Array 1 53705-53405 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGW01000003.1 Aggregatibacter actinomycetemcomitans strain 310b scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53704 32 100.0 35 ................................ CAAAACAGTGATTTAGGTGCCGGTGTTAATGCAGC 53637 32 100.0 34 ................................ CGAAGACGCAGTGGAATCTCGTCGTTTTGAGCGT 53571 32 100.0 36 ................................ AAATAACCGAAACCCTTTCTAAAGCAACCTCTTTGG 53503 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 53436 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 136187-138676 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGW01000003.1 Aggregatibacter actinomycetemcomitans strain 310b scaffold3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136187 28 100.0 32 ............................ ATACCAAAGTTCGGGTGTAACTACACTCCGAA 136247 28 100.0 32 ............................ AAGTTCAAAGGGCGAGAAAGTCGATTATTCCC 136307 28 100.0 32 ............................ AGAAGGTGAAAATTCAGCGTAGGTATCACTAA 136367 28 100.0 32 ............................ ACACTTATTTGTTGCGTCGTCTCAGTCAGCGT 136427 28 100.0 32 ............................ ACGATATTTAAACGTGAGATAAGTCCTTCTTC 136487 28 100.0 32 ............................ TATTTCTCGATTCCGGTAGCGTTCAACAATAA 136547 28 100.0 32 ............................ ACATATACCACTCATTAATCCCAATGCCGCAA 136607 28 100.0 32 ............................ TCATCAACGTGCTCCGCCCCAAACAGATCTTT 136667 28 100.0 32 ............................ ATATTTTAGTAATGTGCGTTTATGATACTTCA 136727 28 100.0 32 ............................ ATACATAACAATTTAATTTCTAATAAATTGTT 136787 28 100.0 32 ............................ ATATTATTTAAAGCATCTAGTATAATGTCTGC 136847 28 100.0 32 ............................ TACCTCTTCACTTCAAGATTGCAAAATTGCCC 136907 28 100.0 32 ............................ TTTTTATTTAAACATGTTTATATTTTATGTTA 136967 28 100.0 32 ............................ ATTATCAAAATTATTACTACCTATTTTCAGTT 137027 28 100.0 32 ............................ ATACTATCCTATTAATCATCATAAATAATGCA 137087 28 100.0 32 ............................ TCCAAAGTACGGTATTGATGAAGAAATGCTTT 137147 28 100.0 32 ............................ TTTGATAAAAGATTCAATTACTGATCGGGGCA 137207 28 100.0 32 ............................ AATTACCATGAAATAAGTCGACAAATTTTTCA 137267 28 100.0 32 ............................ ACGAGCCATAGCTTCTTTCCCAATGCCTGTTA 137327 28 100.0 32 ............................ TCACACCTACCTTATGAAAGCTCATAGAATGC 137387 28 100.0 32 ............................ AATGCCTGTTAAACCCAACAAAACAAAGTAAT 137447 28 100.0 32 ............................ TTCTGCGCATTTAGTGACAATTATCAATCATG 137507 28 100.0 32 ............................ CACGATTTTTACCCGAATTTTGTGTCCTTTTA 137567 28 100.0 32 ............................ TTCATCGAATGAGCTATTCATTTTATAGTCAC 137627 28 100.0 33 ............................ TAATAGGTCACGAATGTCGAAGAAAATTATGGT 137688 28 100.0 32 ............................ AGCTTTAGAAGGTAAGAAAGTTTATACTGAAA 137748 28 100.0 32 ............................ ATTTAAACACACCTTTTAGATTAAAATAGTGT 137808 28 100.0 32 ............................ CACGATTCTGACCCGAATTTTGTGTCCTTTTA 137868 28 100.0 32 ............................ TTCTATCTATTGGTGCCTGTCCATGGCAAATT 137928 28 100.0 32 ............................ TACACTAAATACCATATAATTTTTTCCGCCAA 137988 28 100.0 32 ............................ AATGTCACCTTTAATAAAAGATTTAATTACAG 138048 28 100.0 32 ............................ ATATTGCAATTTGCTCACCTTGAATACTTAAT 138108 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 138168 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 138229 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 138289 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 138349 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 138409 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 138469 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 138529 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 138589 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 138649 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAAAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAANATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //