Array 1 106357-105901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAN01000024.1 Micromonospora chokoriensis strain NRRL B-24750 contig24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106356 29 86.2 28 .C...T...................A..C TCAGTCGCACCGGGCGGCATGCTTGATC 106295 29 89.7 32 ..................A......A..G TACGAGTCGGCGATCTGAGTCGGCTCGTCGTT 106234 28 89.7 32 .................-.......A..G GCACGGGCCAGCGGGTCGGCGGACTCGACCAG 106174 29 75.9 32 ..A..TT............C..C..A..G CTGGCCCGAATCGTCGACACGCTGCACTTCGC 106113 29 89.7 32 ...........A.............A..G GCGTACCGGTGCTTCCCGCCGCTGGTCACCCA 106052 29 93.1 32 .........................A..G CAGTCGACGTCAACGGTGGCGTAGTCGTTGAC G [106035] 105990 29 100.0 32 ............................. GCGCTCCAGGCGGGTGAGCGTGGCCTTGGCGA 105929 29 89.7 0 ........................AT..C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 89.2 32 GTGCTCCCCACGCCCGTGGGGGTGGGCCA # Left flank : TCGAACATGTCACCATCGGTCAGCGCCGGGCCGCGCCGTCCGTCGAGAGCATCGGTCAGCTGGCGCAGACCGTCGATCACCGTCGTCTTGCCCGCATTGTTCTCACCGGCCAGGACAGTGACCTCGGGCCGCAGCCGGACGCTGACCTGCCGGCACGACCGATAGTTCCCGATCGTGATGTTGGAAACGAACATGACCGCCCCTACGAGTACGAACGTCCATGATCGCAGCGAACCCGATCATGGACGTCGGACATCAGGTCCGATCCCCGGCACCGAACGCACGAGGCGCACTCCGCCACCTGCCGGCAACGATCCGTCCAGCGTCTCGCCGACGCGCAGGCAAAGACGGGCAGCTGAGCGACGACGGTGCAGCCCGACCGGAACCCCCGAGCGCACCTGGCAAACCGCCAAGTACAACAACTTCCGCCTCGCCATCGCGCCGCCGGGAGGCGTCCGCCCAGACTCCGCGCCCTGCTGAAGAGGTCTCGAAGTCCACCG # Right flank : TCCTTCGGCCTCGATCACGTACTCCCGCACATTCCCTGCACCGTGATGGCTGGGCCCGCCGATCGCACGCCAGGCCCAGCCCACACGGGTCATGTCAGAGGGTGCGGTTCGTTGGTGAGTGCCGCCAAGGCAGCGGCGACCTCTTGCAGGGTGGCTCGCACGTAGGTTGCGGTGGTGCCGGCGTCACTGCCACTGTCCGAATGACCGGCATAGGCGCGTGCGACGCCGTAACCGAAATTTCGCTCCACCCACGTGAGCGTCGTGTGTCGCAGCCAGTGGGTGCTGATCTGCTGCACGTAGACCCAGGGCAAGTGCTCACCGATGCGTACCCACAGGTGGTCGTAACGCCGGTAGGTGATGGGCTGCCCGTTGCGGTACCGAAGCAGTTGGCCCGTGTCCGTCGCGCCCCGCTCCTCGGCATGCCGCTGCAGATATCGCATCAGCGTTGGGGAAACGGGCTGCCACCGGACCGTGTCGCCCTTCTCGCGAAGCAGGATGAG # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCCCGTGGGGGTGGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 159871-161550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAN01000005.1 Micromonospora chokoriensis strain NRRL B-24750 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 159871 28 100.0 33 ............................ TACGTCCGCGGCTTCACCGACGAGGAGCTGCTC 159932 28 100.0 33 ............................ CAGGGCTCCGGAGTCATCAGCCAACGGCCAAAC 159993 28 100.0 33 ............................ GGGTCTCGAGTTCGTGCGGGGCATCCACCTCAC 160054 28 100.0 35 ............................ CCCCCCCAGACACCCTGTTTTCCGCCTCTGGAGGC 160117 28 100.0 33 ............................ GCTGACGCAAGCTGAGCTGAAGGCACTTTATGA 160178 28 100.0 33 ............................ CTGTCTACGGTATTCGTGCCTGGTTCAATGACG 160239 28 100.0 33 ............................ GCGGTAGGACTGGCCGGACTCCTCCACCAGTTG 160300 28 100.0 33 ............................ CGGACGCTCCCCAAGGCGAAACGTATCGAGCTT 160361 28 100.0 33 ............................ CGTGGTCCGCCGCCTGCCCGACCCGCCGGCTAC 160422 28 100.0 33 ............................ TGGCAGCGAAAAGACCGCCGCACCATTCAAATC 160483 28 100.0 33 ............................ CGACACGGCGTCGGTAGCGGTGGTGGTGATGTC 160544 28 100.0 33 ............................ GTGGGAACCGGCGCGGCCGATCGCGGAGTTGCA 160605 28 100.0 33 ............................ CACGGCTGTCAGCAGCGAGGAGCAGTCCACCAT 160666 28 100.0 33 ............................ GGCGGTCCCCAGGGTGGCTCCCACGTCCGCACC 160727 28 100.0 33 ............................ GGCTGAGCGGTCAACGGGGTTGTCCCGGACGGC 160788 28 100.0 33 ............................ CGCGACTTGCGTCTCCGTCGCCTCCCCCGCCAC 160849 28 100.0 39 ............................ TCGGCCACGACTTCATGGCCCGTGGGATGAATCCTGCTC 160916 28 96.4 32 .C.......................... CTTGTCGCTGGTCTTCTGCTCGTCTTGACGAG 160976 28 100.0 33 ............................ GGGCGTGACCCGGTACGACGACTCGCACGACAC 161037 28 100.0 33 ............................ CATGCGCGGCCCGAAGCGCGACACGGTCAAGGA 161098 26 92.9 34 .....-..........-........... GGCCATGGCCGTACCGATGTTTCGGTACGTCCGG 161158 28 92.9 33 .............G.......A...... CGACACCAGCAACAAGCCGATGTTGGGCCCGAT 161219 27 92.9 33 ..A...........-............. CGCACGCCTGGGCGTGGACGGCGTCAGCTGAAA 161279 27 92.9 33 .....-..........T........... CTCGAACGGGTAGCGGGGCTGCGGACTGATGTC 161339 28 85.7 32 ..........G.C..A..........T. GTCCGCGCGGACCTGGGCGGCGGGATCTGGCG 161399 28 85.7 33 ......T.....CG.C............ AGAGGCCACGAAGCTCGGCCTCGACAAGGAGGC 161460 27 89.3 32 ............C.-........A.... AGGGCATGACGGCTGACCCTGGAGACCGGCGG T,A [161477,161482] 161521 28 89.3 0 ............C..T.......A.... | CA [161533] ========== ====== ====== ====== ============================ ======================================= ================== 28 28 97.1 33 CTGCTCCCCGCGTACGCGGGGGTGATCC # Left flank : CACCCATCCTACAGAGCATCCTAGGAAGACATCTCCTATCGAATGGCAAGTGGCCACCCATGCGCACCCGTTTCCGATGCAGCCGGGATCACGGCCGCTCGGAATTCCCGTCGCAGCCCGAACCCGACCACTCTCTTCCGCTGGCGGATCTAGTGGCGGGTCTACTCGGCCCGGAGCCGGAGCGCCTCCGCCGAAGGCGGCCTAACCTCCGCCCAGACAGCACCTCGACCTGCTGGCGCGGATCGATTCCGTCGCTCCCATCGTGTTCATAGGCCCACCGGCTTCGCATGGCAAGTCGCGGGCAGGCAACGTCATCTTTGCTCAGCCGGTAGATGCAGCGCTCCCTGGTCGTTCCACTTGAGCCTCACCAACTACGCTGTAACCGAACTCGTTCGCCCTCCACATACCTCCTTAGACCAACCGAAACCGAGTGAATGGTCTTGCGGAACCTAGTGAATGAAAACCGCGAAGTCGATCTCTAACGCCGCAGGTCAAGAAGT # Right flank : CCGTGTGCATCGTCTGCTGAGCCTGGACAGACTGGAGGTGGGGGCTTACTACCCGTCATCTCCATCGCCAGCTGCCGCGCGCGAAGGCCGGAGCAACGAACAACCTGGCTTGTGGCCGTGCCGTGCTGGTACTCGTATACGGCTGAACGTCTTGCAATGACCATCGATCGGATCATGACCGCCAGCCCTAGCGGTACCTAGAGTGGTGGGGTGTTAACCCTCGGCGTTGACCTTGCAGCCGCAGACGAACGTACGGTGACGGCCACAATCGAGTGGCTACCAGGCCGGGCAGTAGTACGGGAGGTAGCCCTTGACGTCAGTGACGCTCGGATCGTCGAAGCGAGTCGGCACGCGGACAAGACAGGGTTGGACTGTCCGCTCGGTTGGCCGGAGCCGTTCGTCACCCTCGTCACGACCCACCAGGTCGGCCATGTGATGGCTCCTGACGGCGAGGGCGGACCCTGGCGGCGTCACTTGGCCTATCGCCAGACTGACGAAGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 168743-169233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAN01000005.1 Micromonospora chokoriensis strain NRRL B-24750 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 168743 28 96.4 33 .....................A...... GCGCGCCGACAAGTGGGGCGTGGCGTACGCCGA 168804 26 92.9 33 ..............--............ CTGGGTGCGCAGCACCGCCGCGTATTCCCGCGG 168863 28 96.4 33 .C.......................... CACGATGTAGAGCCGGTCGCGCCACTGCAGGGC 168924 28 100.0 33 ............................ ATCCATGAGGTTGTCGAACACAGTGACCTCGGG 168985 27 78.6 33 ...A..........TA.-A........G ATGTTGGCACAGGGCGGCCAGCGTGTCCCGAGC 169045 28 96.4 30 .......A.................... ACGTCTGCAGCTCGGAGCTATCGACGTCGG 169103 27 78.6 76 ...T..G..A.........C.T..-... CACACCGGAGGCAGCTTGATCGACGGACTCTCGGGGAAAACTCCTCGGGAATGTGCTCAGCCTTGGGCCTATGCGC 169206 28 75.0 0 .......T....T.AC.A...C.A.... | ========== ====== ====== ====== ============================ ============================================================================ ================== 8 28 89.3 39 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGTTGCCGCTGCGCACCGGGGCGACGCCCTGCGCTCCTCAGAGCCGGATGTCTGGAAAGCCCTGTACGACGCCGCCCGAGCAGAGTCGGGAGAGCTCGGCGACTTCGCGCCGTACTGGGTGTTCCCGGGGGAAGCAAAAGTCGAGCGGCATGTTCTGCCCTACCCGCTCAGTCGCGACCAGGCGCGGTTCGACCGGCTCAAGGCGAACTTGGTGCGATACCGGCTCGCTTTCGGTCAGCCGCGACAGGAAGACCTGCTCCTTCTTCTGCAACGGCAGCCGATCGGCGAAACCGATGTGCCTGAGGTCCTCGATCTACGGCCCAAGCCTGACGGAAACCAGCCGTAAGGCAACTGGCCGACGACGCGAGCCGATGATTAGGCTGAAGCCGAGGATGCTTGGCGTGTTCAGCAACCGTCGACACCGAGACGAGGGGAACGATCCTACAATCCAAAATGGATGAAACCGTAGAGTTGATCTCAAAAGCCGCAGGTCAAGAAGT # Right flank : CCCTCGCCACCACACCGTGAGCAGCTCGATGTCCAAATGCGCTCTATTCCAGGTTGTTCGGGCGGGTCGCACAGCAGGTCCGTTCGATTGGTGCAACTCGGTGATCTGGTTCCGTGCGGAGCAGACACAAGCCTTTCTCCCAGATCCGGGGGCTGTCCTAGTCCACCTCGGCCCGTCCTGCTAAGCCCCCACGGAGGAATGATCGGAGTTGTCACCATGCCGACAAACATCTTGGGCGACCAGCGTTGAGCGGACACTCTCGACCCTCTGCGAAGCAATGACGAGGCGCTAGGGCAGAGTCGCTGCCCTAGCCGTGCCGACTGAAATGGAAAGTGGAGCAAAGCTGAGTGACGGGTGTGGTGTCGGATCCTGAGCGAGTCGACGTTCGAGTCTTCTGGGGAAAGGCTGGTGCCGCGAAGCAGGGCGAGGAGACCATCCCGCACCCTCTGATCTGCCACACCATCGATACCGCCGCCGTCGCCGAGTTGCTCTACGAGCGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 179590-180531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAN01000005.1 Micromonospora chokoriensis strain NRRL B-24750 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 179590 28 100.0 33 ............................ GTCAAATTTGCTGTCGGGGTGGAGGGAATAAAA 179651 28 100.0 33 ............................ CGTGTTCGCCTTGCCCATCGGGTGAGCCGGCGC 179712 28 100.0 33 ............................ GTGCGTGCGGCGGTAGCAGAGGTGGCACAGGTC 179773 28 96.4 33 ..............T............. TGGTGAAACGTTCCCGGCCCAACCCGGGGCACC 179834 28 100.0 33 ............................ CCACGGCTTTTCCGCGTGGGTCGACGAACACGC 179895 28 100.0 33 ............................ CCCGTCGGCGGTGATGTCCAGCTCGACACCAAC 179956 28 100.0 33 ............................ CCGGCTGCGAATACCGTTGATCAGCCCAGCGAT 180017 28 100.0 33 ............................ GCTAGTCCCGCTCCGGGACCAGGTTTGATGTAC 180078 28 100.0 33 ............................ CAACATCTCGTCGGCGCGCTCGGCGGCCATGCG 180139 28 100.0 33 ............................ CGTGCCATCGGAGATCGGCACCCACCGCGCGTA 180200 28 100.0 33 ............................ CTCGTCGCACCGCTCGGCGATGTTCCATCGGGC 180261 28 96.4 33 .................T.......... TCTCCTCAACAGGCTCAGGAGTTGCCTTCAGCC 180322 28 100.0 33 ............................ CCGCCCGCCGACCTGCTGGCCGCCGACAAGTTC 180383 28 100.0 33 ............................ GTCCACGTCGAGGCGGAACGTTGCCGTGAACTT 180444 28 100.0 33 ............................ GTCAATCATTGACGTGCCCTAGCGGTCCACGGG 180505 27 96.4 0 ............-............... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGTGGCCGGTCGCGCCTCCAGCACCGGCAGCGGAGCCCTGCGCATCGACATTAAGCGGCTCGCCATCCCCGTACTGCCGCTAGACCAGCAGCAAGCCTACGGACGAGCCTTCTGCCAGCTTGTTGAGTTTCGCATCGGACTTGACCGGGCCGCAGCGAACGGTGCCGCGCTGGCCCGCGAGATCGGCGACAGCCTAACCGCCGGCGCCCTCGGCCCCCCATCCTGATCAGACGCGTCTCCATACGGCTGAGGTGGTGTTCGGTGCCCCGGCCACGGCTCCCTCCACCGCTTGATAGGCGCTGGCGCATGGCCCCACCTCCTCCCGGCGCCGTTGGGGCGTCCGTTGCTAGTCGCCGTACTGCAGCCTCAGCAACTACGCTGCAGCAGAGGTCGTACCCTCGAGATACTTGCTCCCGGAACCGAGACCGACTGAGACGATCTTGCGGATCCTCGTGATTGAAAACGGCAAAGTTGATCTATAGCGATGCAGGTCAAGAAGT # Right flank : CGATGCATCCGCATGCCTCCACGCGCTCGATGCACTGCTCGATCCGCCGTTCGCGTTGATACCCATGGCTGATGGAGGCCGCGCGACACAGCCAGTCGGCGCAAGCCAACCCAGAAACACCCAACATCCTGTCTGCCATCGACCCGCCCTTCGGGGAGCAGGCCGCCGCCCGGCCCGCCGCAGCCCGCGAGCCGCGACGCCTCGTTCGTACGCTGGCGGGCCGGGCGGCGGCCTGCTCGGCTTGCCCGGGTCGATGGCAGACAGGATGTCCTCACCGCAGCCACCCATTGAGCCGGCAGCCGCGGACGATCCCCGGCCATCCTGGAGCCGGAGCGCCCCCGCCGGAGGCGCTGTAACCGCAGCCCACGCGGCGGCCGACCACAGGACGAACGCCCGGCGGTCCTGGTTAGGAGAACCTCTTCGGTGGTGCTGCCGTGGGCCGCGGATAGGCGCACTTCCGGTGAGTGTTCGCGTTACGACCGGTACGGGCATCGGTCATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 254981-256470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAN01000005.1 Micromonospora chokoriensis strain NRRL B-24750 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254981 29 100.0 32 ............................. GGCGAGGCGGTCGCCTTAGCCAACAAGCTGTT 255042 29 96.6 30 ............................T TGGGGCCCACCGGGCGGACCGTGCACGAGC 255101 29 96.6 32 ............................C GGGCTGGCTGTGGCACATCGGGCAGCCGCAGT 255162 29 100.0 32 ............................. GTCATGGACTCGTCGTGGAAGCTTCGCACCGA 255223 29 100.0 32 ............................. CAGATTCCGGCGTCGGACCCGGAGCCGCACCT 255284 29 100.0 32 ............................. ACCCGGGGCCTGCTGGCCGCGATCACGTCGAA 255345 29 96.6 32 ............................C CGATTCCTAAACCGTGTGTCGCAGGTTCGAAT 255406 29 96.6 32 ............................C TCCGACGCCCCGATGGCGTCGGCGAACCCACC 255467 29 100.0 32 ............................. GGCGGCCAGCGGTCCTCGGGCAGGTCGCAGGT 255528 29 100.0 32 ............................. CCTGCCCGACTAAAGTCCTACAATGCGATGTC 255589 29 96.6 32 ............................C AGGGGTGCGGTCCAGCCGGTGGCGACGGACGC 255650 29 96.6 32 ............................C GCTTCCGCCCACTCGTGGCACCTGGCGGCAGT 255711 29 100.0 32 ............................. TCCGTGGTCGACAAGCTGATCGGCTTGGTCCC 255772 29 100.0 32 ............................. TCGCGGGTCGCCGATCGTGCGGTGCGCAGACC 255833 29 96.6 32 ............................C CGGCTGTGCCCCGGAAAGGGATCACCCACGAC 255894 29 100.0 32 ............................. GTCAGCCGGCACTGCCGGTCGGGATCACCGCG 255955 29 96.6 32 ............................C ACCAGGCAGCGCCCCGACGGACCGACCACCAC 256016 29 96.6 32 ............................T GTGATCGTCACCCACTGGGCCTCCGGGCGGAC 256077 29 96.6 32 ............................C TGCCCGCCGACCTGCGGAATCGTGTAGACGAT 256138 29 100.0 32 ............................. CTCGGCATGCTGCTGCTCGGCGTGGTGATCCC 256199 29 96.6 32 ............................C AGTCAGCGGTCGCTGGCGCAGTCGTACGACCA 256260 29 96.6 32 ............................T CGACGCAGCACGCAACGCCCACATGTGCGGAC 256321 28 93.1 32 .....................-......T GGCTGGATTCGCGGAGGGCCGCGCTACGTACG 256381 29 93.1 32 ..............T.............C CGGAACGCGTGCACGTCCTCGCCACCGAACGA 256442 29 93.1 0 .......G....................C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.5 32 GTGCTCCCCGCGCACGCGGGGGTGATCCG # Left flank : GGGTGCCGCCCGCTCCCCATTGCCGATCTGCGACCGCGCCCGGTCGCAGGTTGATAAGCAATGGCCATATCTTGCTCCTGTCAGTCGCTCCCGTGCTTCCGCGCAATGGTGGTTCCGTTCTTTGAGGGCCCGTCAGGCAAAGGGATGCCCCCTACCTGGTGACCGTCACCCGGCACCGGACTGACGTCAGCCTGCGACGGATATGTCCTGGAGATGGGCGATGCCCGAAGCGACGTCGGCTCATTGCAGGCGGCGCATCCGTGGCCGCGCAGGAGCTTCCAGCACTTCATCTGGCTGGTAGACCTCGGCGTGCACCGTGCGGTGCTGCTTATCCGCTGGTCGCTTCACTTGAGCTTCATCAACTACCCTGTAGCAAAGTTCTCTTGCTTCCTCCTACATAGCCACTACGCGAACCTGAACGAAGACCAAGTGGGACGATCTTGCGAAACCTAGTGAATGAAAACCACGAAGTCGATCTCTAACGCCGCAGGTCAAGAAGT # Right flank : CTTGAAGACGCACGTGTAGCCAATCGTTTACCTGCCAAAGATGTTCGTCCGCGAGTTCAGATCACCCGCGTAGGGAGCGTCGATCGGCTTGCTAGCGGAAGCGGGAGGATGACTCCGCCTTGTTCCCCGCGCTGAGTCGTCGATCGGTCGACGAGTCGGCACGGGGATGGCCGGTTGCAGTGAAGCCCAATCGGGCTTGCTCGCAAAGTGGCTACTCGACGGCGAGCAGCTTGAGGATCGCTGGCACAGGCACCAGGTACCGCCGGCCAATACGCAGAAGGCGCACTGGGAACTCGTTGGTTTTAGCCAGCTTGTAGGCCTTGGTCCGTCCGATGCCCAAGATCGCCGCAGCGGTCTCCACATCGGTGGTAACACCAAGGTCCCGTACCGCGTCGACCGTCCACACCTGGTCCTGCACCCGGCCCGGCTTGTATCCCTCGCTTGTGGTGGTTGACATGGTCGGCGCCCTCCCCTGAGGTCGTAAGAACACCGGTATCGGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //