Array 1 10499-12114 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODB01000045.1 Salmonella enterica subsp. enterica serovar Newport strain R8_5045_R1 NODE_15_length_120273_cov_0.834365_ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10499 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 10560 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 10621 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 10682 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 10743 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 10804 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 10865 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 10926 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 10987 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 11048 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 11109 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 11170 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 11231 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 11292 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 11353 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 11414 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 11475 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 11536 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 11597 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 11658 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 11719 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 11780 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 11841 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 11902 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11963 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 12024 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 12085 29 100.0 0 ............................. | A [12112] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 231816-233001 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODB01000079.1 Salmonella enterica subsp. enterica serovar Newport strain R8_5045_R1 NODE_2_length_239240_cov_0.873117_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231816 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231877 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 231938 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 231999 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232060 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232121 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232182 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232243 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232304 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232365 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232426 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232487 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232548 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232609 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232670 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232731 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232792 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232853 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 232914 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 232974 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //