Array 1 46983-45892 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FIFQ01000004.1 Streptococcus suis strain LSS13, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     46982	    32	 100.0	    34	................................	TCCAAAAGAGGATGAAACGCATGGCAATGCACGT  	
     46916	    32	 100.0	    34	................................	CGCATCATAGGCTCAATAACCACCTCAATCAACT  	
     46850	    32	 100.0	    33	................................	ATCAAATTTTTGAAGCAATTGCCCCTTAATATC   	
     46785	    32	 100.0	    36	................................	TCACTTTGAAGATAAATCACATCATCACTAGCAAAC	
     46717	    32	 100.0	    33	................................	CAGCCATGTGATAAGGGATTTTCCCAGCCTTCA   	
     46652	    32	 100.0	    34	................................	TCCCAAATTTGGGAAAAAGTACGGGAGGTCGCCA  	
     46586	    32	 100.0	    35	................................	TTTGAGATTGCTAGGTTCGCATCTATTCTCAGACC 	
     46519	    32	 100.0	    33	................................	TATTGGACCAAGGAATGGCGAATCATTCGAAAG   	
     46454	    32	 100.0	    33	................................	AAAAGCCAGGTTTATTAAAAAATCATTTGACAT   	
     46389	    32	 100.0	    35	................................	AGACAAGGCCACGCGCTCGCCTACCGCGTCGGCTG 	
     46322	    32	 100.0	    35	................................	AAGTATGGACGAGCAAATGCCACCTGGGTTCCGCG 	
     46255	    32	 100.0	    33	................................	CGAGAGAACTTGCGGTGACAAACAAGCTTATAC   	
     46190	    32	 100.0	    36	................................	ATCTTTTTCGTTGGCTAACATTCTAGCCTTCAAAGC	
     46122	    32	 100.0	    34	................................	GATTTGAGCTTTTGAAAGTCATCTTGACCATAAA  	
     46056	    32	 100.0	    36	................................	CCCTCGAAGAATGTTTATACGTCTCAGAAGCAACTC	
     45988	    32	 100.0	    33	................................	AGGGCATTGAGCTGTTCTTGGGTCAATGCTTGG   	
     45923	    32	  71.9	     0	.......T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        17	    32	  98.3	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGACAGTTATCCTCCCTTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAATAAAGAATAAGTTGCTGGAAATCATTGATAAGGAACAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACAAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATAAAATGCGAGGAGATTCGCGTGAAAAACATATGAAAAACAGTGAAAATAGAGTGAATTTATGATATATTCCATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT
# Right flank :  TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATAACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAGTATGTGGACCTGACGGTAGATGGGGCTGACGAGGTGGATGGTGCCTTCAATGGTATAAAGGGTGGCGGTGCTGCACTGCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT

# Questionable array : NO	 Score: 9.17
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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