Array 1 68096-66738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBD01000001.1 Pediococcus damnosus strain DSM 20331 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 68095 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 68029 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 67963 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 67896 36 100.0 31 .................................... CACTTCCACATTTTTGGCACCATCAAACGCA 67829 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 67763 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 67697 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 67631 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 67565 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 67499 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 67433 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 67367 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 67301 36 100.0 30 .................................... CATTAACAATCGCAAACTCACCATTTCCTT 67235 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 67169 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCAGA 67103 36 100.0 30 .................................... ATCTTATCTGGCATTTCATCACACATACGT 67037 36 100.0 30 .................................... CTGACCATAAAGCTGTATCAGCAACCACCA 66971 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 66905 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 66839 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 66773 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.6 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAATC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //