Array 1 31807-31412 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQSP01000024.1 Bifidobacterium jacchi strain MRM 9.3 sequence024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 31806 36 100.0 28 .................................... ATATTCGCATAATAGGAATCACCAGCCA 31742 36 100.0 28 .................................... CCGGGTTGGCGGGGTCATTGGACAGGTT 31678 36 100.0 28 .................................... GATGCCATGAGCGCGATAGGCCGGGCGA 31614 36 97.2 3 ...................................N NNN Deletion [31576] 31575 36 91.7 28 NNN................................. TGTTCGCGGGTATGCGGCCATCCCTCAC 31511 36 100.0 28 .................................... CTCTCCAACACGTCCATGGGATTCATAC 31447 36 88.9 0 ...............................GAT.G | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.8 24 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAATGGTTCTGGGCTGACGATACCGAGTTCACTGAACGATTTTGCACAGCAATTCGGTTTGTACTGTGAGGGCAAGGTAGATCGTTTGGCAGTGCCGGAATATGTGGGCCAGTTATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGTTTGGTCATGTTTGATTTGCCAGTGAAAACGAAACGGCAACGACATGCTGCGACTGTGTTCAGAAACATGTTGCTCGACATGGGGTACGGAATGGTGCAGTATTCCGTGTATGTGAGATATACGCCTACACAAGCCGGCAATAGGGCGACGGTGAAAATGATAAAAGACAATTTGCCTGCCGATGGATTGGTGCGAATCCTGCATATCAGTGATCATCAATGGTCTACTGCGGCTCGTTTTTCTTCAGGGAAGCGCGAATCGCGAGAGGAGACACCGGACTTCTTGACTCTTTTTTGATCGTGAAACAGCGTAGGACCGTTGGAAAATGGCCCTTCTTGATAAGCTAT # Right flank : CGGCGACGTGTATTTCCTTTATGACGATCCGGTGATCGGCCCCATCCTGCCGCTGCTGTTCATCACCATTCCCGTGAGGGACGCGGACGGGACGCTCGGCCGGGACCGGATCGCCTGCTATCCGGACTATGAGTATGAGGAGATCGATCCTGTGGGTATCGGTCATGCGGATGACGTGGACGAGGGCGTGCCGTTCTACAACGCGGGCACTGCCGAGGATGATTTCTGCCATGTGGCGGATGTCAGCGACCCGGACGGGCATGATGCTCTGCAATACGGCGGCATGTACTACGAGGAAGGAATGGGTTATACCAACTCCGAGGACAGGCAGTCGCGCATCGACTGCTTCAGGGCTGCGGAGATCCTGTATCGGCATGCGGCGGGGCGAGGGCATCCCATTGGATGGCTGTGTCTGGGCTATGTCTACTCTTATGACCGTTGCGAAGGACGGTACTATCGCTCGTATTTCGACAATTACGGCGTAGTTCCGGCGAAACCGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 3259-3405 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQSP01000055.1 Bifidobacterium jacchi strain MRM 9.3 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 3259 23 100.0 39 ....................... CAGGGGGAATCCCGAGAAAACCTTGCGCAAACGACCCCC 3321 23 95.7 39 ..A.................... CAGGGCAAATCCCGAGAAATACTTGCGCTGAGCAGCGGG 3383 23 95.7 0 .....................A. | ========== ====== ====== ====== ======================= ======================================= ================== 3 23 97.1 40 TTTGCGCAAGGTTTTCTCGAACT # Left flank : GAATCAGATACAGGTCGATATAGTCGAGACCCATGCGGGCCACCGACTCCTCGATGGTGGCGCGCGCCTGATCGTACTGGTGATGGCGGCCCGGCAGCTTCGAGGCCACGATGATCTCCTCGCGCGGCACATCCGACTCGCGAATCGCCTTGCCGACCACGCCTTCGTTCTCGTAGTTGAACGCGGAATCGATGAGCCTGTAGCCCACTTCCAGCGCCGACTTGATGGCCTCCGCGCCCGCGAAGCCGTTCACCTTGTATGTGCCGAATCCGATGGCCGGCAGCTCCAGTCCGTCATGCGCCTTGCGCGTGGGGATTGCCGGCGGTTCCATCAATGTCATGGTCGCTCCCTTTCGATCGCCAGATTCATGTTGCCTGATCGCGGCATCGTGCGATCGGCGTCAGGACGACCCACGATACCGAGACAATACTGTACTGCGTTCGTTTCCTCACATTCCTCCTGCGCTTGCGCTCAGCAGCGGATTCGCCCTCAGCAGCGGA # Right flank : TGGTCGATCATCCCGAGAAAATCTTGCGCTGGTGGGTTGGAGAGCTGACCGACACAATGGCTGGTGTCAGCATCCCATGTCAGAATCCCAAGTCAGCATCCCATGCAAGCAGCCCAAGTCAGCAACAGCAACGCACGCCGGCAGCCCATGTAAGCAACCCAAGTCAGTACCGCCTCAAGTCAGCAACCCACGTCAGCGACTACGTCAGCTATCCACGTCAGCAACCCACGTCAGCAGCCCGTGCCAGCAGCCGGTGTTAGCAAACCGTTAGTGAATCGCCGCTGTGCGTTCGTCGGCGCGTATGGGAACCATAAATACCCCCTCGTTACCATTTGCACACATTTACAGTTGGATATGCAATGACCCGATGGCGAGCATCCGTCGCGCGCATCGGCTGAGGTTTGGCCGGTGCACGCTTCGGTGGCACGGCATCGGGTTTGTTCGTATGACAAGGAGAAGGACATGCCCTGGTGGGTTGATGTTGCCTACGTCGTCGGCAC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGCGCAAGGTTTTCTCGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //