Array 1 65134-65753 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHN01000010.1 Telmatospirillum sp. J64-1 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 65134 31 100.0 34 ............................... GACGTCCATCTACGGGCAGAACTATGCTCAGGAG 65199 31 100.0 35 ............................... TGGTTCCATCAGCGCGGCCTATGCCCAAGCCGCAG 65265 31 100.0 35 ............................... GAGGATGCGGTGGCCGCCGCCGAGAAGGCATTCCA 65331 31 100.0 33 ............................... TATCCCTCTCGATCCTGGTCCGCTCAGCGCTTG 65395 31 100.0 34 ............................... ATAATCGACGCCCTCCCGGAAACCGTACTTGGCG 65460 31 100.0 36 ............................... CGCCCTGCAGTGGACGGGGCCGGAGAGATGGCCGTG 65527 31 100.0 34 ............................... GATTCCCATGACGCCAATCTGGCCGAGGCCTTGT 65592 31 100.0 35 ............................... AACGAGGCCATCGACTTCCTGCGCCTGAAGGTCCG 65658 31 100.0 34 ............................... TACCTCATGCACCGCGAATGGCAGGACAACCCTG 65723 31 90.3 0 ...............AG.......G...... | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 99.0 35 GTCGCTCCCTCACGGGAGCGTGGATTGAAAC # Left flank : CATCCGTCCGCCGGACGACCGCATGATGGAGGCCCTGCTGGTCAAGCTCTTCGCCGATCGTCAGCTCAAGGTCGGACAGGATGTGGTGGCCTATCTCGCTACCCGCATGGAACGCTCCTTCGCCGCCGCGCGCGCCCTGGTCGCCCATGTCGATTCCGCCGCCCTGGCCGCCCATCGTGCGGTGACGGTGCCCTTCCTGCGCGAATTGCTCGACCGCGAGGAAGACGAACGGCAGGCCCGTTTGCCCTGGTGCTGAAGGGGCGGGCCGCCGCCCGCACCCGCTCGGGGCCTGGAGGCCCCGAACCCCCAGAAGATTCCTCCTGCGCGAACCGCAAGCTCCCATGGATTCCCGGGGCCATTCGCGCTTCGCCCTTTTTCCGGAAATCCTGGCTTTTCCAGGTTCAGGAAAGCGGTTCCTCCGACAGACTGCGATCCGCATGGGGACGTCTGCGGGAAAGGCGCTGTTTTCTTAGTGGAACCAAGAAGATAAGCTGTGGGGA # Right flank : CGGGCACCCAGGCCAGTGATAGATCTTGCGGCCTGATCGCCCCCTCTCATGGGGTTCGGGGCCGGGCGGCAGCCCGCCGTCTCCCGCCTTTATTCCAGGTCCCGTGGCCGCACGAAGGAGGCTAGCCTGGCGCAGCCGGGTTTCACGTCGCGCCAGGTGGCAATCGGTAGTTCCAGCACGGACAGGGCGCCGCTGGGATATTTCTCGCGCAGGGTGGCAAGCGCGGTCTTGTCGCTGTCGCGGGAATTGGCGAGGCTGGAGGCCAGACGCTCGATGCCGGGATTGTGGCCGATGAGCATGACGGAATCCACGGCCTGGGGCAGGTCGCTCAGGCGGTCGAGCAGGTCGCTCCAGGCGGCTTCGTAGAGTCTGTCCTCGATCAGGATTTCCGTCTCGGGCAGCACGGTCTTCACGGCGGCCAGGGTCTCGCGGGTGCGTTGCGCGCCCGAGCACAGGATCAGGGCCGGGCGGATCCGGTTGCGGTCGATGTATCGCGCCAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 225708-226120 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHN01000001.1 Telmatospirillum sp. J64-1 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 225708 28 100.0 36 ............................ CATGGCGCCGAGCGTGGCGGCGTGCGCCCGGTGCAT 225772 28 100.0 35 ............................ ACCGCACGATCGTTCGGCGTGCCACCGCCGAGTCG 225835 28 100.0 36 ............................ GAACCGCTCCAAGCCATCGCGGTGCATCACCTCCTG 225899 28 100.0 36 ............................ CTGGGCGTCGGTCAGGTCAGGGCGGTAGGCCAGCAG 225963 28 100.0 37 ............................ CCAAGCGGTGAGCAAGTCCAACGTCATCCCGAAGCAA 226028 28 100.0 37 ............................ GGCCGATTAGAGACCATCACAGTCTCTTCCTGAGAGC 226093 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 7 28 100.0 36 CTTCTAACCCCTCATAGGGGACGTAAAC # Left flank : AGATCGAGACCTCCGCCGCCCTGAACAATCTGGAAGATATCGTCACTGTCGAAGGCATCGACGGCATCTTCGTCGGCCCATCGGACCTTGCGGCCAATCTGGGGCATATCGGCAATCCCGGCCATCCCGACGTCCAGGACGCCATCGCCCAGGCCCTGGCGATCTGCCAGGAAGCCGCAATCCCCGCCGGTATCCTGGCGCCGGTGGAAAGCCAGGCGCGGAAATGGCTGGACGCCGGATACACCTTCGTCGCCGTCGGCAGCGACGTCAGCCTCCTCGCCCGAGGCGCGGACGCCCTGGCCTTGCAATACAAGAAGGCGTTCGAGGTGTCGTGATGAAGGTCCCCAAAGCTAGGGGCGGGGGAAGTTCGGAAATGGCAGCCGCAAGCACCCGTTCCCCGCAGTCGCCGGTACCTTTCTGTCAGGTCGAGAGGGTTTTCGTTGATCTCTCATAGAGGACGTACTGACCTGATCCTCCTTCGCCAGGGCGCTCTTGCCTGT # Right flank : CCCTGGCTTTGGCTCGATTTTTCCGCTTCCGCCTTTTGCGGGCTGGTGGAAAAGGGGGCTGAACGCCAGGAAAAGGATGTTCGCTCCCCGGGGAATTTTGCAAGATATCTCATCGAACATCGTTCTGCTTGCTCTCCGGGACCATATCGGGCCGAGCTTATCCGGCTTCCTGCTGGCTGGCAATCTGGTCGCATAGGCTTTGCGTCGTCTCGTCGGCGGGCAGCCAGCGGCGGGGGCCGAGGGAGGTTTGCTCGGTCATCCGGCGCACGACATAGCGTGACAGGGCCTTGCGGCACCGGCATTCGCGGATGCCGTCCTTTGTCAGCTCCCATTCCTGGGCCAGCGCCGCGCGCAGGGCGGCGGGCAGGGCCGGGTTCACCTTGAAGCGCAGCAGGATGAATGCCGCCCAGTCCGGGTCGTGGGGATAGGTGAAGCATTCGGACGCAGGCTCCGTCTCGGTGATCCGCGAGAGGACGAAATCCTTGTGTTTCCGCGCAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAACCCCTCATAGGGGACGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 237943-236365 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBHN01000001.1 Telmatospirillum sp. J64-1 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 237942 27 89.3 37 ...-..T........A............ CCTCGGTGGCGGGCGCCGCCTCGGCCAGCACCGACAT T [237936] 237877 28 100.0 37 ............................ CTTCGCTCTGACCGGCGGCCAGGATGAGGAAGACGCC 237812 28 100.0 37 ............................ CGCCGGCCGGACGCACCATCACTGCCGGCAACGGCCT 237747 28 100.0 37 ............................ CAGTGGCGCGGGTGATTGCGCCGCTGCTCTGGAACGC 237682 28 100.0 37 ............................ CCCCGCGAATGTGCAGGGTTTCCGCGTCAATGTGATT 237617 28 100.0 36 ............................ GCTTCGAAACATCACGGTCATCCCCTGCGAACTTGT 237553 28 100.0 38 ............................ TTGTAACGCAGACCGATTTCCGCCTGACTGGAGAGCAT 237487 28 100.0 36 ............................ CAGAACATCACCGCCCGCCAGTTCGCCAGCATCGAA 237423 28 100.0 35 ............................ TCGCGGTCATAGACGGCAGCCTCATCATCAAACGG 237360 28 100.0 37 ............................ TATCATTGATGCTGGCAGTCCCGGCATAGAACAGCCA 237295 28 100.0 37 ............................ GTTCGGCGCGGGAGTGAAGCACGCCACGCACATCAGA 237230 28 100.0 37 ............................ TGATCGTTCGCGCCGAAGCCGCTCCGGACTGGCTGAC 237165 28 96.4 36 ....C....................... GCCCGGGCCGCGTGGCTCAAACATGGAAAGTTGCAC 237101 28 100.0 36 ............................ ATCACCCTGGACGAAGCCAAAGCCCATCTCCGCGTC 237037 28 100.0 37 ............................ TGGTGCTGACCGAGGCCGCGACAGGGCTTTCGTTACC 236972 28 100.0 35 ............................ GACGAACCTCGTAGCCGCTGGGCGTCTTCAACCCT 236909 28 100.0 37 ............................ TGGCAGTCTGGGAAAGGGAGGTTTTCGGCTTCATGAA 236844 28 100.0 37 ............................ TCCTCGCCCATTCGGCGAGGTCCTGATACAGCTTGGT 236779 28 100.0 36 ............................ AAACATGCTGCTGCCACCATTCTCCAGAGCCTCAAT 236715 28 100.0 36 ............................ GGGCTCATACTGGCTGAGATCGACGCCGATAACTTC 236651 28 100.0 37 ............................ TTATGCGGAGCGTAACGAGTTCGACGGCGTTGGCCTT 236586 28 100.0 36 ............................ CAAAGGGGAGGATTTGCGGCGGGGCTTATTGTTCAA 236522 28 100.0 37 ............................ AAGGCTCGGCTTCGGTAGTCGCGACCATGATACCGGT 236457 28 100.0 37 ............................ ATGGTAAGCCGAGCAGCCTGTGGCTGGCCTGGGGGAA 236392 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 25 28 99.4 37 CTTCTAACCCCTCATGGGGAACGTAAAC # Left flank : GACGGCTATCGGAACACGCTGGAAAGCTATTCGCAGCGCCTGCTGCCGCTGATCGACTGGGAACCGACCGAGCAGTTCAACCTGCGCGTCCTGAACGACACGGGGGATTTCTACCGCTTCTTCGACGCCACCCCCCATGCCGAATTCCTCTATGCCTGCGTCGAACGGACGATCGAGCAGGACCTGCCGAGCGAAACCGCCTTCCTGCGCCGCTACGACGCATTCCGCCGCCGCGTCGAAACCCTCGTCGACATGCCGGACCGCAGCCTCGACCTGCTGTTCCGCTTCCTGAACCAGAACGATGGCAAACTCTCGCACCGCGCCCGCGACCGCGAATTCAAGGACCTGACCGACCAGGAGGCGCAGCGGATCGAAGCGATCTACACCGAGACGTTCGGCGACGGCTGAACAAGACGCTCACGCCGCAGCCGCTGTCATACGTCGCCGGGACGTCCATCCCGCAGGATAGAACTGTCGACCTCTCCCTTACCAAGGGAGTG # Right flank : CCTGCCCTCACAAAGATTTTTTGCTCCTCCCCCTGACGACGACGGCGGAAAATGGGCTGGAACGCCAGGAAAGCGATGTTCGATCCCCGGGGAGTTTTGCAGGATATGCCATCGAACATCGCCCCTTTGCCGTCTACAGAATCCGGGAATCGCGTTTATGCCGGTCATCGGCCTCCTTGCTGGGCAGGCCGGTGGAATGGCCGGTCTTGGACCAGAGGCTGATATCGATGTTATGCCTGTTCTCGACCAGGAACTCCAGCACCCGGTCACCCTCCACGACCAGCTTGTTCATCTCCCGCCGCAGCTTGTCGAGCTGGGATTTGGTGATGTCGCCGAAGAAGACCGAGAATTGCTCGTGCCCCAGATACTTGATCAGCAGTTTCCGGTATTTCTGCGTCCGCTTCGCATTGACGTCATAGGTGACGATGACGAACATCTTCAGCTCCCCCGCCGGAAGGCGGCATAATCCTCGATCCCCAGGACATGCCGTTGCAGTTTGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAACCCCTCATGGGGAACGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //