Array 1 2183680-2182735 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913022.1 Salinispora pacifica DSM 45543 = CNS-863 strain DSM 45543 SALPACDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2183679 30 96.7 31 .....G........................ ACTCCGGCCGAGGTTTTACCGGTGACCTCAT 2183618 30 93.3 31 .....G.......................T AGGCGCACTCGCCGGCCGCCCCGGTGGCGGG 2183557 30 96.7 31 .....G........................ TGATCCGGGATCTGCCGCGTGACCTGTGCCC 2183496 30 100.0 31 .............................. AACCCCCCGATGACCCCGCCACGGCGCATCC 2183435 30 100.0 31 .............................. TGTGTGCCTTAGCGGCACCCGTAGCCGCGGT 2183374 30 96.7 31 .............................A CAGGCTTCGGCCCGGCGAGTGGGGGCTCGCC 2183313 30 96.7 31 .............................C AAACTTTGCGTAGTACCAAGTTCGGGTGGCG 2183252 30 96.7 31 .............................T CGAACGGTGGGCACTCGGGCGCGAGAACGAA 2183191 30 93.3 32 ............................CA AGTCGGCGTCGTCATCTGGGACAACCTCGCCG 2183129 30 100.0 31 .............................. CAAACCCGGCCAACTCTCGAGGGTTGACCGT 2183068 30 96.7 31 .............................A TTGCGGCGAGGTATTCGGTGCCGGCGTAGGT 2183007 30 100.0 30 .............................. GGAAAAACACCATCATGAGTTGGTACGTCG 2182947 30 96.7 31 .............................C CGGAATACACGATCAACGACCTGCTCTACAT 2182886 30 100.0 31 .............................. CGTCGACCAGGGTGCGGACCTTCTTCGTCAC 2182825 30 100.0 32 .............................. GCGCCGGGTAACGCGCACATCGCGTCTCAGCG 2182763 29 90.0 0 .....................C-......T | ========== ====== ====== ====== ============================== ================================ ================== 16 30 97.1 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : AAAGGAGCAAGAAGATCCGGCAAAGCCAACTGACCAGCGGTGTCATGCCTCAGCGAGCCATCGCCCACAACATCCTCATATAGACCAGCACTCCGCATCGCATCGAACGCGCTCCCGTCCTTCTTCTGAAACCCCGGGGTTGCCTTGCCGACATCGTGTAACCCCGCCCAAAACATGATCAACGATTTAGCGTGGCTGTCGTCGGTGGCCAGCCCCTCCGTGATGACCCTCCGTTGGTTCGGGGCCAGATAGCGATCCCACAACGCACCAGCAACGGCCGCGGTATCAATCAAATGCCAGAGCAACGGATACGGTCTCGGGAGATGGTTAGACTTGCCCCAGATCCCAGCATCCACCCCGTCATGGTCGACCCCCAATCCGACCCCCTCCATTCGTACCCGCTCGGCAAGGGCATCAGCATGCAACCACAGCCGTACGACACCACGACTCGACCGACGCAAAACCGCGCCTACGGCTGATAAAAGCGCAGGTCACGAAGT # Right flank : CCTCGACGCTGTCCGGGCCGGTTACACCAGCGTCGGCCTGGCCGTTTCTGAATGTCCTGGCCATACAGTAAGCGGCGTTGTGGTTGGGATGTTGTCGTGCTGGGAGGGGTGTGGGCGCGGTGAGGACAGTTCAGGTTCGTACGTATCTGGTGCGGGTGGGTCGGTTGGATGAGTGGGTTGATGCGTGGCGGAGGTTGATTGTTCCGTTGCGGCGGGAGTTCGGTTTTGAGGTGCACGGTTCGTGGGTGGACCGGGACGCGAACGCCCATATCTGGGTGCTTTCCTACGAGGGGGGTCGGTCGTTCGCGGAGGCTAACGCGGACTATTGGGCGTCGCCGCAGCGGGAGCGGTTGGGGGTGAATCCGGCGGAGTTCCTGGTGGGTGAGCAGGTCCGTGAGGTGGAGCAGGTCTTGTAGCTACTCTGCTGCCGGTAGGCGGTGGGCGGCGCGTTCGTCGGGAGTGAGGGTCCGGACGACTCGGTGGCGTGCCGCGTGCAGGAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2192656-2193722 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913022.1 Salinispora pacifica DSM 45543 = CNS-863 strain DSM 45543 SALPACDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2192656 30 100.0 31 .............................. CGGATGTCGACGGCGTCAACGCGGTCACCGC 2192717 30 96.7 31 .............................G ACGGGTCCGCGTGGAACAGGCCCCCAGGCTC 2192778 30 100.0 31 .............................. TTGTAGTTGCCGGTGACCCGGCCGGCCTCCT 2192839 30 96.7 31 ............................A. CCACGCGCTACATCATCCGACACCAAGATCC 2192900 30 96.7 31 .............................T CGATCCGGGCGGCGTAGCCGCGTGGGAGGAC 2192961 30 93.3 31 ............................TT AACGTCATGGCCTTCCGGCATCATCACCACA 2193022 30 96.7 31 .............................G TGTGCACCCGGCCGGGGTAGAGCAAATACCC 2193083 30 100.0 31 .............................. TCTACAGCGCCACCTACACCGCCCCACCCGC 2193144 30 96.7 31 .............................A CGACCACGGCCGTCCAGCTCGCCGCCGCACT 2193205 30 100.0 31 .............................. GGGCGTTGATGGAGTCGCGGCCGGTGAGCTG 2193266 30 96.7 31 .............................G CGGATGCCGTCGCGGCAGCGGCGGCAGGTTT 2193327 30 96.7 31 .............................A CCCTCGCGATGATTGTCGGTGGGGTGCTGGC 2193388 30 100.0 31 .............................. TACTAAAATTGTTCCGGCTGATCAGTGATCA 2193449 30 96.7 31 .............................G CCAACACGGCCCAGCCAAGAATCTTGCGCAT 2193510 30 96.7 31 .............................A CGGCTACGCCTCAATGAAGGGCACCCCTCCC 2193571 30 96.7 31 .............................G CAGCGTGTGCCTCGACGGGAGTGCGGTCGGC 2193632 30 96.7 31 .............................T CCGAGGAGGTTGGGGCGTACCGGTTCGCCTG 2193693 30 93.3 0 .............G..C............. | ========== ====== ====== ====== ============================== =============================== ================== 18 30 97.2 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : CACCGACATTCAGCGCCTACTCGACCCCGACAGCACACCCAAACAGCGGCAACCTGCGGCCGAAATCACCTCCCTCTGGGATCCGGAGATGGGAGCCATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTGATGTGGCCTCCCTTGTCGTCCTAGCCACCACCGCCGTACCCGATCGCCTACGCGGTGCACTCAGCCGCTGGATGATCGAAGTCACCCCCGGCATGTTCGTCGGAACGCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCGCCGCCGTCCTCATCCACCCAGATGACACCGAGCAAGGCTTCTCCCTACGGACCGCAGGAGCACGTAGACGCCGCCCGGTCGACTTCGACGGCCTTACCCTGGTGGCGATGAGCCCCCAAGAGCACCACGACGACGCCCCCACCCCAGCAGAAACCATCTGGCCGGACGGCTGGTAAAACCGCAGGTCACTAAGT # Right flank : CTGGGTCGCCTACTGGCACGACTCCGCGGCTTGTCCTCCCCACGTACGCCGACACATGATCGAGCCTGTCCAGATCTGCAGGGCGCCGGCGGGTGAGAGCATGCCGTCGCTGGGTTCCCGGGCCCTGGTCGACCTCACCGCGCCGATGGCTCTGCGGACTTCTGCACCCGCGATCCAGTCACCGCCGACCGGACTCGCCTGAATCGCTCACCTAATCGGTGGCAGGTCCGCGGTGGTGCGTGGTCCTGCCACCGATCAGCGAACGGCCACAGTCGAGTCGAAGCGGTCCGCCACGTAGTTCAGCATGCTGATCAGCTCCTGTGCGCCGACCGCATACCCGGCCGGACGTGGCCCGTCGATCGGTAGGGAGCCGACATGGGCCCACTCCAGCCGTCCGTCGGGGCCGACCCGGCTCCTGGTCCGGCCCTGAGTGTCCGGGTGCAGGCAGTACGGAACGTCCAGCAGGCCGCGCCGGAAGGCGATGCGCAGGGCGGTGCCCA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3322042-3322736 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913022.1 Salinispora pacifica DSM 45543 = CNS-863 strain DSM 45543 SALPACDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3322042 37 100.0 35 ..................................... TCCAGGTGCCCATCCTCGTCGACGGGCCAGCCGTC 3322114 37 100.0 35 ..................................... TCCAGGTGCCCATCCTCGTCGACGGGCCAGCCGTC 3322186 37 100.0 38 ..................................... GATCCGGCGTCGTCGCCGGAGGTCTCATGCGCATCGCA 3322261 37 97.3 36 ....................................C TATCGGTGATGTTGCCGGGGCATCCGAGGATTTAGG 3322334 37 100.0 37 ..................................... CGGCGATGCTGGCCACGGTGTACTGGGCCAGGCCGAT 3322408 37 100.0 35 ..................................... GAGTTCCGCCGACTAGCCCGGACGCGGCCTGGGTA 3322480 37 97.3 37 ...T................................. CCTATACGGCCCGTCCAGGCAGGTCGCCTACCAGCGG 3322554 37 100.0 36 ..................................... CAGCACTGACCCCCTCACCCAGGGCAGACCCCTCTA 3322627 37 100.0 36 ..................................... CTGATAGTCCCAAACGAATTTGGCTAGCCGTTCAGT 3322700 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.5 36 GCCGCAATGGAGACCGACCGCTACGGGCCGGTGAAGG # Left flank : GCGCGAACGCCTGTACCAGCAGGAGATATACCGGCTCCGGCAGGAGAACGCGTGGCTCCGGGACGAGGTCCGGCACTGCTGGGATGCCATCGACGGAATGGGCCACGACATGGAGGTGTGGCGCCAGGACTTCGTCCTGGGTGAGCTGCTCGCCCAGGCAGACGCCCGCAGGCGGACAGCGGTCGTCAATCAGCGGCACCTGTTGGAGGTTCACATTCGCGAACAGCTCGCCGCCGAGTTGGAGGAGGCTCGACGTGGGGGCTACGCGAAGGGGTATGCCGACGGGATCATGCGCCACAGGACCGACGGCCAAAACTGAGTTCCCCTACCTGTCCCCTACAACGAATCAGGCCCCCTCACCGGAGGGGGCCTGACCTGCATTGCAGGAGATCATATTTAAGTGTCCGAGGGGCGATCGATACCGCCGCCCCACCGTCACAGTGCATGAACGATGACGTGGTAGTCAGCTATGGATGGTAGCTACCCGGCACTCGCCCCAT # Right flank : GGGCTCGCGAGCAGCGAGGATAGCCACCCATCATTGGCTAGACACTGACCGCCTGCCCGAATTGCTACTTTGGCCCCCACCCTGAAGCTCGGAACCTACGGCGCATGGGGCACCAACTTCAGGTTCCTAGATCAACTGCAAGGTGCTCACAGAAAGCGAGCGCGCGTTTGTCAAGTTGTCAAGGTTCGAGCCCCGGGCCAGACCGATTGTGATTCACGAGCTGCCATTGAACTGTGATCCCAGCAAGGAACGGACGCCGAGTCCATAGCCCCGACACCGCGTCAGGCCTGCACGGGAGGTCGCGACACAGAGCTTCTGGGCTGGCCGCCGCAACCGCCTTCTTCGCCCCACCCTTGGACGCCACCCTCGCCCCTTCTCCCGGTTGCCGTCCGAAAAATTCTATGGTGGGCCGGGTAGGCGACAGACTATGCCCCGCCTGGCTCGTGGACCTGACGTAGCTGGTCGGTGTGCTCGGCGTCCCACTCGGCGAGGACCTTCGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGACCGACCGCTACGGGCCGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 3331815-3331181 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913022.1 Salinispora pacifica DSM 45543 = CNS-863 strain DSM 45543 SALPACDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3331814 37 100.0 37 ..................................... CCTGCCGGCGTGGTGGAGGCAGCGCGTACCACGGTGG 3331740 37 100.0 38 ..................................... CTTTGCCTCCGGCGGGGATCTTGCACAGAGATGGGCGG 3331665 37 100.0 37 ..................................... ACGGGAGTTGAGGGCGTGGGGCGGTCCGGGCTTGGTC 3331591 37 100.0 38 ..................................... TGAGTTTGATTGAGGACCGGGGGCAGGCCACGGTTAAG 3331516 37 100.0 35 ..................................... CCGGCGTTGGGTAGGCCAGCGATCATGATGTTGAG 3331444 37 100.0 38 ..................................... CGCGGCTACCCCTGGTCGTCCGGATCCGAGCCGATCGC 3331369 37 86.5 39 ...........T........C..A........AT... CTTGCGGTGTCCCAGCCGGTGGGTGTGGGCGTCCGGGTC 3331293 37 81.1 39 T..C..T......A...T...T.C............. GACGAGCGATGTGGTCTGCGTCCTCCCCGACATGCCATG 3331217 37 91.9 0 ..........T.G............G........... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 95.5 38 CCTTCACCGGCCCGTAGCGGTCGGTCTCCATTGCGGC # Left flank : CCAGGCGGGGGGCATAGTCTGTCGCCCACTCCGGCCACTCCGGCCACTCGGCCCACTCGGCCCACTCGGCCCACTCGGCCACCGGCCACCCGGCCCACCATAGAATTCTCGGACGGCAACCGGGAGAAGGGGCGAGGGTGGCGTCCAAGGGTGGGGCGAAGAAGGCGGTTGCGGCGGCCAGCCCAGAAGCTCTGTGTCGCGACCTCCCGTGCAGGCCTGACGCGGTGTCGGGGCTATGGACTCGGCGTCCGTTCCTTGCTGGGATCACAGTTCAATGGCAGCTCGTGAATCACAATCGGTCTGGCCCGGGGCTCGAACCTTGACAACTTGACAAACGCGCGCTCGCTTTCTGTGAGCACCTTGCAGTTGATCTAGGAACCTGAAGTTGGTGCCCCATGCGCCGTAGGTTCCGAGCTTCAGGGTGGGGGCCAAAGTAGCAATTCGGGCAGGCGGTCAGTGTCTAGCCAATGATGGGTGGCTATCCTCGCTGCTCGCGAGCC # Right flank : GGGTTCTGTCGGGGGGGTGGATGGGTAGCTGTTGGTCTGTGTGTTGCCGCCGTTTGTACTCGCGGGGAGGTGTGGGCGAGTAGAGTCGCGCGTCAAGCGAAGGTCGGTCCAGTGCTGCTACCTTCCTCCGGTGTCACTCAGTCCCGGCTCTGCTTCTGATGGCACCGTGCTCCGTTGTGGCGATGCAGGTCGTGCGACCTCTTGTGGATCGGATGCATGTCCCTGGCCCTAGGTCAGGGCTCCGATCTTTCTGTCGGCAATCGGACGTAGATTAGATGCGGGTCGAGTGACAGGCATGCAGGAAGTTCAGAGTAGGTTGACCGTGCGCCAAGGTCCTCGGGTAAGTAGCGATGCGGGTGACCTTCACCGAACTCCGCCCCCTTGCAGGGAGTGTCGATGTCCTCTTTTGAGGCCTTTTTCGAGCAAGCGACCGGTGTGCCTCCGTACGGGTATCAGGCTCGGCTGGCGCGCGGTGGTCTACCGGCGGTGGTTCAGGCGCC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCACCGGCCCGTAGCGGTCGGTCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //