Array 1 50-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPT01000144.1 Salmonella enterica subsp. enterica serovar Heidelberg strain PRK715 HEIDELBERG_S19_trimmed_contig_154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 50 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 117 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 178 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 239 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 300 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 361 29 100.0 35 ............................. CCGCTGACGCACTGGAGTAAACATGATGCGTGGTG 425 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 486 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCAGTGAGATGCCGCCAATTTGTCAAATAAAATG # Right flank : CGTCACTACCGACACCGAGACCGAGACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1951 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPT01000129.1 Salmonella enterica subsp. enterica serovar Heidelberg strain PRK715 HEIDELBERG_S19_trimmed_contig_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 111 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 172 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 233 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 294 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 355 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 416 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 477 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 538 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 599 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 660 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 721 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 782 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 843 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 904 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 965 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1026 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1087 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1148 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1209 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1270 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1331 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1392 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1495 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1556 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1617 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1678 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1739 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1800 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1861 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1922 29 96.6 0 A............................ | A [1948] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGGCAGCGGTTGAGTAACTCCTCGTCCACGTCGAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //