Array 1 22612-23966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABALM010000018.1 Neisseria meningitidis strain 108508 NODE_18_length_40727_cov_35.795967, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22612 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 22678 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 22744 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 22810 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22876 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 22942 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23008 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23074 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23140 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23206 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23272 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23338 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23404 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23470 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23536 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23601 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23667 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23733 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23799 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23865 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23931 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //