Array 1 74-2038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJC01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 74 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 135 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 196 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 257 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 318 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 379 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 502 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 563 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 624 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 685 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 746 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 807 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 868 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 929 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 990 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1051 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1112 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1173 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1234 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1295 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1357 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1460 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1521 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1582 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1643 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1704 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1765 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1826 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1887 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1948 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2009 29 96.6 0 A............................ | A [2035] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8748-7255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJC01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8747 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8686 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8625 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8564 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8503 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8442 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8381 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8320 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8259 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8198 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8137 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8076 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8015 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7954 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7893 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7832 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7770 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7709 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7648 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7587 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7526 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7465 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7343 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7282 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //