATTCTTGCCTAC 20105 24 88.0 39 ............G-.C......... AAGTAGACTATACAGGTTCAGATGACTTGAGTTTCTTTA G [20089] 20041 25 80.0 37 .........T...GA........TT TTTTGAAACAAAAATCCCTTTACTTCACTACTTTCTT 19979 25 80.0 0 ........TTA....A........T | G [19957] ========== ====== ====== ====== ========================= =========================================== ================== 68 25 98.6 39 GATTAATCCATTATGGAATTGAAAG # Left flank : CTAATACTTATTCTAATAATAGTTCTATTTGAAAAAAATTTTATTTTTTTAAAGAAATAAGCAAAAACTGAAATAAAAAGCGTTTAAATTTACGAAGTAGCTTTTTCTACGAGGAAACGCCTATTTATAAGAGAGATTAAAAACACAGAAAAACCTAAAAATAAACAAAAAACAGAAAAGACCAAAGCCTATAATATAGTTTTTAAGATATCCTAGCGAATTTATGAAGAAAGAATACGATTTTAGGAAAGGTGATTTTCGAATTTCATTTAGAGATTAAAAGTGTGAAAGTTCGAGTCTCAATGCGACCGAAACGAAATCATCAGAGAAAACTTACATTTAAAAACCAAAATCTACTTTCAATTCACGAAAAAGACCATGCAACCAAAAAACGTAAAAGTAAATACTAGAGAAGTCGGTCGCAACTAAAACTAAGGAAAACACGTAAACTTATAAACAAAGAAAGAAAAAACTAAGATAGGTGATATATAAAACCAACA # Right flank : TCTTAGCTAGGTTTAAAGAGATTAATGGAGCTCTAGGTTGCTAAGAAATTGAAGTCTATAAGTCTATTATTTTAGATAATTTTACTATTACTATTCGGATATTTTACGCTAGCCGTATATGTCTTGATAGAGCGTTAATTTTTAGTTGTTAAATGATAGTCTGTGGAGCTTTAAGTAATCAAATGCTAATTTACATGGTAACTTTATGTAACCTTGTATGGAATATCTGAAAATGAATCCCTCTGATCAGCAATACCAAAATTAGTTAAATACTGTATACTAAGCGTACTTAACTGATTCAGAGTGGTTTAAAACTATACTCAATAGCTCCACAAACTGGGGCACAAACGCTAAAAAGATTCAGAGTGGTTTAAAACTATACCACTTTAGGTTAAATACTGCATACTACGCGTTTAATTCGTTACTTTTTGAGCATCGGACAGTAGATTCTGCCAGAAATAATAGAAGCTAAGTTACCGCGAGGAAGAGTTGAAGCTATA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCATTATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 38482-32575 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020477.1 Acidianus manzaensis strain YN-25 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 38481 25 100.0 39 ......................... ACAGAATCTGGGAACGGAGATGTTGCAATACAACAAGCA 38417 25 100.0 39 ......................... TACCATCTTCCAGATGTCCTACCAATATATCATGACGCT 38353 25 100.0 38 ......................... AACGTAATATGTGCCTCTAATAATTTTTCTAATTCCTC 38290 25 100.0 39 ......................... GAAGATGAGTTTTGGGATTTAGTAGACTGCTTAAAGCAA 38226 25 100.0 41 ......................... ACAAAATTCTTAATCTTTTGAGCTATTTCTTTTGCAGTTAT 38160 25 100.0 41 ......................... TTAACAATTTCTTTCAAGATAGTGATTTTTTCAGGTCCCTC 38094 25 100.0 39 ......................... GTAAATCAGGAAGAGAATGCCTCCGGAGATTTTGATGTC 38030 25 100.0 40 ......................... TACATATCATGGATGGAAATAATATGTCCACACTTCAAAT 37965 25 100.0 46 ......................... TATATATATATATTGGTGGAAAAAATGATAGGTCCAATCATAATTG 37894 25 100.0 39 ......................... TCATTTGTCCTTTCAATAATAGTGAAGATATTTCATGGT 37830 25 100.0 41 ......................... TACTGGTTGGATTGACGGATCTGCTACGATAAGAAATACCT 37764 25 100.0 39 ......................... TGTCTCTACTTCACAAGCTAACCAGCCGAATATATTAGA 37700 25 100.0 43 ......................... CGATATTGTACGTACCCCTATTCTTTGCCACAACTAACACCGT 37632 25 100.0 39 ......................... TCTTCTCTATTTCTCTTTCAGCTTTGTTTCCTCTTTCTT 37568 25 100.0 39 ......................... GCTTGGCTGTTATTAACTTGAAAAGCTCTTTGTTTATTT 37504 25 100.0 40 ......................... TTAGAAGGTTTACAACATCTAGCATTATGCTTATTGCTTT 37439 25 100.0 39 ......................... CATCATGAACTAATTTTTGCATTACGACAATTGGTTATA 37375 25 100.0 38 ......................... ATACAACAATTTTCAATACAACAAATAAAAGATGCAGT 37312 25 100.0 40 ......................... GCCCTCTACCAGTACTTCGGTACTGGCACGGTGGAGTTAT 37247 25 100.0 39 ......................... CTTTCTATCTCTTCTATCATTCCTTCCAATTCTTCTTGT 37183 25 100.0 34 ......................... TTTATTTGTTGTATCGAAAATAATTGTTGTATAG 37124 25 100.0 46 ......................... TATGAATATATCTTCTCATTCTGTAACTTAATTGAATATCCATCAT 37053 25 100.0 41 ......................... ATAAAATTAGAGAAATAAAATTTTAATCATAACTACAATTT 36987 25 100.0 40 ......................... CTATGTCCTTAGTGTGCTTGGTCATATAATCACTGATAAT 36922 25 100.0 40 ......................... AAATCAATAGTGATACTTCTCCTGAGGTTCTCCTCAGCAT 36857 25 100.0 40 ......................... GAAGTAATACCACATATCACATTTGTCTGTCATTTATTTC 36792 25 100.0 39 ......................... TTCTCTTCCTTGATGGGATGAAAAAAATGTTTAAAACTA 36728 25 100.0 39 ......................... ACACACGGGAGGCCGTACCTCATCAAATGGTCCTGGTTT 36664 25 100.0 41 ......................... AACTAACGTTACCAAATTCACTTCCGTCAATCAGCAAGTAG 36598 25 100.0 41 ......................... CCAATTGATTCCGCCATTCGACGAATTTACATCATGGCAAT 36532 25 100.0 40 ......................... TCGTAAGTTTTCCATATCCATGGACCTAACGAGATGTTAG 36467 25 100.0 40 ......................... TCAAATCTTACAATTTCGCAATTTTGTGTCGTCACAACGA 36402 25 100.0 39 ......................... TGTACTTAAAGACAACGAAAGACTGAAAACCATAATCTT 36338 25 100.0 39 ......................... ACCTCCAGGCTAACTTATACTAGGGGGTATTTAAGTTTT 36274 25 100.0 39 ......................... TTATTATCTTCAACCTCTGCGATACCTCATGCGATAGCT 36210 25 100.0 41 ......................... TCCACAGTGTACCTATCGTTTCTAATAATCACAATTAATTT 36144 25 100.0 36 ......................... AATATTTTTCCACGTCGTTATTAATGCTGATACCAT 36083 25 100.0 40 ......................... GAAATTCACTAACCCCAAGTTTACTATAAACTCTTGTAAT 36018 25 100.0 38 ......................... GGCTCTACTTCAGAGTAAGTAGCTTTCTGCTTTGGAAT 35955 25 100.0 39 ......................... TCACTGATTGCGTTGGCATACAGGCAGGAATTCGGACTG 35891 25 100.0 40 ......................... GACAATTTACGGTCTGAAGATTCACGTAAAACAATCCCAC 35826 25 100.0 40 ......................... TATGGGTCAGGTAAGTAAGGTAATTGTTGCCCGATTTCTT 35761 25 100.0 37 ......................... ATAACTACGAAGTATTTACTCCAGCAATCTTGGACAG 35699 25 100.0 40 ......................... ATCTCTCAGCCAATCCTTACGAGTAGCGTAGTCGAATCGT 35634 25 100.0 40 ......................... TATTGATTTAAAACCTAACTGATTAAGATATTGTAAAGCT 35569 25 100.0 40 ......................... AGGATTATAGCCAAATTTTGAAACAAAATGAACATTTTGT 35504 25 100.0 40 ......................... GTAATAAATTGAGTTACGGTCTGATCATTCTCTTCAACAA 35439 25 100.0 40 ......................... CACTTTTGTTTTAGTTTTTGAATGTTGATACACAAGTTTT 35374 25 100.0 40 ......................... TCGTTTACTATCTCTTTAATTGCGGATTTTATGCTTTGTT 35309 25 100.0 39 ......................... ATTTTTTGCATATTATCATACAAAACTATAAGAACGCCT 35245 25 100.0 39 ......................... AGATCAACTTTCTCAGCCCAATTATGATCAGGGTCTTTC 35181 25 100.0 37 ......................... TATGTGGATAGATTATTTTTACCAAAATTTATACTTT 35119 25 100.0 40 ......................... TATACTTCTCTTTAAGATCGTTAGCTGTCATTTACTTGCC 35054 25 100.0 41 ......................... TTTGTCATTTTACCTACCATAACTAACCCCGAAAAAATTAC 34988 25 100.0 44 ......................... ATACAAAAAACGCTAACTTTGAACGATATCATACAAATAATAAG 34919 25 100.0 40 ......................... TGAAGGGGGAGGAGACCTAACAGCTCCTCCATGCCCTTCA 34854 25 100.0 38 ......................... CTGATCCTCCTTTTTCTTCCCTCTCTTCTTCCTTCTCT 34791 25 96.0 39 ..............A.......... ATACTACGCCGATTACATAGAGCAAAACTCAAACATTTT 34727 25 100.0 41 ......................... GGGAAGATACAGAAAATTTACTAAAAATCTGGCTAGAATTT 34661 25 100.0 39 ......................... ACTAAATCAGAAGAATTCAATAGACTAGTCAGACCGTTT 34597 25 100.0 37 ......................... TTGTATTAATGACATTTTTAGCGTTTACGAATAATAT 34535 25 100.0 38 ......................... GCATAATCTTAGTATTAATTGGGTGGTGGTATGATCAT 34472 25 100.0 41 ......................... CTATATACTCGCCCCACTCTTTATCAGTTGAACATATTTCT 34406 25 100.0 38 ......................... CTCTATGGAATTGAAAGATTCGCTTCGTATATCTCTGT 34343 25 100.0 38 ......................... GCAAAAAATTCGGTCTGATTAGAATAATTCAAATCTTT 34280 25 100.0 41 ......................... TTGAGATAATAATATCTGATATAAGTTTACTGGTAAACTAG 34214 25 100.0 36 ......................... GGATGAAAGGACTGGTATTGTTGCAGCATTAGGTAT 34153 25 100.0 40 ......................... TAAATTATCTATTATCATTTTTCTAGACCATGGTGATACT 34088 25 100.0 38 ......................... CCTAACTATACTGTAAGATTCGAAGAAGACTACAAATG 34025 25 100.0 37 ......................... TCTTTTTGCTTAACTTTCTGCAGCTTTCTGCAATAAG 33963 25 100.0 40 ......................... ACCTCTAATAATGTGTACTCAGAAGTGATATTTAAAGTTT 33898 25 100.0 38 ......................... ATTGTATATTAATTGCTTCTTAATGCTTCGGAAAAACT 33835 25 100.0 39 ......................... CTTAATCGCTGTAATGTCTTTTGCCTCTGTGCCTCTACC 33771 25 100.0 39 ......................... ATTTGATTGGTCTTCTTTCTTCTTTTTCGGCATTTAAGT 33707 25 100.0 39 ......................... ATTTCTATCAAACCCAATCGTCCAAAATCCAATTGGTGA 33643 25 100.0 39 ......................... TACACTATCTATCTCTCCACGCCGATAATGATAATTTCC 33579 25 100.0 36 ......................... TTATTTGGGATATAGTTATATCCTTCTTGTTTTCTT 33518 25 100.0 41 ......................... TTTAGATTTGTGTATGATATTACATTGATTTGATATTTACC 33452 25 100.0 39 ......................... AACTAATTGAATATAAACTTGACCAGAAGCATATATTTC 33388 25 100.0 40 ......................... TTTGAAAAAGAGGAACTAGAGCCAGGCTGATTTTGGATTT 33323 25 100.0 40 ......................... CAGTTTATTGAGCCGACTGTCAGATTCCACGTAATGTTAG 33258 25 100.0 43 ......................... TTAGATAGAACGCCAATTCCATTTAATTCTATTTCTTCTTCCT 33190 25 100.0 39 ......................... GTTTCTGGTAAGCCAATGCCAGTATTTACATGCACTAAT 33126 25 100.0 49 ......................... CACGCAATCAGGATCTGGAGGAACATCTTCTGGTTCATCTAATCCGTTT 33052 25 100.0 38 ......................... GGTGTAATAGGTAACTTTCTTTCAAATGCATGGGGCAA 32989 25 96.0 40 ........................T ATTTTTATCTTTCCATCTTCAGTAAATGCTTTTTTACCAT 32924 25 100.0 41 ......................... ACTTCTTTCATGTCAATGAGCTCTCTTACTTCATCAAGATC 32858 25 100.0 39 ......................... ACCATCACCTAACCAAGCATGGTTCGTTGGAGGGCTTGG 32794 25 96.0 41 ..........C.............. ATAAAACTCATTTCATATAATGAGCTATCTATCATAGTTAT 32728 25 96.0 39 A........................ CTGAGTACTTGACGTCTGTAAGAATCTAAGTTATCAAAT 32664 25 96.0 40 ..........C.............. GTGATCAGGTAAAATCTGTTAAACAAGACTTCATATTCTT 32599 25 96.0 0 ..........C.............. | ========== ====== ====== ====== ========================= ================================================= ================== 92 25 99.7 40 GATTAATCCATTATGGAATTGAAAG # Left flank : TAAAATATTTTTGTAACATTTTTAAGAAATTTGTTATTACACTAATTGTCTAGGGCAAGCTTTCATTTAACGATAAAAAGTGTTTAAATTTACGACGTAGTCTTTTCTACGTAGAAACGCCTATTTATAAGAGAGATTAAAAACACAGAAAAACCTAAAAATAAACAAAAAACAGAAAAGATGACGATTAGCAATAAAGTTTTTAAGAGAATCTAACGAATTTATGAAGAAAAAGTACTGTCTTAGAAAAGGTGATTTTCGAATTTCATTTAGAGATTAAAAGCGTAAGAGTTCGAGTCTCAATGCGACCGAAACGAAATCATCAGAGAAAACTTACATTTAAAAACCAATTTTTTCTTTCAATTCATGAAAAAGACCATGCGACCAAAAAACGTCAAAGTAAATACTAGAGAAGTCGGTCGCAACTAAAACTAAGGAAAACACGTAAACTTATAAACAAAGAAAGAAAAAACTAAGATAGGTGATATATAAAACCAACA # Right flank : TTTTCCCTCATCAACCTATGTGTATTTGCATATTTACGTGAAACGTTTTTGTGTATAATAATTTCTTAATGTCTTTAATTTTTAGTATTATATACTAGTTCTATAGCTTATTCCAATGATAAAAGATATGTCAATTTCTAGATGCTCGTGAACTGTTACTTATTGTACGGGACTGTTGGAATACAGTCATGAAAATTAGTGTATAATACGAGAAAAATAAAAGCATAAAGAAATTATATTCACGAAAAGTTAGTTGTAAATATGCCAATACTATCTAGTATTAATTTAGAGTTTACTGCAAGATTCATAGAGGATTAATATAAGCTACAATTTAGTGTATTATTTGTAGATTTTGATGACTGCAATCCAACAGTCCCTATTGTACGATTTCTTTTTATTATTAGGTTTGATTAAATGAGGAAATTGATGAAAAGGTTCTGCCTCTATTTTTCTTTGTGGTATAAGGTTTCGATTTTTGTGTTTTGTTCAGTAATTTTCAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCATTATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 44350-48795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020477.1 Acidianus manzaensis strain YN-25 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================================================================================================================================================================================== ================== 44350 25 100.0 39 ......................... AGTAGTATGTAGTAACTGCCCTCTTTAGTTGTCACTTTT 44414 25 100.0 39 ......................... CTATTTCCTCATACGCCGAAGCATTATTATAAATGTTCT 44478 25 100.0 39 ......................... ATTGTTATTGTATTCACTCTTTCCTGTTCCTTCTTCAAA 44542 25 100.0 38 ......................... TTATCATAAAGACTATAACAATCGTTCTTTCTTAACCA 44605 25 100.0 40 ......................... AGAATAGATTTAATTTGATTATCTGGAATTCCTAATTTCT 44670 25 100.0 39 ......................... TACACCACCAGGGCAGTTGAATGGACAGAAACATTGGAA 44734 25 100.0 36 ......................... TTGTCAGAGCTTCTGACCCGCTCCTTAATTTCAAGG 44795 25 100.0 41 ......................... GATAAACAACGAGGAGACGATTAGGGCATATTATCTTTTCA 44861 25 100.0 41 ......................... TATTACCGCTATTGCTCCAGCATACTGATCTACGAGACCCG 44927 25 100.0 40 ......................... CGAAAAGCGTGAATTTTCCGGGCGGGAAGTATTGTAGGTA 44992 25 100.0 42 ......................... TATACCTCTCTAGTTGTTCGCCATATTGTTGCAGTATTACAT 45059 25 100.0 38 ......................... TCTATCTTCCCTCCAGTAATATTTTCTATATCACTAAC 45122 25 100.0 38 ......................... TTCGTTACGTTCAACATCTGTTGCATCTGTTGAACTAT 45185 25 100.0 42 ......................... ATGCTATCATGTCTCTATATCAAGCGGGATTGATAGCATTAT 45252 25 100.0 39 ......................... TTGGTAACCACTACATGTACAAAATATCGTATACAACCT 45316 25 100.0 38 ......................... TTAATTTCTGCCTTCCTTTCATTTCATTCACCCACAAG 45379 25 100.0 39 ......................... TTATCTTACCCAACATCAAAGAGAGTATTATTGACGAGA 45443 25 100.0 39 ......................... TTACTACAAACCATTAGCCCCGAAGTGGGGGAATGGTAT 45507 25 100.0 36 ......................... TGCAATTGTGGTTTAGGTTGAGAGGATTGAGAGGAG 45568 25 100.0 38 ......................... ATTTGAATAGTTTTCTTAATTTCTAAATTTTCTAAAAG 45631 25 100.0 39 ......................... TGTGATAATGTTAGTAACAGCGTCTAAAACTGAAGGATT 45695 25 100.0 40 ......................... TGAAAAGTTGTGAGAATAGTTGTGAGACATTATACCTTAA 45760 25 100.0 39 ......................... GTAAATTTCCTAAAACTCCACAAGACTTACAATTTTCAC 45824 25 100.0 42 ......................... GCAATTATTGTTACAAAAGATGATCATTATCCGTATTGGTTC 45891 25 100.0 40 ......................... ATAGTTAAATTAAAAATGTTTTTTTTAACTCGCGGGATAG 45956 25 100.0 43 ......................... CAATGCCGAAAAAATTAGCCCATACTCTCCCCCACTCTCTATT 46024 25 100.0 40 ......................... TACTTGAGTAGATCCCGTCTACTCATTGTGAAGGCGAAAA 46089 25 100.0 39 ......................... AACTTGCTTGCTACTACCTACTTATAAAATTTCTTTCAT 46153 25 100.0 38 ......................... ATTAAAAGACGGACGGTTCCGAATACATTTTGAAACGG 46216 25 100.0 38 ......................... AATAATCAATGCCCCATTCCAAACCTTTATGTGGATAT 46279 25 100.0 39 ......................... AGTTTTACATTCAGTTTTTCTTGGTCTTTTGATGAAAAT 46343 25 100.0 40 ......................... TTATTTCTTCTTGTTTAGGTTCTTCTTGTGTCTTAGGTTT 46408 25 100.0 39 ......................... TTTACATGTGATATACATATGTTACTTAGCGATGACGAT 46472 25 100.0 41 ......................... GTGTGAAAGAAGCCAAACTCCCCCATGTAGTCCACAAGATG 46538 25 100.0 38 ......................... TTATAATTGCAGCGATGCTCTCTCCCATTTTGTGACAT 46601 25 100.0 39 ......................... TTTCGGCGACGCCTTCGGAGATATTTACTATTTACTAGG 46665 25 100.0 40 ......................... AAACTTCCAAATGGGGCCAAACCAAACATAAACTCTGCAA 46730 25 100.0 38 ......................... AAATCAATTCCCTTATCCCAAGTTTTTTGCTCTGTCAT 46793 25 100.0 39 ......................... AAAAGTCATCACTTTAGATTACGGAAAAGAAAAAATCTA 46857 25 100.0 39 ......................... AACACTCAAATCGGCCCAAACTCTGCAATTTTTTATTTC 46921 25 100.0 41 ......................... AGTTACAGACGATATTCCAGGCATTATATAATCATTTATAA 46987 25 100.0 40 ......................... ATCTTATCAAGTAAATCTTTAGATATCGGATTAACTTTTT 47052 25 100.0 40 ......................... TCTTCCTCAAGTGCGATTGCAGTTGCGAGATCATTTATTG 47117 25 100.0 39 ......................... CATCTTTAGCTATCTCTTCTGTTAATTTTGATGTATCAG 47181 25 100.0 40 ......................... ATATCATAGATTGCTTCTTTAGTTTCTATACTATGTTTCT 47246 25 100.0 40 ......................... GATAGAAATGAGGCATGGAGTGAGGTTGAGAAATATTACT 47311 25 100.0 38 ......................... TTTGTATCTATATAGCGTAATATCAGTTCTCCTTTCGG 47374 25 100.0 43 ......................... TTTTAAAAAGTGTTATAAAAATATATGAAAACTGTCTTGATCA 47442 25 100.0 31 ......................... TTAATAACTTCAATGAATTTGTTAAAGAAAA Deletion [47498] 47498 25 100.0 40 ......................... TAAAAATCTATTAGATCGGACATAATTTACCATTATGCGA 47563 25 100.0 39 ......................... AATGTTAAAGATAAACAAATGGTAGAAGAAACTACGATT 47627 25 100.0 38 ......................... GTTCCAAATATTTCTTTTCCTGCTAAGATTAGATATTT 47690 25 100.0 41 ......................... TTAGCAAGATTTTTTAATACTAAATCATGTAATTCTATTCT 47756 25 100.0 41 ......................... ATGCAATGTACTTATTTTGTTTGGAATAATCAAATTTTTGT 47822 25 100.0 39 ......................... TTAGTATCATAAAAAACACATTAGCACCAACTTTACCTT 47886 25 100.0 40 ......................... TGATAATTTTTCATTTTGAAGTTTATTATATAATTTTCCA 47951 25 100.0 40 ......................... ATGATTCTCGCCATGGCGGGATAAATGAGAAAAAAGGGTT 48016 25 96.0 39 ..........G.............. GGATCAGTCAACCATACATTTTCTAATTTGCTGTACTGT 48080 25 96.0 40 ..........C.............. ATCAAGAGCTCAATTTTTCCTTTATAGAGATATTGATCAT 48145 25 96.0 45 ..........C.............. TTGTATTTTATTATCTTCTCGTGAATAAATGTTTTTGTGTCTCCT 48215 25 96.0 37 ..........C.............. GTAATGAACTCTTGACGTGAATAATATCCACCTTTAC 48277 25 96.0 37 ...................G..... TAGGCGGTACATTTCAATAAATAAAAGCAATAAGCTT 48339 25 84.0 40 ........T.C........G....T ATTTTTGAGAGTATCTGGTAAAGTTTCATTCTAAAATTGA 48404 25 92.0 44 ..........C........G..... AGACTGAAAATAATCAAGGTTCACAATCAAAAAGTAAGACAAAG 48473 25 92.0 35 ..A.......C.............. AAATAAGTCTCATCATGAGTATGCTTGTTATTCGT 48533 25 76.0 214 T..C....T.A..AA.......... GAAAAATCTTTACTATATGTGGGAAAAATTCTGAGAACAAATTAACAGCTCAGAGATCTTAGTTCCTTTGATTTTCCAACATCAAAGGCTTTACTAGAATAGATTAACTAAGTCAGAAATATTATTTGCAATAAAGTCCACTTCACTTTCTCCATTGAATAGATTAACTAAGTCAGAAATCGAAGAATTAAAAAAGGAAGAAAGAAGGTGGCTA 48772 24 76.0 0 T......-..AA..CT......... | ========== ====== ====== ====== ========================= ====================================================================================================================================================================================================================== ================== 67 25 98.5 42 GATTAATCCATTATGGAATTGAAAG # Left flank : TAAAATATTTTTGTAACATTTTTAAGAAATTTGTTATTACAGTAATTGTAGAGGACAAGCCTTCATTTAATGATAAAAAGCGTTTAAATTTACGTCGTAGCTTTTTCTACGTAAAAACGCCTATTTATAAGAGAGAATAAAAATACAGAAAAACCTAAAAATAAACAAAAAACAGAAGAGATGATCTTGAATAATATAGTTTTTAAGAGGATCTAACGAATTTATGAAGAAAAAGTACTGTCTTAGAAAAGGTGATTTTCGAATTTCATTTAGAGATTAAAAATGTGAAAGTTCGAGTCTCAATGCGACCAAAACGAAATCATGAGAGGAAACTTACATTTAAAAACCAAAATCTACTTTCAATTTGCGAAAAAGACCATGCGACCAAAAAACGCAAAAGTAAATACTAGAGAATTCGGTCGCAACTAAAACTAAGGAAAACACGTAAACTTATAAACAAAGAAAGAGAAAACTAACATAGGTGATATATAAAACCAACA # Right flank : GAAATAGAACAAGGTTACGATAAATATCTTTTCGTCCAATTGATTCATATAAATTACTGAGGGTGCAAGATTACTTTACTCTTAGTTTGTGGATTATCTGGAAATTAAGGCTATTCTCCTTATCAGAATAATCGTATAACCAACGTAAAGATTCAAATAGTACACACACTAATTAACTCTTTCATATTTTAGAATTCAACAAAGAATTTTGAACATTTGCAATTAATCGCTTCACCTTATCTTGTAAGCATCTGTATCAGAGACACCCAGGTTTTCAGACTTTCACAGTCTGTTTTCAATTTACCATATTATGTCTTCGTTTTTCTCTTCGACTTCGTTGCTTATCACTATTCTCTGTTTGAACTGTGTTTCGGTTACTGGAACGATTAGTATGCTGAATCTTCCGTTGCTTTTTTCTTTTCTTTTTATTAGTCTTAACCCTGCTTCTATTTCTTTTACTCTGGAGGAATTTAGGTCTCCTATGAATACGCTGTATTGTA # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCATTATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 53295-59813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020477.1 Acidianus manzaensis strain YN-25 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================================================================================================================== ================== 53295 25 100.0 40 ......................... TTATAATTTCCTTGAACATCGGACTTGCATACTCTCGTTC 53360 25 100.0 37 ......................... CATAAACTTCCGATGCTCCACCAAGACTTTTGATAGT 53422 25 100.0 42 ......................... TTCATAAAAACGCATGGAGGATTGGGTTCTACGTACCTTATT 53489 25 100.0 41 ......................... CAGACTTCGATTGGCATCCAAATCTAGAAAACGGCTTGTAC 53555 25 100.0 41 ......................... TCTTTTTTAGTCTACGTTTATATTTTTCCCTCTTTGTCTTT 53621 25 100.0 41 ......................... ATCAAAATAAGATTGAACCTAGCGGAGAGCTGTGCTACGGT 53687 25 100.0 41 ......................... AGCACAAGTATTTAAATCTTTCTTTCTAGTTTTACACTTTG 53753 25 100.0 41 ......................... GCTAAATTACCGAATACAAACTCTGGAACTATAACTTGATA 53819 25 100.0 39 ......................... CAGAGTATTCTCATTCGTAACTTTTGCATACTTCAAAAT 53883 25 100.0 40 ......................... GCCATTTTCCCACCCCGATTAGTTTTGAGTGAAAGGATTT 53948 25 100.0 37 ......................... GATTCGTAAGATACAATAATTCAACAATTTATTTTTA 54010 25 100.0 42 ......................... TTGTAGTTATCGATACTGTAAAAACCACCTTTTACGGTTGTA 54077 25 100.0 40 ......................... TAGTCTCTTTAATAAAGAGGCTGGAAGAGGGAAAGGTTCT 54142 25 100.0 36 ......................... GACTTCTTCCCAACGGTTATCAACACAGAAAGTTAT 54203 25 100.0 41 ......................... TGTGCCTTAAGCTCGATGGAATTGATCAGTTTACGATATGA 54269 25 100.0 40 ......................... CTGCTTGAGATAAAAGTGTTGACAGTTCCTTCATCTTCAT 54334 25 100.0 39 ......................... TACTTATGTCCTCAGCTTCCTCACTGTTCTCTTCATCTT 54398 25 100.0 41 ......................... TGGACAGACTGCCTTCCCCCGCATCCCAAATATTTTCACAG 54464 25 100.0 42 ......................... AAAGCAGAAAGTAAAGAAGGAGAATCGAAAGAAAATAAATCT 54531 25 100.0 38 ......................... ATTAGGCATTCTCATTTTTCTTAGCCATTTTTCTGCCA 54594 25 100.0 35 ......................... ATTTATTATAACTTCTTGGAGAGATATATTTGGGG 54654 25 100.0 39 ......................... GGTAATATAATTCCAGCTTCAGGTAGTATGTCAATTTCT 54718 25 100.0 41 ......................... AATACTGCAACAACTCAAGCAGCAATCAATTCAATTATTAA 54784 25 100.0 36 ......................... ACAACAGTATTTATATCATCACGGGTTAACCAATTA 54845 25 100.0 39 ......................... TTTTATGTTCTCTAGTTGGAGATCAGGCTCCTCAATCCC 54909 25 100.0 39 ......................... CTTTTTATATGTTCTTTAAAAATCTTCAAATAAGCTTTT 54973 25 100.0 38 ......................... GAATACACCAACGGAAGTACCTGTTAATGTTTTTTGAT 55036 25 100.0 40 ......................... TCCTCCCAAACTTTCTTGTAATAGATATCCTCACACTCAA 55101 25 100.0 39 ......................... TGATAGTGCTACATTATTTAAAATTGCATTATATGCTTC 55165 25 100.0 41 ......................... ATTAGAAACAATTATGAGTCAGTACGGCGTAACAAATACAT 55231 25 100.0 41 ......................... TTAACTTCTACTATAAAAAGAACATACATCTCTCCATGGTT 55297 25 100.0 38 ......................... TTTGACATCACATCATCATCGAAGAAGACTGCTTTGAT 55360 25 100.0 38 ......................... ATTAAATCAATTAAATCATCAGAATAAACTAAGTTCTT 55423 25 100.0 42 ......................... TCATAAAGAGGAGCACTAACGCGAGCAGTAACAATCATCTTT 55490 25 100.0 44 ......................... CCAACTTTATTGGGATACAGTTAGAGCAGGTCTAAGAAAACCTG 55559 25 100.0 40 ......................... TTAACTTCAATTTCGTGAACGACTTGACAGCTTTTTATAT 55624 25 100.0 41 ......................... AGTAGCTTCGGCAGTAGACAGAGACTTTAAAGCTATATTAT 55690 25 100.0 40 ......................... TTTTCTAAGTTAGAACATATAATTATGTACTCTCCCCAGT 55755 25 100.0 38 ......................... GTTTTACTTGCCATGTCTTATCATCCTTTAAAAATGAA 55818 25 100.0 38 ......................... TAGTAAACCATTTTTGTAGTGGATAAGATAATTTTCTG 55881 25 100.0 39 ......................... TATTCAGTTTGATTGTACTGTGGCGAATGGTGAGGAATA 55945 25 100.0 40 ......................... TACAGTATATCAGCTATCAATGAACTATCTGCTTGATCAT 56010 25 100.0 40 ......................... ATGAATATATTAAAAACAAACAAAGTAAAATTGTTTATCT 56075 25 100.0 36 ......................... AATTACATTGACTGCGATTTGTTAGAATCTAGAAGA 56136 25 100.0 40 ......................... TAACGAAAAAATGTTATTACTTGGCAAAAACGGGAATTTC 56201 25 100.0 40 ......................... CCCTTTCTGTTTTCTTCATTTCTTTTCACCAACTCTTGAT 56266 25 100.0 38 ......................... ATAAAGACATTTATGAGTTTTATGCTAATCGAATTAAA 56329 25 100.0 42 ......................... TGAGATAAAATTCATACTTTTTGAGAGAAGTGTCCAATTCAT 56396 25 100.0 36 ......................... CTAAACTACTTATAATCTTAGGTAAACTCTTAGTGG 56457 25 100.0 41 ......................... GCAATACCCTGGCGATAGACTAATTTACGAATTGCAAGAAG 56523 25 100.0 40 ......................... TTTTCTGCCTTTTTATTTGTCTCAAATTCAACCATTTTCC 56588 25 100.0 40 ......................... TTAGTAATGTTTACACTTTGTATACCACTTAAAGTAACTT 56653 25 100.0 40 ......................... ATTCCATATTTTGATTCATTACATATATCAGCATCCTTGC 56718 25 100.0 39 ......................... ATCTTGTTCAACTGTATTCCATTAATATTTTCGAGAAAA 56782 25 96.0 40 ........T................ TTTCTGTTTCATATAGGAATTCTTCTATCTGACCTTTTAA 56847 25 100.0 40 ......................... ATAGAATACCCACATTTTTTTAAAACATTTTCTAGACTTT 56912 25 100.0 39 ......................... ATATATTTTCGACTTGATTAATCAGAATATTTAAATGTA 56976 25 100.0 42 ......................... CGGAGGATGTAAGAAACGTCCTATGCCACCTATAAGAGATGA 57043 25 100.0 39 ......................... TATACCAGTCAATAGTACTTTAACATTAAGTAATTTCAA 57107 25 100.0 39 ......................... ACAATCAACTTCAATTTTGGATTCTCATCATGATATTTG 57171 25 100.0 40 ......................... ACCTTTTAGATTTTCTCAAAGCTAAGTACAAATTAATGAC 57236 25 100.0 43 ......................... TAGATAACATACTTAAAAATAGATATTTTTATGACCCGAAAAT 57304 25 100.0 38 ......................... TGTTGTCTTTGCCATTGTTTGAACTTAGTTTCACCCTT 57367 25 100.0 39 ......................... TGTTCTCCGCTACTTGTATTTGCAATATATTGATTTGGT 57431 25 100.0 43 ......................... GATTTATTCTTCTCTTTTTTGTGCTGACCAAACTTACCATAGC 57499 25 100.0 38 ......................... TTTTCACTCATTTAACTCATCCTCCTCAATCTTTCCTT 57562 25 100.0 142 ......................... TTGAAATAAATGGAATGTTAGGTAGTGTGTGTATCATTTGAAAACTTAACGCTTATTTTATGAACAGTTCTGATTAAGAGAAGAACCTCAATTTTCAGATAATCCACAAACTAAATGTTAGGTATAAGAAATGTCAGCACTC 57729 25 100.0 41 ......................... TCTTTATCAACTCTCATCTTATTGTCAGTCAGTCAGAGAAA 57795 25 100.0 40 ......................... CTTACTACTAGTATAGGTTTTTCTTCTTTCTTATTTATTT 57860 25 100.0 39 ......................... ATATAATTTATGTCTATAGTATCACTGCCGTTCCCCCAA 57924 25 100.0 37 ......................... TTTTTTTGTGTTTTCATTTTCTTTTCACCCCCTATTT 57986 25 100.0 42 ......................... AGTCCATTCAGTTCGAAGGATCCGCCACGGCTAGACAAATAG 58053 25 100.0 38 ......................... TTGCTAGTAATAATGTACTATACATATTTATAGGTAAA 58116 25 100.0 41 ......................... GAAACCCGTGCGTGATCATTTGGGTTGGGGGCTATCAACCC 58182 25 100.0 43 ......................... CTTGAAGCTACATCAGGAAACCATCCATTAGCCCAAAATCCTG 58250 25 100.0 38 ......................... AAGAGATCCTAAAGTCTTTTATAAAACAAAGTTAGTTT 58313 25 100.0 40 ......................... TTGGTCAATGTTAATTCATATTGTTAAGGTAATAAGCAGA 58378 25 100.0 40 ......................... TATAGGACTATTCTCACCAGCTTTGCTTATTATTAATAAT 58443 25 100.0 39 ......................... ATTTGAACGCCATCTAATATTTCCGTTCTATAAGTATCA 58507 25 100.0 35 ......................... CTTCAACGTCCTGATTAAAATACGTGTTAATGAAA 58567 25 100.0 37 ......................... TCACCCTCTTTTGCTTTTATTTCTACTCTGTTCATCT 58629 25 100.0 40 ......................... TTTTGCTATATTTAGATTCTGATTTTAGTATCTCTAAAGC 58694 25 100.0 38 ......................... TCTATTTTTAATAATCCTTCATATATCATATTGTCACC 58757 25 100.0 39 ......................... TTAATTATGATTGAAATATATTTAAAAGCTTTAGTTCAA 58821 25 100.0 41 ......................... GACAGAACGTAACTTCCTAACGGGGAACAAATTAAGAGCTT 58887 25 100.0 41 ......................... CACTTAGATGGCGTTAGTTGGAAATAGATGGTGAGAGAAAT 58953 25 100.0 39 ......................... TACAATAATACTGATTAAAAATATACTCAAAATCAAAAA 59017 25 100.0 39 ......................... TACAAAATGAAAATATGAATTTGATAAGTATTCCAATTT 59081 25 100.0 39 ......................... CAGGCTTACCACCTTATAAAATAAGCTCTCATTTAGTGA 59145 25 100.0 38 ......................... CCATATCATCATTGAACTTCACTCTTCTACCGTAATAG 59208 25 100.0 40 ......................... TTATAGTTCACATTAGCCCTAAGTGTATACGCAAAAACAA 59273 25 100.0 40 ......................... TTTTGTTATCCACTTTAATGCAACTGACAGTAAAAGAATT 59338 25 92.0 41 ........T.A.............. CTACATTATATTTTTCCAGTAATTTATAAATTGTAATACCC 59404 25 100.0 39 ......................... ATTTTATGAAAATGATATTTGTCTAACAATAATTGTTGT 59468 25 100.0 39 ......................... CCTTCAAGAGTCTCATAATTCTTAAATAAGATCAATCTT 59532 25 100.0 40 ......................... TAAGATATGCAAAGGAATATCATGAAATAGAGTATTCTAT 59597 25 100.0 40 ......................... TATATAATTCGTTTATTGATAAAGCAATTAAATATATGGA 59662 25 100.0 39 ......................... TTTGAATGCAATTTGTAAAAAAATTGAATTATCTTTAAT 59726 25 100.0 38 ......................... CCATCTACCATTTGCCAAATGCTAGCTTGCTTGTAACT 59789 25 72.0 0 ........TCAC.ACA......... | ========== ====== ====== ====== ========================= ============================================================================================================================================== ================== 100 25 99.6 41 GATTAATCCTGTAGGGAATTGAAAG # Left flank : TTTCTTCTTTTTTATTTCTAAGAGATTATAAAGATATAAAATTAATATATAGTTAGATTACAAAAATAAGAAATAAAAAGTGTTCAAATTTACGACGTAGTTTTTTCTACGTGAAAACTCCTATTTATAAGAGAGATTAAAAACACAGAAAAACCTAAAAATAAACAAAAAACAGAAGAGTAGATCATCAGAAATAAAGTTTTTAAGAAAATCTAACGAATTTATGAAGAGAGAATACGATTTCAGGAAAGGATATTTTCGAATTTCATTTAGAGATTAAAAGCGTAAGAGTTCGAGTCTCAATACGACCGAAACGAAATCATCAGAGAAAACTTACATTTAAAAACTAAATTTTTCTTTCAATTTGCGAAAAAGACCATGCGACCAAAAAACGTCAAAGTAAATACTAGAGAAGTTGGTCGCAACTAAAACTAAGGAAAACACGTAAACTTATAAACAAAGAAAGAAAAAACTAAGATAGGTGATATATAAAACCAACA # Right flank : GGAAAATAAGGTCTTTCTCAGTCAGATCAAATAATTTACGCTGACAGAAAATTGACGGAATTCGATGAATTCAAATCCTTCACTACTAGTGTATAGGATTTCAATAACGCTAATTAACGACTAGTTTGTGGAGTATTCAAATTAACACTATTCTCTTAATCAGAGTTATTCTTTGAATCAACATATATTCAAATATTAGTGGATGTGAAGGGAAACTATCGGAAAAATTAAAGGAATTAGCTAGTATGTGTATCATTTGAAAACTTAACGCTTATTTTATGGATAGTTCTGATTAAGAGAAGAACCTCCATTTTCAGATAATCCACAGACTAGGAATCTACATGAAATATTCAAATGGTACACACTAATTAACGACTGTCTGATTTAGAGAAAGCTAATTCAGATATTCCTCAAGCTACTTTACTGTTTGCTATGATTGTCGGAGAGCTTATCGAGTTATGAGCTACTCTTAATTCATCGCATCTAAGTAATCCAAACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTGTAGGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //