Array 1 1300493-1302966 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014722.1 Dehalococcoides sp. UCH007 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1300493 29 100.0 32 ............................. GACTAAGCCTTAAAGACAAGGCGCTATATGTA 1300554 29 100.0 32 ............................. CAGTACTCTCGGTAAATGTCGGTACGTCATAG 1300615 29 100.0 32 ............................. CAACAGATGGAGTTAGATTTCATCAAGTTGAT 1300676 29 100.0 32 ............................. GGCATATCCGGGGGCAGAGGACAAATGAACTC 1300737 29 100.0 32 ............................. AGCAGGTGGAGTTTGCTTCTCAAGTAAATGCC 1300798 29 100.0 32 ............................. CAACCTAAGTGCGGATACAGCAAGCATGAGTA 1300859 29 100.0 32 ............................. GTTTGCATCCGTTGCCGGTTTGGCATCCTGGT 1300920 29 100.0 32 ............................. CACTAACAAAAAGCCAATAGAAGCCGTACTAG 1300981 29 100.0 32 ............................. TCTGAGTTCATGTTTCAGGTAATGATGAACTC 1301042 29 100.0 32 ............................. AGGTGAATATGGCTAATCCTGAATACGGCAAT 1301103 29 100.0 31 ............................. AAACCACTCCATTTCACCAGTGGCGCTAGGA 1301163 29 100.0 32 ............................. GAATATTTTACCCCACTTGACAATCACTAATA 1301224 29 100.0 33 ............................. ACTGCCTGAGAGAGGCTATGCAGCTGCTCTCCC 1301286 29 100.0 33 ............................. CCCATCCTATACAGACAGTAGGGTGGAAAGTGG 1301348 29 100.0 32 ............................. CGATGGGACGCCCAGCATGATATCCGAAAGCC 1301409 29 100.0 33 ............................. AAGGTCAAGACGCAGAAGATACTAAAGCCTTTT 1301471 29 100.0 32 ............................. TAAAGAGCTGATAGAGCAGATAGCCAAAGAGA 1301532 29 100.0 32 ............................. CGATGCGTTTATAGCTATTTTATGGCTTTTTG 1301593 29 100.0 32 ............................. TTTGCACCCATGTAGTTACACCACCGGTCAAC 1301654 29 96.6 32 ............................A AAGGCTGAAATAATGAATAATGTAAAGACTGA 1301715 29 100.0 32 ............................. CAAGAAAGAAATGCAATGCGGACAACAGGAAA 1301776 29 100.0 33 ............................. TAATATCATAGCCAACAATCTTTTTAAGCTCAG 1301838 29 100.0 32 ............................. ACTAATTCCCCAGCCGAACTTGACCGAGTATG 1301899 29 100.0 32 ............................. GGGGATGAGAACAGCGTGCTGGATGTCAGAAC 1301960 29 100.0 32 ............................. TTATGCTGGTGCTGTCTGACTTCCAAGCCAGA 1302021 29 100.0 32 ............................. TTCTACAGCCAGAGCCTTAAGTGAACGGCTGA 1302082 29 100.0 32 ............................. AGACATCATCAGGGAGCGGTCAATGGCGGGGA 1302143 29 100.0 32 ............................. CTGAATGCCCCTATCAATACAGTAAAGGTTGA 1302204 29 100.0 32 ............................. TAGGCTGTAATTGGCGACCCCAGGGCGTAGTA 1302265 29 100.0 32 ............................. GTGGGTGATACGACTATAGAAATACCAAAGGA 1302326 29 100.0 32 ............................. CGGTAGCCCATACTTCAATTGTATCTAGTATA 1302387 29 100.0 33 ............................. CACTGGTGCTTCTCTTCCAGTGAGCAAGGATGA 1302449 29 100.0 33 ............................. TATAGCTGTTGTTGTAGTCCCTTGTACAAAGTC 1302511 29 100.0 32 ............................. GCTGATGGGTCTATCAAGGCTGGTGGATATAT 1302572 29 100.0 32 ............................. CAGTGTCTTACATGTGATTGATAGCTGTGCTA 1302633 29 96.6 32 .......................T..... CAGTCAGCTACCTAGTGTCTTATTACGTGGGC 1302694 29 100.0 32 ............................. GCAAACTGGCACGATATACCCAAACATCAAAT 1302755 29 100.0 33 ............................. CATAAGTAACTCCACCAGTTAGTGAATATACAT 1302817 29 100.0 31 ............................. GTATATATGCCAAATATTGTACCGGCGGAAA 1302877 29 100.0 32 ............................. TATGTAGCAAGCATGGCTGGCTTGGAGTTATG 1302938 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.7 32 GTATTCCCCACGCGTGTGGGGGTGAACCG # Left flank : CTATCCCTGTGGCATTCAAAATTGCGGCAGCCAATCCAGAAGACCTTGAACGTCAGGTAAGAATGGAATGCCGGGAAGCTTTCTATAAATACAAACTTCTTGAAAGGTTGCTGCCGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAGGTCCCGACGAGTTTGAGGGGCGCATTGTCACGCTGGCTGTTGGAACCGAAGACGGGAGTTTTTCTTGGGAACCCGAGCGCCAGGGTGAGGGATGAACTCTGGGACAAGGCGATAAAGAAAACAAAAGCAAGCGGTGTTATCCTACAAATTTGGACAGACCAGAACCCTCAGGGGTTTTCTTCCCGCCAATATGGTGAGAGGGAACGAATGTTTATTGATTTTGAGGGGCTATCACTGGTAAAAATAGACAAGAATATTAGCACTACCAAAACGCAAAATTCTGATACTACAAACATCTAATCAGCTATGACCCATTTTCTGCTTAGCTTTATTCTTTTAGG # Right flank : ATTCGCTCTCCAATCTTTAATAAAGCTAATGACATAGTTTGGCCTTTCCGGGCAAGCCACGTGAACCGTTAATAGCGAATAGCAGTTAAGAATGATATTGAATATAATCTTATAATTGCCAAGCATATCTACTTTCAGGCCTCTTAGTAGAACTGACAAATCTCAGCCCCTATAAACAACCAACACCAAGTGGCAGACCCTTAGTTGACATACCTTAATCAGGGGGGTATCATTAAGGAAATGAGCATATGCTCATTTCCTTAACTCTGACTTTGCCGGAATTAGATTGAAACTAAGTTTTAAGAGGCTAGTAATAAGTTGCTATCAGTAAATAAAGAACTTTGCAATGGCTGCGGCGTTTGCCAGAAACTCTGCCCTCAAGAAGCCATAAACATTCAAGATGGAATAGCCAATATATATCAGGATATATGCACCCAGTGTAATTTATGCCTGAAGAAATGTCCCAAAGGTGCAATCTCAGAACAAACAAACACTAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //