Array 1 3984903-3981830 **** Predicted by CRISPRDetect 2.4 *** >NC_009997.1 Shewanella baltica OS195, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3984902 28 100.0 32 ............................ AACAAGTCAACAGTCATGGCCGAACCAATATT 3984842 28 100.0 32 ............................ TTTAACTCTAGAAACTCTTCAGTCACAGTTTC 3984782 28 100.0 32 ............................ AACGATATGGCTGGGGTAGACCGTGAAGAACT 3984722 28 100.0 32 ............................ AGTACGTCACAGAGCAGATAAATAAGGGTGAA 3984662 28 100.0 32 ............................ TTACTGATAGTGAACTGGCGGCTAGTCTCACT 3984602 28 100.0 32 ............................ TGCGACGTTCTTGTCCAATAACTGCGCATGAC 3984542 28 100.0 32 ............................ TAACGGACAAGGTATCAGGCGTTGGTCTGTAA 3984482 28 100.0 32 ............................ ATCAAAGCAGGAGAGTCACGCACCCAAACACG 3984422 28 100.0 32 ............................ ACTCAACATTATAAGCAGTTTCAAATGAAATC 3984362 28 100.0 32 ............................ AGTTAACCCATGCCCCAGTCTGGGAGTATTGC 3984302 28 100.0 32 ............................ AATATCCAAGCAGTGATAGGTTAGAAATAAAT 3984242 28 100.0 32 ............................ TTTTTCATTAACCTTTAACTCTAGAAACTCTT 3984182 28 100.0 32 ............................ TCTAAGTATTGTTGTTACGTCTACTGCACCAT 3984122 28 100.0 32 ............................ ACAAGATGAAGCCCCATGAATTTTCTAAGGTG 3984062 28 100.0 32 ............................ GTTTGCAGAGTCCGCTGAGAAAGTCCCAACTG 3984002 28 100.0 32 ............................ GTTGTTGTTGATATACCCCTTAACTGTATTCC 3983942 28 100.0 32 ............................ AGTAATAAAAAAAGTGACCAACAAGTCAACAG 3983882 28 100.0 32 ............................ ACTTGATAGCCGCTGATATTTCATCGACATTA 3983822 28 100.0 32 ............................ GGTGATAAAAGAGTTTCATTTATTTCTAACCT 3983762 28 100.0 32 ............................ AGTATTACCACGAACCGACAAAAACGATTTAC 3983702 28 100.0 32 ............................ TATCCCGCATGGAGTCAAGCCTTGCGACCCTC 3983642 28 100.0 32 ............................ TGAGCTGAATTATAAGAAATGGCCGGTGAATT 3983582 28 100.0 32 ............................ TCGTCAATATCACTTCCTGACTGTATGGCTTG 3983522 28 100.0 32 ............................ AAAACTGCTGGTATAAAATGTATAACCGTTTA 3983462 28 100.0 32 ............................ CTTGATAACGCACAATCACCCTTGTATTGCGC 3983402 28 100.0 32 ............................ AGTGTGGTAATATGTGGATTATTTGGAGGAGT 3983342 28 100.0 32 ............................ AGTACGTCACAGAGCAGATAAATAAGGGCGAA 3983282 28 100.0 32 ............................ ATTTAGTGCGAGAAAATACGTGGGGTCGCTGT 3983222 28 100.0 32 ............................ GCTGACGGACGAAAAACGCGATAAGCTGGTTC 3983162 28 100.0 32 ............................ GATCATGGCGGTCGTTACTTCCGCCTCAATGG 3983102 28 100.0 32 ............................ CGCATAATTATGCGTTATTTTGTCATGATAGC 3983042 28 100.0 32 ............................ TAACGGACAAGGTATCAGGCGTTGGTCTGTAA 3982982 28 100.0 32 ............................ ATGGCCACACACCATGGCCACGCACCATGGCC 3982922 28 100.0 32 ............................ TACGTTTGGCACATAATGCACCGCCCAAATCG 3982862 28 100.0 32 ............................ TTGTATATAGTGGAGCAGGATATAGGGTATAA 3982802 28 100.0 32 ............................ TAAAAAACAGGACAACGACAATGGCGAGAAAA 3982742 28 100.0 32 ............................ ACTTTAAAACCGTCGCCAATAAACCAGTCTTT 3982682 28 100.0 32 ............................ AGCTGGCAAAAACAGTTTGAAGTTCGGCGCAA 3982622 28 100.0 32 ............................ GGCGGCGCTTTCGAGTGCCTCGCACCTACCAT 3982562 28 100.0 32 ............................ CATTGGCGCGGCCAATGGTTTGGCGTTGGATC 3982502 28 100.0 32 ............................ AATAGGTCATGCCACGGTAGATAGACGCTAAA 3982442 28 100.0 32 ............................ TGAATAGCCGCAGTGTTTTGGGTGACGCCTTG 3982382 28 100.0 32 ............................ AGACGGGGTGCGGGTGTTAGACGCGGGGGGAG 3982322 28 100.0 32 ............................ GTAATGGCCATGCATTGAAAGATATTCCAAAA 3982262 28 100.0 32 ............................ TAGATGGTCAGGATGGTGTTGATGGTGTTGGC 3982202 28 100.0 32 ............................ GTTATCAAATGGCGCATAACTCAGCCTCTGCC 3982142 28 100.0 32 ............................ CTGAGAGATTTTTGCAGGTGAAGCCTTAAGCT 3982082 28 100.0 32 ............................ TTTAGTCCACCTCCTTGAATTTGATTTTAATG 3982022 28 100.0 32 ............................ GCGCAAGAAGTTAATTATAGGAATGCTAGTTT 3981962 28 100.0 32 ............................ TCGTTAAAATCTTCAAACGGATCGAACGCTTC 3981902 28 89.3 17 ..................A...C...G. TTCATCAGTATGCGATT Deletion [3981858] 3981857 28 71.4 0 .....AT...AT......T.T.C.T... | ========== ====== ====== ====== ============================ ================================ ================== 52 28 99.2 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : GGAAGATTTAAAGGTAAGCAATTGGCTGCGTCATTTTACCGACTACTTGCATATCAGTAGTATCCGTCCCGTGCCCGAAAAAATAGAAGTTTATGTAGCTTATTCACGCCCAGCAATCCGTGCGAATAAAGCGCGGGAAATCGCTCGAAGAATGAAGCGTCATAATGAAACGTTAGAGCAAGCTACAGCGCATTTTGAAGGTTTTAAACCTAAAAAGACCAAAGCGCCCTTCGTTTATATGCAAAGTTACACTAAGGATTCGCGCTTTCCTTTATTTATTCAACAAACACATAGTGCTGTAGTAAAGGAGGGAAGTGTTTCGTTTGACAGTTATGGATTATCAAGCAGAGGCTATTTACCCAAGTTTTGACCTTATAATTTATGCTCTTTAACAAATCAAATAGAAACAGTGAGTTACTGCAGTGTGTTTTTCGTAAGGTAAAATAATGTTTTTTAGCCTAACGAATTGTAGTTACTCACTTTTAAACTAGTAATTTATT # Right flank : ATCTATGGCAAGTTGATTTTTGAGCGCGATTTTAATTGAGTGATTCTGCTATACTCCGCGCCAAGATATCAAATGACAAATCATTATTTTAGTTTTGTGTACAAGCGTGTGTACAAACTGATTGAACAACGAGTAAGACTTAATAAATATGTCTATAGAAATCAATAAGCGACGCACTTTTGCTATTATATCGCACCCCGACGCGGGTAAAACAACCATTACCGAAAAAGTGCTGTTATTCGGAAACGCTTTGCAAAAAGCGGGAACGGTTAAAGGCAAAAAATCGGGTCAGCATGCTAAGTCTGACTGGATGGAAATGGAGAAGGACCGTGGTATTTCTATTACTACGTCTGTGATGCAGTTCCCCTATGGTGGCGCCCTCGTTAACCTACTCGACACGCCTGGTCACGAAGACTTCTCTGAAGATACCTATCGTACTCTGACCGCTGTTGACTCCTGTCTGATGGTCATCGACTCCGCTAAGGGTGTTGAAGAGCGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //