Array 1 2748-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLD01000014.1 Enterococcus saccharolyticus strain DSM 20726 Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2747 29 100.0 36 ............................. ATGCTTAAAATGTTTGTCGTGAAATTCCGGGTCATA 2682 29 100.0 37 ............................. TTTTTTTTAACGTGTTTGTCAACTAATTTTTGACTGC 2616 29 100.0 33 ............................. CTTAATAATTTAGATTATACAGGCAAAATACAA 2554 29 100.0 37 ............................. TTGACAAACTCTTTTATCTTTTGCCCTGTTTGGTAAT 2488 29 100.0 36 ............................. TGAAAAAGGTGGCATTTTTTGGCGGATTTTTCGCAC 2423 29 100.0 36 ............................. ATGCTTGAACACGCATTTCAATTTCTTTTTCTTTGA 2358 29 100.0 37 ............................. TTTGCTAAACATACATTGACACCACAAAAACTTTTAG 2292 29 100.0 35 ............................. TTGGTAAGAACAATTATAAGACATTCTTCTTTGCT 2228 29 100.0 35 ............................. TTGTAATAGATTGTAACTGTTTCTTTTTCTGTTTC 2164 29 100.0 35 ............................. CATCAAGAAAAACACAATCTTGGTGTTACGAGTTT 2100 29 100.0 35 ............................. TATGGAAAAACCTTACAAGAAACAGCGGTTGATGT 2036 29 100.0 35 ............................. TGAAAAAATTAGTTAATCATTTTAACGCTATCACA 1972 29 100.0 36 ............................. TTTAAACCTAATACGTCAAACGTATAATCGGTTTTC 1907 29 100.0 36 ............................. CTTTGTCCCCTTGAATCTTTTTCATTATTTCATATA 1842 29 100.0 35 ............................. TTTGATTGATACAAGGGTTCATGCAATCGTTCGCA 1778 29 100.0 36 ............................. TAGAAATGGATAACGCTGCTACTTATCCGGATTTAT 1713 29 100.0 36 ............................. CACGACAAAGTTTGCGCAAATTAAGTTAATCAAAGA 1648 29 100.0 36 ............................. ATATTAACGTCAATACCTCTGTACCTTTAAGGCAGA 1583 29 100.0 36 ............................. TTCTAAGGCGTTCTAGGTTTAAAGGTTCATTTATCT 1518 29 100.0 35 ............................. TTAATTTTACAGTATAAATACGGACGGGAGACAGG 1454 29 100.0 36 ............................. CAAGGACAATTAACTATTAAAACCGCTGGAGTATCA 1389 29 100.0 35 ............................. CTCAAAACGTTCAAAAAAGCTATAGATTTAGGGGC 1325 29 100.0 35 ............................. GCGTACAAAATGGTTTTCTATTCAGTCAGGTACGA 1261 29 100.0 36 ............................. CGTGCATATCAACGGATTGTTAAGTTCTAAAGATAG 1196 29 100.0 36 ............................. CAAGGACAATTAACTATTAAAACCGCTGGAGTATCA 1131 29 100.0 35 ............................. CTCAAAACGTTCAAAAAAGCTATAGATTTAGGGGC 1067 29 100.0 35 ............................. GCGTACAAAATGGTTTTCTATTCAGTCAGGTACGA 1003 29 100.0 36 ............................. CGTGCATATCAACGGATTGTTAAGTTCTAAAGATAT 938 29 100.0 36 ............................. TTTTTAATTCTTTAAATGCTGTTTTGGAATTGTTAC 873 29 100.0 36 ............................. GCACCAGAAGATGTTCAAGTGCAGATTTCTACTATC 808 29 100.0 36 ............................. CTAATACGTCAGAGACAACGTTATCTAGTAACTATT 743 29 100.0 36 ............................. TTTGCAAATTGAGAAGCTAATTTAGAACGTAATTTT 678 29 100.0 36 ............................. AAATACAGCATACAACGAAATTGCAGGACGTACTGG 613 29 100.0 35 ............................. AGGAATTTCTCGTTTTTACCTGGCTTATCTGCTTT 549 29 100.0 36 ............................. AAAGAAGTTCGTCAAGTTTATCTTCTGTCGTTTGTT 484 29 100.0 36 ............................. TCGTTCCGCTCCTCACTCGCCAATTCTCTAATCTCT 419 29 100.0 36 ............................. TCACGAGCGACAGAGCAGCAACGGACTTCACAACGA 354 29 100.0 37 ............................. TTAGGTAACTTTCCAACGCTTGTAGCACAACATCTTT 288 29 100.0 36 ............................. ACGAAAAACGGCTCATTATTTACTAAAACTGTTCGA 223 29 100.0 36 ............................. TGTCACAAGGCGAGTGGAAGAAAGCGAAAAAAATTG 158 29 100.0 36 ............................. TGAAAAAACGTTTGGATCAATATCTTGCGAATCAGC 93 29 100.0 36 ............................. ATAGAATAAAAACTTTCGTAGCATTTAATCATAATT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ===================================== ================== 43 29 99.9 36 GTCTTAATTTAAAATAATGAAATGTAAAT # Left flank : TGAAGGGTTTAAAATATGGTGGTAATAGATGTATATTATTTTAATATATGATATTTCTACTGAGGGTTCTGGTGCAAGAATTTCTAGAAATGTTTTTAAAATTTGCAAGAAATATCTAACTCATGTTCAAAAATCTGTTTTTGAAGGAGAATTAACTCAAAGTAAATTAAAGAAGTTACAAATAGAGCTATCTGAATTTATTCGCGATGATATGGATTCTGTAGTTGTTTTCAATAGTACTCAACGCAGATGGTTGAAAAAAGACTTTTGGGGAATGAATGAAGAAGAAAAAACTTCTACATTTTTCTAGTCTATCTATCGTTAATAGTGTAAAATTAATAATAGTTCGACAGAATGAGTTGAACAATTGATAAATCAAGGTTTTAACTATAAAAGTTTAATGATATTACCATCAATAAATTAAATTTGCGATTAAAAAAGGACCTATCAACAGAAATGCGAAATGAATCCTATATGTATCAATATTCTTATGCAACGGA # Right flank : A # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATTTAAAATAATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 115023-114857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLD01000007.1 Enterococcus saccharolyticus strain DSM 20726 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 115022 33 100.0 34 ................................. TGCTAAAACAGGTAATGCTGCTGTGTTCACTGGG 114955 33 93.9 33 ....................T.....C...... GTTTTAGTGATGAAGATGTGAAGGATTTTACTC 114889 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 TGTTGCAGTCTTCATGACTGCATGGATTGAAAT # Left flank : TTGTTGTTGAAAATGGTACAGCTCGCTTACAAGAAGGTAATTTAGCAGGAAGTATTTTAAAATTAAAAGAAGCTATTAAAAATGTTGTTGATTGGGAATTAGCAACTCCAGAACAAGCAATTATGATGGCAAGTTTAATTCCAGCAGTTAGTTGTAAAATTGATGATGTTTGTGGGATGATAAAAAATGGTCGCGATGCCGATTTCATTGTTTTAAATCCTGATATGACTTTAGTTGCAACTTACTTAGATGGTGTAGAACGTTTTAATGCATCTAAATAAAAATTGGAACGGAGTGAAGAATATTCACTTCGTTTTTTTATTTCGAATAATAATAAAAGATGGTATAATTAAGTAAGATAAAGTGTTTTATTCCTTGGTGCGAATCCCATGCTCCCAGAAAATCCCTAGGAGATTCGCATCATAAAAATGATGTTAAATGATAAAACGATGAGGAAATAAATGTGATTATATTCGATTTTGTACAAAAATAAATCGCCG # Right flank : CATAAAATGCGTCATACACATGCTACTTTTTTATGTCGCACTCTTCCTCACTACTAAACAAAAGACAAAATCATTACTCTTCTATATCATTTTTAAAGCGAGCACAGTCTTATGTCTCGTTTTTTTATTGCGGAAAAACGTCTGTATTCTTATTTGTTTGTGTTACACTAAAGAAAAAGGAGGAGGTAAAATGAGTTACATTGATGTGATCGATGAAGTGAAAAAATACCAAATGGGTGATACGATGATTATGGCTAATGATGGTGTCACGTTTGGTGTTGAAAAAGGGGAAGTAGCTGTGATTTTAGGACCAAGTGGTGCGGGAAAATCGACAGTTTTAAATATATTGGGTGGTATGGATAGTTGTGATAGTGGTCAAATTATTATTGATGGTGTTGATATTGCAAATTACAATGCCAAACAACTAACCGCTTATCGTCGAGATGATGTCGGGTTTGTGTTTCAATTTTACAATTTAGTTCCTAATTTAACTGCAAAAG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCAGTCTTCATGACTGCATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //