Array 1 1262455-1262134 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622359.1 Pseudoramibacter alactolyticus ATCC 23263 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1262454 36 100.0 37 .................................... TGTCATTAAATTTGCGATACGTAAAAGGGGAACTGGG 1262381 36 100.0 33 .................................... TTTTGTGCTTTCGTCTTTCCAGCGGCGGATTTC 1262312 36 97.2 35 ................T................... TCGTTAAAAGTTAGGTATTCGTTTCTCATCATCGT 1262241 36 100.0 36 .................................... ATTTCCTGAAGCTTCATCATTCTGATGTCTTTTGCC 1262169 35 91.7 0 ...................-............C..A | C [1262136] ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.8 36 ATTTAAAAACAAAAGCCCCCGACAGGGGACGGAGAC # Left flank : ATGGTTATTTGAACAAAAATGTTTTGGGTGAGTACTTTTCTGAAGGTTATCGGTGTTATTGCTTAGAGCCAAGTGTCCTCAAGAAAAAGGATAAAGAATTGTATGATTATATTCGGGGTTTGCTATGAAACAAGAAGTTATCGACAAAGCCTTAGAAGCTAAAGATACCTTAGAATTCTATAAGATTTTGTACATAAATGGTTATAATGCTGACGATGAAAGTACGTGGCCCAAAATATTGCAAGATAAGTATAAAAAGTTAGTGGGAGATTTTGACTTTGATTGTGTCCCAGATTATTTTTAAAGCACCTGAACGGGGGTAGAAAATGAGCACAAGTTTTAAGATCATTTATCGCATTTTGTCCATTCTTGAAAAGTCTATGAATTATCCGGAGTTTGATCCGGATTCTATCAGCGCCAAAACGCTTGGTGTTTCAGAAGAACGGTGGCGGTTGTGTATCCAAATGATGGCTGATGACGGATATGTTACAGATGTGCAA # Right flank : AGTCTTTAATCATCAGAAAAATTTAAATCGGAGGTGTGTATGAGTTTGCTTTATGTCAGTGAGAACGGCGCGGTGATTCAATCCCAGGCGAACCGCATCGTTGTGAACACGAAGGACGGCGTGAGCCGGTCCATTCCCGTCGAAACCCTCGAGGGCATTACGCTTTTGGCGCCGGCCCAGCTCACAACCCAGTGTATGGAGACCTGCATGAAAAAGGGAATCGACGTGGTTTTCTTTTCGAAAGGCGGGCATTATTTCGGCCGGCTGACGGCCACGGGCTATCAAAAGGCGGGACTGCAGCGGCGGCAGGCAAAGCTGTATCACAGCGATTTTGCCATTGATCTCAGCCGGCGGATGGTCGCCGCCAAATTGAACAATCAAGCGGTGATGCTTCGGCGCTATGCCAGGAATCACGCGGTCGATGTGAATCAGGAAGTGATGCACATCCAATGGGCAAAGGAACGCGCTGCAAGCGAGCGAGCCATTCCGGAAATCATGGG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAAACAAAAGCCCCCGACAGGGGACGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 1263015-1263775 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622359.1 Pseudoramibacter alactolyticus ATCC 23263 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1263015 36 100.0 37 .................................... AAGCAAATCAGTTGGGCAAAAGATATCAGAGCAGAAA 1263088 36 100.0 37 .................................... AGGAAGTAAAAAAATGATAAGCTGGAAAAATGAAAAT 1263161 36 97.2 37 ......A............................. ATTGACTACTACTCTTTAAATGGCGGTCAAGTGTGGC 1263234 36 100.0 39 .................................... CGTGGAATCAAAATTATTTATGGGGGTTTGCCCGAAGTG 1263309 36 100.0 38 .................................... GTGCCTATGAAAATTTATATTAGCCAGCCACTGGTCGG 1263383 36 100.0 34 .................................... GAGTAAAGGAGGAAGTAATGAAGACAGTGTATAT 1263453 36 100.0 35 .................................... GATCTTGGCGGAACAATTCGATATCTGCCAGGAAA 1263524 36 100.0 36 .................................... GACAAATGGTTTTTTATTAAACTCGCCGTTGGCAAT 1263596 36 100.0 38 .................................... CATACGCTGTGTACGATAGAGACGATAGCTATAAAATG 1263670 36 100.0 34 .................................... GCACGCGCTTTTTTCGTGTGACCGGCGTTAAAAG 1263740 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 99.7 37 GTCTCCGTCCCCTTACGGGGGCTTTTGTTTTTAAAT # Left flank : TTCTGAAACACCAAGCGTTTTGGCGCTGATAGAATCCGGATCAAACTCCGGATAATTCATAGACTTTTCAAGAATGGACAAAATGCGATAAATGATCTTAAAACTTGTGCTCATTTTCTACCCCCGTTCAGGTGCTTTAAAAATAATCTGGGACACAATCAAAGTCAAAATCTCCCACTAACTTTTTATACTTATCTTGCAATATTTTGGGCCACGTACTTTCATCGTCAGCATTATAACCATTTATGTACAAAATCTTATAGAATTCTAAGGTATCTTTAGCTTCTAAGGCTTTGTCGATAACTTCTTGTTTCATAGCAAACCCCGAATATAATCATACAATTCTTTATCCTTTTTCTTGAGGACACTTGGCTCTAAGCAATAACACCGATAACCTTCAGAAAAGTACTCACCCAAAACATTTTTGTTCAAATAACCATTAATATAAGCTCCTTCTCCTCTAAAATCATAAGGGTATATATATCCTTGATAGCCCGAGA # Right flank : TCCTCCCGCCGGCATCCGTCTGCCGGTGCGGGCCGGATGCCTTTTTGCGGGGCAAAGAAAAATCTGTGTAAAAAAGGAGACTGTGTTGGGCCATTTTTGCGCCAAAGGCCCGATATGCGGGCATCGGCGCAAAATCATTCGATAGCCAGCCGGCATTTGCCAAATTCATAAAGCTTGCCTCCATATCGGGCGCACTTCACAATATGAGGAGAAACCTTCTGATTCCGCTCATGATGATGATTGCGGGGCACCTTCGTCTGTTGAAAAATCTGCCGGATCGTTTGAATCCCCGCCTGCCGCCCCAGCGCCGCATAGATGACGGTCTTGGTGGCAAAGCCGGCATTGCCGCCGAGATAAACCTCGCTGCCGGTCAAACGGTCCATCCCCAAAAAGGCGCTTAAAAAGCATTTTTGATACACCTCGTCAAAGCGCGCGACCGCTTCCAGCAAGGCCTCCTTCGTGAGGGCGCATCGGCTGGGATCAATGGTCAATGAAAAGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCCCTTACGGGGGCTTTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 1495574-1486879 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622359.1 Pseudoramibacter alactolyticus ATCC 23263 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================================================== ================== 1495573 33 100.0 35 ................................. CCAGCCGATTCGCCGGGCCCGCGCTAAGCATTCGG 1495505 33 100.0 33 ................................. GCGCGTCACAGGCTTGCTCTTTCGGTGCCGCAA 1495439 33 100.0 35 ................................. TTTTTTAATCACGCGCGACGATCACCATCGCTCGC 1495371 33 100.0 35 ................................. CTGAATCCTGCCATCTGAACTGCATCCCGTACCCC 1495303 33 100.0 34 ................................. TTCTTGACCGTACTCTTGTTCGCCGTCCCAGAAA 1495236 33 100.0 34 ................................. GTTGTCCGCGTTGCCTTGAGCCAGATCGACTGCG 1495169 33 100.0 33 ................................. AAAGTACCACTAACGCCGGCAGCGGTTTTCCGG 1495103 33 100.0 33 ................................. TTCTGGAGGCGGTGGTATCGAGATCATCCACGG 1495037 33 100.0 36 ................................. GAAATTGCTGACGGCGGCACGTTCACGATGGGCAAC 1494968 33 100.0 33 ................................. TCCAGTACTGCCACTGCCTGCTGCGCATAATCT 1494902 33 100.0 32 ................................. CGCTCCACGGCGTTGCGGATACTGTTCCCCAG 1494837 33 100.0 34 ................................. TTTCGCGGGCGGAAAAGGCGTGTGCTTTGGGGCC 1494770 33 100.0 34 ................................. TGCAACGTGTACCGACAGTTCTTGTCCGGCAATC 1494703 33 100.0 36 ................................. CACTTTGGCGTGTCGATCACGCGACTTGATAAGCAT 1494634 33 100.0 33 ................................. ACGTCGGTTCTGGACGGGTCGAACGATCTGGCC 1494568 33 100.0 36 ................................. AGGTTTTGCTCATCCTGACTACGGTAAGGGCAACGG 1494499 33 100.0 34 ................................. GTGAAAGCTGTCCGTAAACTGGATTGCTTCCCGT 1494432 33 100.0 35 ................................. GCCGTAAAGTTCCAGTTCGCTAATAACTGCCTCGG 1494364 33 100.0 34 ................................. TTTCTTTCAGTGGCGTTGCGACGGTCGCACCACC 1494297 33 100.0 34 ................................. GATTAATTACTTGGCGGACAATGGACCAAAAATA 1494230 33 100.0 32 ................................. CTGATTCACAGTTTCCATGTTCGTCCCTCCGT 1494165 33 100.0 33 ................................. CTTTCGCGAAACATTCAACCACCTTTCCCATTT 1494099 33 100.0 33 ................................. GCATTGGCAATTGTTGTGGATGTGTCCAACATG 1494033 33 100.0 33 ................................. TTTTTAAAAAAACAGCAATAAAAAAATCCCACC 1493967 33 100.0 32 ................................. TTACCCGCCAGCCCATCCGTCGCCGATTTCCA 1493902 33 100.0 35 ................................. GCGGCGTGGGAAGCTATAGTATCCAAAATTGGCAG 1493834 33 100.0 33 ................................. GAGGCCGGATTCGCGCATCAAAACCAAATTGGC 1493768 33 100.0 35 ................................. GTAATGATTTCAACTTCTTCCATGATACCCCCCCA 1493700 33 100.0 32 ................................. GATCGTGAGCATTGTTATTGACGATGGTCGCG 1493635 33 100.0 34 ................................. TGGCCAGATTTTGAGTGTACATTCGCCACGTCTG 1493568 33 100.0 34 ................................. TCTTTATTTTATATCTATATTATACATGGAGCCA 1493501 33 100.0 34 ................................. GTGGACCGTATCGGTGCATTCGTCCTTCCAAAAT 1493434 33 100.0 35 ................................. TCGTCGGAACTATTTGTCGCAAAAAAAATGATAGT 1493366 33 100.0 33 ................................. CGGTTTGACCATACAAATGCACCACGAAGGGCA 1493300 33 100.0 35 ................................. TTAATCTCGACTGCCCGAACGGTTTTTTGCTGGTC 1493232 33 100.0 35 ................................. TCCGACGATGCCGTCAGCGGATAAGCCTTTCGCGC 1493164 33 100.0 35 ................................. GCAGTTGGGAACGCCGTCATAACAGAAATCCACCC 1493096 33 100.0 33 ................................. CTTCGCACAGGAAGAAATCTACATGTTCCTTGT 1493030 33 100.0 33 ................................. GAGCGCAACTTGCGTCGTCATAAAGTCCGCGAA 1492964 33 100.0 34 ................................. TCCAACGATGCCGTCAGCGGATAAGCCTTTCGCG 1492897 33 100.0 34 ................................. TAAACTGTTCTAGCGCCGTTTCAAATCCAAATCT 1492830 33 100.0 34 ................................. TGCTTGAAGCCTACTCACAAACATTTAAAGATTT 1492763 33 100.0 34 ................................. CTTTGACCATGTTGTTGATATGGTCTTTAATCTG 1492696 33 100.0 34 ................................. TTTTCGCGTTGTCGTCCATGTAGGTAACATTAGC 1492629 33 100.0 34 ................................. GCATACTGGCATAGTCAATGCCGACGGTGCATAG 1492562 33 100.0 33 ................................. TAATGAATTTTTTACAATGATGGGCCGAGGCAA 1492496 33 100.0 34 ................................. GGAGGTTTGCCTTTGTGGCGCCGTGATCCCAGAA 1492429 33 100.0 33 ................................. GAGGTTTGCCGCTGCCTGCGCTGAGATATTCAT 1492363 33 100.0 32 ................................. CGAATAGCTTTGCGCAAAGCTTCGGCTTTGTT 1492298 33 100.0 34 ................................. CATGACTTGCGCGGTATCTCCGGCGCCGGCGGTT 1492231 33 100.0 35 ................................. TTACGCGGTCGGCATTGTTTTTAAACAGCGTCTCG 1492163 33 100.0 35 ................................. TTCGTTTGAAATAGTTTACATGGGACGGGCAGTAG 1492095 33 100.0 32 ................................. TTTATATTCTGCGATTAGATGATTTCGTTCAA 1492030 33 100.0 33 ................................. TTTGCTGGTTGCATTCCAAACCAATGGGACCAA 1491964 33 100.0 33 ................................. CTTCGCACAGGAAGAAATCAACGTGTTCTTCAT 1491898 33 100.0 34 ................................. TCTTCGGCCAGAAGAACATGCCCACACGCGATTC 1491831 33 100.0 34 ................................. TTGCTTCGATGATGCATCTCGGCATATTCCGCAG 1491764 33 100.0 33 ................................. GAACAATGCCGCGCTGCCCGCCCCAGATGCCGC 1491698 33 100.0 33 ................................. GACTAAGAACTCTAATGCTTTTCGGTATCCCAT 1491632 33 100.0 34 ................................. TTTATCCCGCGTCAAATATTCTTCATGCTTCTTC 1491565 33 100.0 34 ................................. CTGTTTTTGGGGAAAAACACCGCTTGGCACGCAA 1491498 33 100.0 34 ................................. TACATTATCCATGGTCGGCCAGCCTGGTACACGC 1491431 33 100.0 34 ................................. TACTTTAGTGTCCATGGCGACGTCAAGGGGGAAA 1491364 33 100.0 36 ................................. GAGGAATTATTAGGGCGGCAGCGTCACGATCCGGCT 1491295 33 100.0 35 ................................. CTGAGCATCAAAATCCAGATGGCAGTGAGACTGGC 1491227 33 100.0 33 ................................. AAAACCGGCCTGCGTCGTGGTGAGCTTTGCGCG 1491161 33 100.0 32 ................................. TCTTTGGCCAGCAAAACGTGTCCGCATGCGAT 1491096 33 100.0 33 ................................. ATGGCAAAGGCCGACGCGCCGAGGAGCAGATTG 1491030 33 100.0 33 ................................. GCCTCGGTTCGCGTAATTGCCCTCAATGATCTT 1490964 33 100.0 34 ................................. CTAACTTTCTGCCACCGTAAAGGTAAACGGCGGC 1490897 33 100.0 34 ................................. GCAAAGAGCAGGCTAAAACCATTTTGGAGTTCAA 1490830 33 100.0 35 ................................. CGGTGATCGTCGCCATCAGCGCTTTTCCGATTCCC 1490762 33 100.0 33 ................................. TACGGGGCGGCATCACTCAACGAGAAGGTAAAG 1490696 33 100.0 34 ................................. GCTGAAAACGCCGGTATTGCTTTGGGGCGTGCCC 1490629 33 100.0 34 ................................. TTGATGTTTTTGTCATATATTACCTCCAATTTTA 1490562 33 100.0 34 ................................. TTATACATTGGAGCGAACAACGCAGGTGATATGG 1490495 33 100.0 33 ................................. TAAAAGTGTGGGGCGGGCAACCGCCCCAATTAA 1490429 33 100.0 34 ................................. TAAATACAAAAACATGTGTTTTTCGGAAAGTAAG 1490362 33 100.0 33 ................................. GATTATTCAATGAATGCATTTGTTAAGAGCCGT 1490296 33 100.0 33 ................................. CAAAATCTTGTGACAACATATTTCATTTTGATT 1490230 33 100.0 34 ................................. AATCACTTGAATTGGCATGCTGCCAAAAAAATCA 1490163 33 100.0 79 ................................. GATTATTCAATGAATGCATTTGTTAAGAGGCGTGTGAGTAGAAATGAAAAGTGTGATTGCATTTACATGCTGGCCGGGT 1490051 33 100.0 34 ................................. TTCGCGATTGGGCGGCTGAGTGGTTGAACCTGTG 1489984 33 100.0 34 ................................. TCTTACCGATTGCACAGTCGATGGTAGACCTTGG 1489917 33 100.0 34 ................................. TCATTTGTAATCACAAAGAATTTCAAGCCCGCTG 1489850 33 100.0 37 ................................. GCTGAATGCCCCAGCGGAATGCGTCGAACTGTCCGAC 1489780 33 100.0 34 ................................. TTCGTCGCTCAAGTCGTAATAACTTGAACACTCG 1489713 33 100.0 34 ................................. TGGAATACCGTTGATAATGCCAACACCAAGATAC 1489646 33 100.0 34 ................................. TTTTATACCAGGATACGCGGAACTTAGGCATGCT 1489579 33 100.0 35 ................................. AAGTTTTGACTACAACGCAGAGCGGATCAGTGCAT 1489511 33 100.0 34 ................................. TTGTCAATAAAGTTTACAGAGACGTTACATTCAC 1489444 33 100.0 35 ................................. AATCCAGCAAGCACTTGATGCACATCCTCCGGACC 1489376 33 100.0 34 ................................. TACAATTCGCAATGAAGAATATAAAAAAATCTTA 1489309 33 100.0 33 ................................. TTTCGGTATCTGCGCCGAACTCGCCGTCCGCAC 1489243 33 100.0 34 ................................. TGCATCGCGAAATTAGAACCGTGGTAAACATAGA 1489176 33 100.0 34 ................................. TCGGCCGAGCTGCGGGCAGGCGGCTAAAGTTTTC 1489109 33 100.0 34 ................................. TTTTTGGAAAAACAGCAATAAAAAAATCCCACCA 1489042 33 100.0 34 ................................. TCATGCTTACCTTCCTGTGCTCCCGAATCCACCA 1488975 33 100.0 34 ................................. CATCTTTCGGTACAATCGGTAGTTTTTCGCACGG 1488908 33 100.0 33 ................................. TTAAAGCGCTCTTCGCCGTCGAAAGTGGCTATG 1488842 33 100.0 35 ................................. TTAAAAACGATGCAATCATATGTGATTCCATCATT 1488774 33 100.0 33 ................................. GTGGCTGTTTATACGACGAACGCCAAGACGATA 1488708 33 100.0 34 ................................. TTATTACAGAATTTAAATTCAACGCCATATCTTT 1488641 33 100.0 34 ................................. TTATTACAGAATTTAAATTCAACGCCATATCTTT 1488574 33 100.0 34 ................................. CAATTTTAATTGGCCCCCTTTCGGGGGCCGGCGT 1488507 33 100.0 34 ................................. TGCGAAAACTGTCCATAAACTGGATTGCTACCCG 1488440 33 100.0 34 ................................. TCTTGATGCCGCTGTCGCCTTTCTCGAAGGTCGC 1488373 33 100.0 33 ................................. TCGGCATTCCCTCGATTAATTTTGGAACGCCGT 1488307 33 100.0 33 ................................. TCGGCATTCCCTCGATTAATTTTGGAACGCCGT 1488241 33 100.0 32 ................................. GCAAGCTTCTTCATCTTCGCCATAAAGCATGG 1488176 33 100.0 34 ................................. TGACGCCGGATCTATATAGGGCGCCACGGATAGC 1488109 33 100.0 33 ................................. TATTTGAGTTGTGGTCATACAGCGTATAGCCTT 1488043 33 100.0 33 ................................. TTCTTCTCTCAACGTTTGACTTTTCGTCATCGG 1487977 33 100.0 33 ................................. TTGCGAGAGAGCGGCTGGGTTGGTGGACGCCAA 1487911 33 100.0 34 ................................. CAGGCAATCGAGACTGGCACAACGCCCGAGGCGC 1487844 33 100.0 32 ................................. AATGCTAATAACACGGTTAATTGCTCCGCCCT 1487779 33 100.0 34 ................................. GTCTGCCAACTGCCGCCGGTTAGCGTTGTCGGCG 1487712 33 100.0 35 ................................. TATCTTATGTCTATATTATACATGACACCATGTAT 1487644 33 100.0 33 ................................. GATCAAGACCGATCGAAAGCGATGAAAAAACAA 1487578 33 100.0 34 ................................. TTCCAACTCCGCTAACTGATCCGCATTCATTTCA 1487511 33 100.0 33 ................................. TTGGTGATGAGGGTGACTGTGATCCCTTTAATC 1487445 33 100.0 34 ................................. TAAACGCTGCGTTGAGCTGCGTCTTCGCGTCTGT 1487378 33 100.0 34 ................................. CGAAGGGCAAGCGCTAAAAAAGTATGTGGCAGAA 1487311 33 100.0 33 ................................. TACGATGAATACATCAACGCGGACGAGGGCAAA 1487245 33 97.0 34 .....A........................... TCATATTCTGTTTCGCAATGGGCTTCATCGTTTT 1487178 33 100.0 33 ................................. ATCGTCAACAATGACAAGCCGATCGCTACTTAT 1487112 33 100.0 33 ................................. CTGTGTGGTCGGTGACAGTTTCATAAAGGCGTT 1487046 33 100.0 35 ................................. CCGGCAGAAAACGCCGGAATTATGGCGCATTTTAA 1486978 33 100.0 34 ................................. TGTGAAGAAATTTACAGAGAAAGAATTCCATTTC 1486911 33 97.0 0 ....T............................ | ========== ====== ====== ====== ================================= =============================================================================== ================== 130 33 100.0 34 GTCACGCCTCGCAAGAGGCGTGTGAGTAGAAAT # Left flank : AAAGATTATCCTTGCTTTTTGGCAAAATAGTCAACGGATTAATAAAAGAAAGGGTGATGGTGATGATGGTTTTAATTAGTTATGATGTGGCAACGGCGGATACCAGTGGTAAAACACGCTTGCGCAAGGTAGCAAAAACCTGTCAGGATCATGCACAGCGTGTGCAAAATTCTGTATTTGAAGCGGATTTGGACTATTCGACATTTATGAAATTGAAAGATCAGCTTATTCGGCTCATTGATCAGGAACAGGATAGTTTGAGATTTTATTATCTGGGCAATCATTGGCAAAAGCGGGTAGAACATATTGGCGCAAAAGCGACATATGATCCGGAAGGCGTGATGATTGTTTAACAGGCGAACCCCCGATGATGAGAAAATAGCGGAATGTTCGCCGACTTTTAAGTTCCAAAAATCTAATATTCGGCCACGAATTGAAGCAATTAAAAACAAAAAAACAATATATAGCAATATATAGCTAAAGAATCACAATATGTTGCC # Right flank : GAAAATTGGGGCTTAACATGGGCCTCGGTGACGGCGGTCTGCCCGGGACCGGTGCGCACCGCCTTCTTTAAAACGGCAGAGAAGGTACACCGGCGGGCGGCGTTTAAAAATCGCTTTATGGCCGATCCCGAGAAGGTGGCCGCCAAGGCCTACCGCGACGCGATGGCCGGCCGGGCGGTGTCTGTCTATGGGACGGCGATAAAGTTGCTGCGCCTGATGACGAAGCTGCTGCCGATGCGGCTGTTGGTGTGGATGCAGAAGTGAAAAAAGAGTTTTTGCCGATAGTTTACCCGGAATCATTTGCTGGGAGATCAGTCGATTGCGATTAGGCAAACGCTAAAAGACAACGGAAAAGGCTTGCGATTCAGGAATTCTGTAAAATAAGTAATCCCCCCTTGCAATGCAGTGAGAAACGTGCTATCGTATCAAAAAAAGTTAGCATGGTCTAAATTAAAGCATTGTGATATTTGAAAGGGGGAAGATAACATGGATGCTCGTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTCGCAAGAGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 2223880-2224648 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622359.1 Pseudoramibacter alactolyticus ATCC 23263 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 2223880 36 100.0 31 .................................... TTCCTGGATCATGATGCACAGCGGATCGATG 2223947 36 100.0 30 .................................... GGCGCACCATGATACAAAAATATCACACCA 2224013 36 100.0 31 .................................... AAAATCATGGCTAAGTATAATTCATACACGC 2224080 36 100.0 30 .................................... AAATGAGAACCGTGGTAAACATAGACTCCG 2224146 36 100.0 30 .................................... TTTTCAGCGTCGCTGATATCCTCATTGGGC 2224212 36 100.0 31 .................................... AAAAGGTCTTTGAAATCATCAATAAGACATG 2224279 36 100.0 30 .................................... CCACATAACGGGCCTTATCTTCCGGCAACA 2224345 36 100.0 30 .................................... GTACATGCGCCACGAAGAAGTGAAACAAGA 2224411 36 100.0 32 .................................... CAAGGGATCCGCGGCTGCGGCGTGCCCCGGGC 2224479 36 100.0 32 .................................... CCTGACACCCACAAGCGAGCTTGAAAGCTTCA 2224547 36 100.0 30 .................................... GATGGCCAGTGTTTTAACCGGCACCTGCCG 2224613 36 88.9 0 .......................G.....T...GA. | ========== ====== ====== ====== ==================================== ================================ ================== 12 36 99.1 31 GTTTGAGAACCTTGTTATTTACGATACTTCTTTAGC # Left flank : ATGAAGGGGATCTATGCCGCATTAGAAGAGGTAGCTCAAGAAGAAGTTGAAGCCAAAGGTGAAATTACAACTGCGATTATTTCTGTATTGGAGCGGGTCACCAGCCGTGCGGCTTATGATAATCTGACATTTGATTTTGATTTTGAATGGGAAAATTTATTTAAATTTTTTCATCTCCGCATTGAGGAACAATCGTTATCTTTAGAAGAGAAACTTGCAGAGTATTTTAAAATCCTTTCTTTAGTCCTTCGGAAGCCGATCTTATGTTTGCTTCATGCACATATCTATTTTTCAGAAAAGCAAATCCGTGAATTGATTCAACTGAGCAAATATCAAAAACTTCAGTTGTTATTTATTGAAGCACGGGAACCTAAAAAAATTCCGGATGAAGATGAAGATATTTATATCTTAGATCAGGATCGGTGTGTTATTATTAAATAAAGAGATCGTGAATAAGCTGTTACCTGCAGTCATAAGGTTCGGTGAGAATCGATTTTGAG # Right flank : CATAAGAAATATTTATTTGATGATATGTTGTATTGTACTTGTAAAACGGATCAAAACCCGCCCTGCGAAAAAATTTAAATTTTGCTTGATGCCCGCTCGATTCTTTGCTATAATCGTTCGTGTTCAAGCGGGTATAGCTCAGTGGTAGAGCCCTGGCTTCCCAAGCCAGTCGCGAGAGTTCGATTCTCTTTACCCGCTCCATTTTCTGAAATTTGAAACCCGCATTTGTTGTAAGGCTTTGCGGGTTTTTAATTTATACAGATTGTGCATTTGCTGGCAATAAATATAAATTATTTTAAAAAGATAATTTTTATCATTATTTACAATCTTTTTTTCAAATAATTTGTTTTTAACTTCCGAGTTCAATAAAAAATCAGGATCATGTCTCAAATCCCGAAGTATAATCTTTAACAAAGGGAGCCTTAAAGGGCTTTTTTATGTGTAGTGCTATCTTATTATTTTATCATCATCTGCGTGACATACGAAAAAATTATCGTTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAACCTTGTTATTTACGATACTTCTTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //