Array 1 124457-123394 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000019.1 Nocardia sp. SYP-A9097 NODE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124456 28 100.0 33 ............................ CTGAACGCGGGCATGTTCACCGCCGCGGAACGG 124395 28 100.0 33 ............................ CACTTCGATCCTTTCGCTAACTAACTATCGCAT 124334 28 100.0 33 ............................ CAAAGATTTCCTGCGGCGCGCCACCTACAACGA 124273 28 100.0 33 ............................ CACCGTCTTGGTCCGAATCACCGCACACCCCCG 124212 28 100.0 33 ............................ GCCAAGATCATCGGCCCCGTCGGCCCCGACGAA 124151 28 100.0 33 ............................ CACGCCCCAGCCAAAGGTCCTTCCGCCTAAACG 124090 28 100.0 33 ............................ CCATGCGCCGCACCGCAGATCGTTTTCGGCGCA 124029 28 100.0 33 ............................ CGACACCGTCAACACGTGGCAGCAGAAACGCAA 123968 28 100.0 33 ............................ CATCACGACGGCGGACACGTCGGGAGCAATGCA 123907 28 100.0 33 ............................ CCTCGAAGTTTTGAAGACGGTGTTCGGTGATCT 123846 28 100.0 33 ............................ CCCAGAAGTTCCAGCTGTCCGCCGACCCCGAGG 123785 28 100.0 33 ............................ CGACTGCACGCCACGGCTGCCCGTCGAGGTGCT 123724 27 92.9 33 .....................-.A.... CCCCACCGATATGCAAGCCGTCGAATTCAGTGG 123664 28 100.0 33 ............................ CAAGGCATACGTTTGGCTCGACGGCGACGGATA 123603 28 100.0 33 ............................ CATGTCCATCGAAGTGCCCAATTTCGACCCCGA 123542 28 100.0 33 ............................ CAGATCTCACGATCGAGGTCGCAATGGCCACAG 123481 28 100.0 33 ............................ GTCGTTCGTCGCCGGTGAACTCGCGGGCTTCAC 123420 27 82.1 0 ........T............AA-...A | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.6 33 GTGCTCCCCGCACGCGCGGGGGTGAGCC # Left flank : GGTGACGGTTGCCGCGCAACAGCGCCTGTGCTGGTTCCCGGTGGTGCGATGGTTCGATCCATCGAACACCGTTACGGCGCGGCTGTCGAGTGGGAATAGTGCGGTTGGTCTCCGAGGTCGTCGAGCGCTCCTTCGGGTCTGATGAGTTCTCCCGCTGTGGTGCTCGAACGTCATGAACCAGCATCAGGTGTCGATCGGGTGTTCACGCACAGGCGGTCTAACCGCTGTAAACCACTGATGGTGCTGGGTGCGGCGTCGCGGGCTCCATCTCAGCACGTGCGGTGGACGAGATCCTGCAGGTCATCGTCAAATATCAAGACCCCGTGCAGATTTCGATCGGGGCACTCGCGGAAAGTGTGTCAGTATCGATTTTCGAAGAGTGTCCACAAGGTAGGTGAGAGAGGCGGGTAGGTGGGTGTTGTCGCGTTTCGGTCCGCGCGGAACGCAACATAAAGTGAATGAAAAGCGGGTACTCGCGCTGTGGAACGGCTGGTCAGGAA # Right flank : GAGGAGTCCCGAGACCAGGCAGAGGACGCCTCCTACGCGCGAATCGGGTGACGTCCGGCGAATTTGCTAGCTGATTGCTTGCGGGATGTATTCAGTGGACGTTTCGGTGTGTCGACACGCCGAGCGTCGCTAGTGTGGCCCGTGTCGGCGGCCTCCGGCCGGCCGCATGGGTGTGCCGCGGGTGCGCAGGGCGTCTCTGATGGTGCTGGCGGGGAAGCCGGTGAGTCGGCTGCAGCTGGTGAGTGAGTGGCCTGTGAGGTAGAGCCGTTCGGCGTGGTCGATGTCTGGGGTGGTCATGGATTGATACCGCCGGGGGACCTCGTGCTTGGTCAAGAGTGTCAGTACCGCGGTCTTGGAGATTTCGAATCGTGCGGCGAGTTCGGCGGTGGATGCGCCGTCACCGTAGGCCTGGATCAGTTCCTCGACCGTCGCGGAGGGGAGACGTCGCTCGATCTTGCGGGGCTCGGGGAGTCTGGTCGCTGGCGGCTTCTTGCGTCGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22078-21866 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000037.1 Nocardia sp. SYP-A9097 NODE_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 22077 28 85.7 33 C.CA.....C.................. CACGTACGTGCTCGGTGGCCAGTCGGTGTCCCA 22016 28 100.0 34 ............................ CCGTGCTTCGGCGGTAGATGGTTCGTTGTCGTCG 21954 28 100.0 33 ............................ CGCTCGCAGCAACTCGTCACCGACCGGGAGGTC 21893 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 4 28 96.4 34 ATGCTCCCCGCGCGTGCGGGGGTGAGCC # Left flank : GGCCAACTGGCGGCCTACCTACGTCACAGCGGAGTTCTCCTCGCGCCCAAAGATCAGCCGTACCTCCAGGATTCGGTGGACCTCCGCAACACGAGTGGCGCGAGTACTACGCGATGGCGCCGGATTCTGCGGCGCGCCCACCCGATATCGCACCGCCACAGTACTTCTCGCCGACATACCACCGCCGCCGACCCGCCACGTCGATTCTTTACGGTTCCGGTGAACCTGATGAACGTGTCCCCGAAGTCCTCCTGGCTGGGGTCCGCAACCCGCTGCACTCGATGTTCGACCAGGCCGACCCTGAATCGGTTGGCGCGCAATATGATCACATGCTCGACGCCCTGATCGGAAACTACCGATATACACAATACATTTGGACTCGACCGATAAAAAAATCTGCATTTCGCAAGGAACTGCTCAAGCAATCCGCACCAATCAGATAACCCCCGCACTCGCGGGGAACGTTTGCTCCCTGGGAAGGCCGAGGCGTTCGTCAAGGG # Right flank : CTGGTAAAGCGGTGGCTCGCGTCGACGGGGTGCATGCTCCCGGGGGTTCCGTGGACCTCAACCCCGCGACTCACCGGTGAACCCCCGATATCGAGGCTGCTACGGGCGCGGGCCGTAGCGCTGCTCGTAGGCGCGGCGAAGGTGGGCGTCGCGCTCGCGGGAGAGTTCGTCGGCTAGGGCGGGATCGAGTCCGTGCTGGACGAGTCGGTGGCGCCGGTGGACGGTGTTGAGCGCGACGGCGAAGTAGATGAACGGGATGAGGATCGGCAGCGTCATGCTGACGTGCACGTAGAGCGATGTCCGGATCAGCAGCATCGGTGCCAGCAGCAGGATGCAGGGAATGGTTGCCCGAACAATCATTCGCCTTGTCGCGCCCTTCCCCGCCAGATCATGACGCACCCAGTCGCGCATGGACACCGGCAGCACGTACCCGTAGCAATAGGCCAGGTACTGGGCGAGGTTCGGCTTTCGCCGTTGGGCGTGGGTACTCATGGGCGGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCGTGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35434-34982 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000049.1 Nocardia sp. SYP-A9097 NODE_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35433 29 100.0 32 ............................. ACCATCGTCTACACGTCCAACGGAAGCTACAC 35372 29 96.6 32 ............................T GCCATGGCGACGCTCGGCTATCACGCGCTCAC 35311 29 100.0 32 ............................. GATTCGATCCACAAATGGCACGGGTCGCACAG 35250 27 89.7 32 ........--..................T GAGTACCCCTCAGTCCTTCATCTCAACTTCAC 35191 27 93.1 32 ........--................... CGAGTCGGATGTGGCCGCCGTGTATGCCGTCT 35132 29 100.0 32 ............................. TATCCGCTAGCCGTGTTGATGCAGCTAGCGAT 35071 29 93.1 32 ..............T.............T CGCCCGCAACCCCAGGTGACCGGGGTGCGGCG 35010 29 48.3 0 .............ATTGA.AACCCCAAAG | ========== ====== ====== ====== ============================= ================================ ================== 8 29 90.1 32 GTCGGCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GACCCGGCCGCGGTAGTGCTCGGCCACCAGGGATACCCACTTGGCCGGATCCTTCTTGTGCGAGACCTCCATCTCGAAGACCTTCACCAGCTCTTCGACAATGTGCTCTCACCTACACCTCGGAGTGGATCGACCACGG # Right flank : AGCGCGACCGAGTACGCGCCTTAGCGACGATGCAGGCCATCGGCCCGGCGCGGCCGCGATCGATCCGCCCAGGACGCGGCACTCCGGAGGTATGACATCCACAAACGCGTAATCCAGGACAAACGCATAGGGCTGCTCGCCATCTCAGGGATTGTTCGGCCACGGTCCCGCTCGGAACACGGCTACTGGACTGTGCGGCACCAGTGGTAAGGGTGCGACCGGTCGGTGTGGACCGGCAATATCATGACGCCGTGAGTGATAACCCGAAGTGTGGAATCTGCCGAGAGAACGACGCGGGCGAGGGCAAGATGATGTGCCCCGGCTGCCGCCAGGAGATCGAGACCAGGAACCGGACTCCCTATGCCGGGCTGCCGGTCAAACAACCGTAGCGGCCCCGACCGGTTGCGGTCGGAGCCGTAGGGCCCCAGCGCAACTCGTGCGGGGTCCCGCTGTACCGGATCGACCTTGCCGAACGCTTACGCCCCGGCAGCGTCGGCGAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17087-15468 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000040.1 Nocardia sp. SYP-A9097 NODE_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 17086 28 100.0 33 ............................ CTCCTCAATCGTCATGCGTCGAGCTCCTTCATC 17025 28 100.0 33 ............................ CTGGGTCCTCAGGCACAAGCGAAGGCTTCGTGA 16964 28 100.0 33 ............................ CAACCAGACCAACAGCACGAACCATGATCCGAT 16903 28 100.0 33 ............................ CGATTTTGGCAATGCCCGCTGAATAGCTGGTAG 16842 28 100.0 33 ............................ CAGGCTGGCTTTCTGTTCATCGCTGAGGTTGCC 16781 28 100.0 33 ............................ CTCACCCAAACCGAATTTGTTGTCATACCTGAC 16720 28 100.0 33 ............................ CGGACCCTCCGGGTCCAAGATCCGGTCCATGTG 16659 28 100.0 34 ............................ CAACCTGCCCTCGGTCGACCACCCGCAGTTCGTC 16597 28 100.0 34 ............................ CAACCTGCCCTCGGTCGACCACCCGCAGTTCGTC 16535 28 100.0 33 ............................ TGTGTCGCGGCCACAGTCCCGTTCGCCTTCAAA 16474 28 100.0 33 ............................ CTCACCTCGAGCGCTCACCGGCCGCATGTGATA 16413 28 100.0 33 ............................ CGCGCCGGGTACTGCGGAGTGGGTAAACGGATA 16352 28 100.0 33 ............................ CGGACGTTCCGCAACCCGCAAGGGGCAATGCGA 16291 28 100.0 33 ............................ CTGCTCACGGAGATGGGGTGCGCATTCTTCTGC 16230 28 100.0 35 ............................ CAAGCTTGGCCATGGTTAGGCTCCCTGATTTTCGT 16167 28 100.0 33 ............................ CACGCCGGGCAGGTCTTCGGCGGTCAGGAAGGT 16106 28 100.0 33 ............................ CACGCCGGGCAGGTCTTCGGCGGTCAGGAAGGT 16045 28 100.0 33 ............................ CACTCACCCCCTATGGTCTTTCCCTCTTTCTTG 15984 28 100.0 33 ............................ CCGGTGACCAGTGTCAAACTCGCCGACTTCGAC 15923 28 100.0 33 ............................ CACTCCGGACGGGGTCACCAAGGAAATCCAGTG 15862 28 100.0 33 ............................ CACGAGGAGCGCTACGCCGCTCCATCTCGGCGG 15801 28 100.0 33 ............................ CGATTACGACATGAATGACAGCGACATGGCGGA 15740 28 100.0 33 ............................ CTACTGGAACCTGACCTGCCGCACATGCGATGA 15679 28 100.0 33 ............................ CGTCGACGTTGAAGAACAGGCCGGTCGGGTTGA 15618 28 100.0 34 ............................ ATTGCGGTGGGCAGGTGATCGACCGCGGATACGT 15556 28 85.7 33 ACT.........T............... ATGAGAAGTGACGACGGTGGGCGATAAAGCTCT G [15533] 15494 27 85.7 0 .......T......T......T.-.... | ========== ====== ====== ====== ============================ =================================== ================== 27 28 98.9 33 GTGCTCCCCGCACGCGCGGGGGTGAGCC # Left flank : GGATACCGACGTGGTTCAACTGTGGGATCGACAGGGCAATGCCGATAGCGGCGTCTCCTACGCCGATGAGGAAGTGCCGTGGTAGTACTGGTCCTGAGTGCCTGCCCCGCAGGATTGCGCGGACATCTGACGCGCTGGCTATTGGAGATCAGTCCCGGAGTGTTCGTGGGTGTCCTGCCGATACGCGTGCGCGACTTGGCCTGGCAGCGAGTCATCGAACTATCGAAGGACGGCCGCGCCATCATGATCTACTCCACGCGATCAGAGCAGCGCCTCGCGTTCAAAGTGCACCGGCACGAATGGGAGCCAGTCGATATCGACGGCGTCCATCTGATGCGCCGACCACACACCGGGGACCACACGGCAGGACGGCCACGAGCCGGCTGGAGCAAAGCCAGCCGATATCGCAAAGCGGCGCAACAGAGCGCCAAGCGCCGCAATGGCGAGCAAAAGTGAATGAAAAACACCGTTCCCGACTACAGACATGCTGGTCAGGAAGT # Right flank : TCCGAGCGAGCCTGCTCAGAGATGCGGATAGTGATGCAAGGCAGCGACTCTCGATGAAGAATGGCGTGTCGCGAACCGTGTCGTGTATCGAAACTTAGCCCGCCAGCGACTCGCTGGCTTTCACTGACACTGGTCGGTTACTGTCCAGAATCTGTTCTCTTGTCATCCGGCTCGTTTAGCAGATTCAGACTTTGCGAACTATGCGGGATGATGCGCATCGGAACTCTTAATCAGGCAATTGGCCTAGGTGAGTTGCTCTTTCGGGGTCTCAACACGTGTGGCTTATGCCTATCTGCTGGAGCCGAAGCAGGATCGCCTATGAGTCCATAGCAACCCTTCAGCTCAGATCTCTCGATTGGCATAGCAGGACAGCGTTGTGGCTATTCAGCTCTTGTTAAATTATGCTGCGGAGCGGGTCATCTCGGAGGTTCCGGGCAGGCCCTTTCGCTGTGTGTTCGACGTTAATCCCTTATAGCCCCACTAAATTCGCTAAGAGAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28146-26592 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000040.1 Nocardia sp. SYP-A9097 NODE_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28145 28 100.0 33 ............................ GCTTTCGCCGCCCGCATTGAGGCTGCCCGCGTT 28084 28 100.0 33 ............................ CGCACCAAAGCCGAGCACGGGCCTCGTCACAGG 28023 28 100.0 33 ............................ CTTCTGCGGCTGGGTCCGCGTGCTGCCCGACGG 27962 28 100.0 33 ............................ CAAGTCCGATCTGCTGACTCGATACAACGATTC 27901 28 100.0 33 ............................ CTTCCAATACATTTTGTTGACGCCGTCGCTCTG 27840 28 100.0 33 ............................ CAGACTCCCGGGCAACCCCCGATCGGTGACCAT 27779 28 100.0 33 ............................ CAGAGCGCTTCCCCCGCACACGCCCAAGCCCAA 27718 28 100.0 33 ............................ CGTGACTTGAACTTCTCAGTGGGCGGGTAGATC 27657 28 100.0 33 ............................ CACGCACCGAGCGATTTCGACCCGGGGTACGCC 27596 28 100.0 33 ............................ CGGACCGGTGATGCCGGGGACTTTGCCCAGGGA 27535 28 100.0 33 ............................ CCGCGACCAGCTCCAACGCGAGCTCCAGCTCTA 27474 28 100.0 33 ............................ CTCGACCTCGCATGGATCAGATACCTGCTGTGG 27413 28 100.0 33 ............................ CTGCTCGACAACCCGGACCTGGCCAAGGACCTG 27352 28 100.0 33 ............................ CGCGCGCTTGGAGTTCGGCGTCGACGGCGCTGC 27291 28 100.0 33 ............................ CTCTTCACGACGAAGGACCCAGCATGACGACGA 27230 28 100.0 33 ............................ CTCTTCACGACGAAGGACCCAGCATGACGACGA 27169 28 100.0 33 ............................ CTGACCCCCGTTTTCCGGCGCTGGTTTACCGGA 27108 28 100.0 33 ............................ CGCTCGCAGCAACTCGTCACCGACAGGGAGATC 27047 28 100.0 33 ............................ TATGACGCGGAGCAGACCAAACGGGCCGCGACC 26986 28 100.0 33 ............................ ATTCAGGAGAAGGCATGACCGACACCCACCGCC 26925 28 100.0 33 ............................ CGTCGATCGCCTCACCCTTGCCGTGGAAGCCTG 26864 28 100.0 33 ............................ CGCTCGAAGACCTGGGTCGGCCGATGATCCCGG 26803 28 96.4 34 .................A.......... CTCAATGTTGAGCGCTGGCTCTCACGCATCCTGC 26741 28 92.9 33 ........T.T................. CCGATTCCACGGGTTTATTCATGAACGGGAGCA 26680 28 96.4 33 ..........T................. CAAGTCCGGATCCGCCTGGGACGTGCCCGCGTC 26619 28 85.7 0 .......A....T..T.....A...... | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.9 33 GTGCTCCCCGCACGCGCGGGGGTGAGCC # Left flank : GGTGACGGTTGCCGCGCAACAGCGCCTGTGCTGGTTCCCGGTGGTGCGATGGTTCGATCCATCGAACACCGTTACGGCGCGGCTGTCGAGTGGGAATTGGGCGGTCGGTCTCCGAGGTCAACGAGCCTCCTTCGGGTCTGATGGGTTCTCCCGCTGTGGTGCTCGAACGTCGTGAACCAGCATCAGGTCTCGATCGGGTGTCCACGTACAGGGATCCAACCGCTGTAAACCACTGGTGGTGCTGGGTGCGGCGTGGCGGGCTCCGTCTCAACGTGCGGTGGAGGAGATCCTGCAGGTCATCGTCAAATATCAAGACCCTGTGCAGATTTCGATCGGGGCACTCGTGGAAAGTGTGTCAGTATCGATTTTCGAAGAGTGTCCACAAGGCTAGGTGAGAGAGGTGGGTAGGCGGGTGCTGTCGCGTTTCGGTCCAGGCAGAAACTCAACACAAAGTGAATGAAAAGCGGGTACTCGCGCAGCGGAACCGCTGGTCAGGAAGT # Right flank : TGTAAATGGCGGAATTGTGATGGGCTGCTGGTGTTCACTGCTTGAGGCATACCGGACGTCGGCCATGGAGTTCGTGCAGCGTGAGGTCGGGCGTTGTCGCAGGCCCAATCGTCGCGTCGCGGACGCGCTGTGTCAGCGGATGACTTTGCGTGCCAGTTCCCGCTGGCCGATGGCGGGGCGCGCGTATTGCCTGCACACTCGATCGTGTTTGCGGACAGCTGGCTTTTGGATATCTGTGGCTGCTTTCGCGGGGGCTGTTCGAGGTTTGTGGAGGGGAAATGCGTTCTGTTTCAACGCTTTCGGCTGCGACGTTGTCTGCGTGGGCGAAGAGTGACGGTGCGGGTGGCAGTTTGTCGCTGGTCAGGCATTTGGCTGATTCGGCGTCGGTCGCCGCTCTGGTGTGGGATCGATGGTTGCCGGCGAGAACGAAGCAGGTGATGTCGGTGGGGCTGCCGGGTGGGGTCGAGGATGGGCGGGTGCTGCTGCGGTGGTTGGCGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 256-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000052.1 Nocardia sp. SYP-A9097 NODE_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255 29 100.0 32 ............................. GGATTCGATCGCACCGCCGAATGCACCTTCGT 194 29 96.6 32 ............................T CCGTCAAGGCCGCAGGCGATTTCCAAGCCTCG 133 29 100.0 32 ............................. GTTCGGCGCCCAGTGGGAGTTCGACCGCCGGA 72 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTCGGCCCCGCGCGCGCGGGGATGGTCCC # Left flank : CCAGAGGAGTCCTTCGACGCAGATCTCAATGTGCTCTGGGACGAGCAGCTCGGGATGGTTGCCGGCGGCACGAACTGGGCAGCTGCCGACGCAGATCTCGTACAACCAGACTTCGGCAGCAAGCACATCTCCATCGTCGGACCCGAGCTCGATAACCCGGAAGAATGACAACCATGACCGTTGTCGTCCTCATCGCTGCGCCGGTTGGACTCCGTGGCCACCTCACCCGCTGGATGGTCGAAGTCAATGCCGGAGTCTTCGTGGGCAACCCCAGCCGTCGAATCCGAGACCGCCTGTGGACTTTGCTCGCCGATCGCATCGGCGACGGCCAAGCCGTTCTGGTCGAACCAGCCGACAATGAGCAGGGCTGGACGGTCCGTACTGCTGGTCGCGACCGTTGGCGCCCTGTTGATTTCGACGGCCTAATTCTGTCCGCCCGCCGCCGAAACCAACCGAATGAAAATGAGCGTTCCGCGCGATAAAATCCCAGGTCAGCAAGT # Right flank : GTCCAAGCTCGCCACTGAAGACGCCGAGAAGATGTCGGCCCCGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11029-12154 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJIC01000052.1 Nocardia sp. SYP-A9097 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11029 28 100.0 33 ............................ CCAGTCGCGCACCATCGCATCCAGCGGCTCATG 11090 28 100.0 33 ............................ CGCCTGCTCCCCCAACAGGATTCGAATGTCACG 11151 28 100.0 33 ............................ CGGGTCCATGCGGCCCGGTTTGGATCCCCAGCG 11212 28 100.0 33 ............................ TCGCCTGTGCGGTTCAACGGCTTCCACAAGAAC 11273 28 100.0 34 ............................ CCTGCAGGCCGCCGTCATCGGCGAGTACGTGCAC 11335 28 100.0 33 ............................ CGGGAGGAGTGTCAGCACTCCGGGATACCCGGC 11396 28 100.0 33 ............................ TCACTTCTGGCACACCGGAACTCAGTATCTTCT 11457 28 100.0 33 ............................ ACTGCTGCGCGTACTCGCGCACCGCATGCGCAA 11518 28 100.0 33 ............................ TATGCCACCAGAGCTATATGAGCCGGGATGGAA 11579 28 100.0 33 ............................ CTCGGTGGGCAGATACCGCAACAGCGGGTCGCC 11640 28 100.0 33 ............................ TGCCGTACGGAGACAACAGATCCGGTGTTCGCG 11701 28 100.0 33 ............................ CGAAGCCACCGGCGGCAGCTACGCCCGCGTCCA 11762 28 100.0 33 ............................ CGGCACATCGAACGACGGCGGCAGACCGCACAG 11823 28 100.0 33 ............................ GGGGCCGTGGGGCGTGCGGTTCCGGCGGGAGCG 11884 28 100.0 33 ............................ GGGGCCGTGGGGCGTGCGGTTCCGGCGGGAGCG 11945 28 100.0 33 ............................ TTCGGATGCGTCGGCATCCAGCAGCAGTCATTC 12006 28 100.0 33 ............................ GAAACCAGCAGGTGGGTTGAGTACATCAACTCG 12067 28 100.0 33 ............................ CACTCCGATCCTGCCGGGCCGGGTCAAGGTGTG 12128 27 78.6 0 .........A.......-.....CCCA. | ========== ====== ====== ====== ============================ ================================== ================== 19 28 98.9 33 GTCGGCCCCGCGTGCGCGGGGATGGTCC # Left flank : CTTCCCTATGGAATTCCCTATGCCTGAAGTATCGGGTCGGCCCCGCGCACGCGGGGATGCTCCCGACGTGTTGCCGCCACCGCCGCCGGCGGTGCCGTCGGCCCCGCGCAAGCGGGGATGCTCCCTGGAGGGGCGCAATGGGTGACCTTCCGGAGGGGTCGGCCCCGCGTGCGCGGGGATGGTCCGTCCACCAAGCGCGGCGGGCCGGCGGGCATCACGTCGGCCCCGCGCATGCGGGTATGGTCCTCGTTTGCGCACAGGCGATCTCGGGCCAATACGTCGGCCGAGCGCACGCGGGATGGCCTACCACCCGCGGAAGCCACCTACCTTCCGAAGATCGAACCCGACCACAAAAGATGACTCGTTCACGAGATTCTCACTGATGTCGCGAATTTCCTTGACCAACAGCGCGGGAATGACCCCGCCCTCGGGATACAACCAGTTCGATCCGACCGAATGAAAACAGGTACTCTGTCCAGAATTAGTGCAGGTCAACAAGT # Right flank : CCTTTCCGAAGCGGTCAACCGTCAGGAGCCACTCCTCGGCACTTGTCATGGGCTCATTGCATCATCATTACCCGGCGGAATCCGAACGATTTTCGCCGATCCGGCGTTCTCGACCACGTGCCCGCGATCCTCGTCGGTCGTTCACCCCGCAAGAGTGATCCGATGTCCGCAACGGCACTCAGCGATGCCCTCAACTCGGCATGAGCGGATGTTCGCTATACCTCAATGGTTGAGGCACGCCTACCGCGGCGGATACCGGTTGTCTCCAGTTGTCGCCGTTTAGCTGATCTGATCGGTATCGGGCTGCGCGAAGCGGGCGACGGCGCGGGCGACCGCCTCACCCATGGCGGGGCTGCCGGTGTGGCCGGAGTCGTCGATAACGTGGAGGCGGGCGTCGGGCCAGGCATTGGCGAGTTCCCACGCGGTTTCGAGCGGGGCGCTGAGATCGAGGCGGCCGTGGATCAGTTCGCCGGGGATCCCGGCCAGCCGCCCGGCCTCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGTGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //