Array 1 39850-40480 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHH01000004.1 Lactobacillus sp. ESL0233 Ga0226843_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39850 36 100.0 30 .................................... TCCCCATAGCGACAACTTGCTGCAAATTAC 39916 36 100.0 31 .................................... CGCAAACCTTATGCAAGAACCCCTAGCCGTT 39983 36 100.0 30 .................................... ACTGCTGTTCTACGATCACTATTTAAGTTA 40049 36 100.0 30 .................................... CGGTGGCATGCTGCCACGGCACCAGGCAAG 40115 36 100.0 30 .................................... CAGGACTGCCTTGGAGCACCATCAATAACT 40181 36 100.0 30 .................................... TAAAAGCTTAGAAAAGTCACTTAAAGAATT 40247 36 100.0 30 .................................... TAAAAGCTTAGAAAAGTCACTTAAAGAATT 40313 36 100.0 30 .................................... TAATAAAACAATTAAAGAACAAGCGAGGTA 40379 36 100.0 30 .................................... TGACAGAAGTTGAATTTGCTGGCACACCAC 40445 36 97.2 0 .................A.................. | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.7 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : AGTGGCGACATAATTAAAAAATATATGTCAAATATCTTGAATAGTTATATTGCTAATATTAATGAAAATAATCGAAACCGAATTTTTACTGCATTACAAAATTTAGAAGTAGCTATTGATGATTCACTAATGCTGGAAGACTTACCATTAATAATTAAGTTTGATGATGATTTGAAAAAACTATTGAAATTTTTTGATTTACATATAGATTATGAAATTACTAAGAGTCCCTATGCTATAATAGAAATGATTTTTAAAATTCATCAATCATGTAACTTGAAATCGATCCCTGTGATGTGTAATTCAACACACTATTTAGAACAGGATCAATTGCTAGAGTTATCAAGTTTAGCCAAGCAAATGAAGATGATGGTAGTTCTTTTAGAGTTTGCTTCCCCAGATTTATTGGTTGTACCTGAGGGTGTGCAATTTTATTATATTGATCAGGATCTAATCGATTTGTACTGACATCTATATTAAAACTTTATTATAAAATATCG # Right flank : CTTGCAATACTTTGATTGTAGTTTAAATAACGTTTTAAATGGTAGTCAGAGCATATTAAAAGAACTCAATTCGCAATGACGGAATTGAGTTTTTTTAACTGATTTTATTTACCTAAAAACTGATTACTTTCAACTTCACGGATAAAGTCGGCCAGGTGCTTGTAATAAACATCTGGATTATCAACCATGTGGTGGTGCCCACCATCTGGCGTAGTTACAAGTTGGGCGTTAGGAATTTCTTTTTGCATAATTTTGGCTGTTGCAATTGGCATTGTTTCATTCTCACCAAAAGTAAGTAAAGTTGGTACTTTAATATTTTTTAATTGCTTTCTAAAGTGCCAGTCTTTCAATTTTCCAGTAATGACAAATTCATTATCGCCTTGAAAAGCATTATAAACAGCACTACCGCCAATATCTTGTAAATGGTAAAGTTTTGATGGCTGCCGCCGATCAACAAAATTAATATTAAGAATATTAACATCTTCTTGGTAACGTTGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 43706-44161 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHH01000003.1 Lactobacillus sp. ESL0233 Ga0226843_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43706 29 96.6 32 ...........A................. GACTTGACTATCAGAGTTACCATATTTGCTAG 43767 29 96.6 32 ...........A................. AGTCTCTGGTAATTTTGGCATTATTCATTACC 43828 29 96.6 32 ............................C GTTGTGTTTGATAATGAAGCCAATAAGTATAT 43889 29 89.7 32 ..........................GGC TAACGTTGTTTTAGACTTAAATAAGACAAAAT 43950 29 100.0 32 ............................. AGCACGAATTTTTATAAGCGTGAAGATATTGA 44011 29 96.6 32 ............................C AAATTAAAATGCGAATGGTACTTGAGAAACGG 44072 29 100.0 32 ............................. ATGGACGATGGCACAAGCTATTTTAGCCCGCT 44133 29 93.1 0 .......................A....C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GATAAAAATCAAATTATTTCTATTGGAGCAGTTAAAAAAATTAATGATAAAAAGTATGATAGTTTTTATAGATTAATTAAAGTTGATACTGCGGTGCCAAAGACGATAACTGAATTAACCGACATAACATTAGAATTATTGAAAAAAGAGGGGGTTACTTTAGATAGAGCTCTTAGAGAACTAACTGAGTTTATTAGTTCTGCCACGATTATTGGCTATAATTTACAGTTTGATTTATCCTTTCTCATGTCCGGCTATAGATCTGTAAATATAAAAGAACCGGATAATGAAACTTTAGATTTATTACCTGTAGTTAAAAAAGCAGAAAAATTTATTGATAATTATCGTTTGGCAACTATTTTAGATTTTTATAATATTAAGAATTCCAAGCCACATAATGCACTATCTGATGCTAAGGCTACGTTGCAGTTGTTATATAAACTAATGGAAAATGGCAATATCAAAGTTTAAAAATAAGGGTATAATAAGGATCTTTTACT # Right flank : CGACAATGGTCAAAACGTATTGATGAACTTAGTGGTGTTCAAAGTGACTTGAATCGGGTTTTTGTTGGTAAAAATGTGCCTAATATGCTCTACAACTTTAGATTAAGTATTTTTGAGCATGTGCTAGATTTGGTGGTCTAATTCTTGGCTAACGATTTTTTGATCACTTAATTCAACTGCTAATGCAACTCTTTTATTTTTTTGTTGCAGAGTTAAGGTTTGAATTTGGTCAACGTCACGCATAACCTGCTGGTCTTTGTGGGCTTTTTTTAATTGATTGGTTAAGCCCTGGTTCACGTTCAATGCCGTATTTATGCGCTAGTTCAGTTAGGGCAAGAGAAGGAGGGGGTGGCTTACGGTTACTTCCAGCTGTGCGTCTCTTAAATGCGCCACAGGGGGCGAAGCAGAAAAAGCTGGCGCAATTTCTGCTTAATTCAATTTTGGCAAAACTGCGTAATGTCTAAAATTTCATGACGAAAAAAATAAACAAGAGTCGGCGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : GTGTTCCCCACATATGTGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //