Array 1 185837-187207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGWG010000002.1 Escherichia coli strain PLATE2_H8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185837 29 96.6 32 .A........................... TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 185898 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 185959 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 186020 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 186081 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 186142 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 186203 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 186264 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 186325 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 186386 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 186447 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 186508 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 186569 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 186630 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 186691 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 186752 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 186813 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 186874 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 186935 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 186996 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 187057 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 187118 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 187179 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212907-214217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGWG010000002.1 Escherichia coli strain PLATE2_H8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212907 29 96.6 32 ............................T TTCTACCCTGTTCGGCTACCAGCAGCGACTGC 212968 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 213029 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 213091 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 213152 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 213213 29 96.6 32 .....T....................... TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 213274 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 213335 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 213396 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 213457 29 100.0 32 ............................. TTTTCCACCAGTCGCAGTGGGAGCAAAAACTG 213518 29 100.0 32 ............................. CGCTGCTGTTCAGCGGCAATCAGATCAGAACC 213579 29 100.0 32 ............................. GGAATCCACCGCGTCGGCTATGGCCTGATAGT 213640 29 100.0 32 ............................. ATTAATAGTTTTTTCATTTGTTGCCCTTTAGA 213701 29 100.0 32 ............................. CCGGTGATTGCCTGCCCGTCGTGATACTGCGA 213762 29 100.0 32 ............................. ATTCTTACCCCGGAAGCTGAAAAGCTTATTAA 213823 29 100.0 32 ............................. ACCGCCTATTACAACGAAATCGATCCATTCGC 213884 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 213945 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 214006 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 214067 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 214128 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 214189 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //