Array 1 108702-107757 **** Predicted by CRISPRDetect 2.4 *** >NZ_APZW01000045.1 Escherichia coli P0302293.7 gecP03022937.contig.44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108701 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108640 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108579 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108518 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108457 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108396 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108335 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 108274 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 108213 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 108151 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108090 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108029 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107968 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107907 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107846 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107785 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125696-124203 **** Predicted by CRISPRDetect 2.4 *** >NZ_APZW01000045.1 Escherichia coli P0302293.7 gecP03022937.contig.44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125695 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 125634 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 125573 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125512 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 125451 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 125390 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 125329 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 125268 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 125207 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 125146 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 125085 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 125024 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 124963 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 124902 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 124841 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 124780 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 124719 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124658 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 124597 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124536 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124475 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 124414 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 124353 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 124292 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 124231 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //