Array 1 7895-6848 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JSVZ01000003.1 Actinobacillus pleuropneumoniae strain 518 contig_chr00003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      7894	    28	 100.0	    32	............................	GAATTAAGCACAGAAGCACCTACGAACGACTT	
      7834	    28	 100.0	    32	............................	GATTGACAGCGACTGGAAACCAGCAGGCGCAA	
      7774	    28	 100.0	    32	............................	TGTTTTAGCTGCTCAGCAATCGTCTTTTTCAT	
      7714	    28	 100.0	    32	............................	AGACTTCTCAAGTAAAATGACTTTTTCAGCAA	
      7654	    28	 100.0	    32	............................	TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC	
      7594	    28	 100.0	    32	............................	TACAATTTTACGCACACGCTTAACAATACTTT	
      7534	    28	 100.0	    32	............................	TGCCACATTTAACCGCTCTTGCGTGTAGATTT	
      7474	    28	 100.0	    32	............................	AAATTGTGCTTATCTTTAACTTCACCGGTTTC	
      7414	    28	 100.0	    32	............................	TACGCCTGAACCCTGTCCTTTCCCATTACCGT	
      7354	    28	  96.4	    32	...................A........	TTATGCTGATAAAATGATTCTTAAAGAAATAA	
      7294	    28	 100.0	    32	............................	CTACGGGTTGGCTACGCCAAACCTTGACAATC	
      7234	    28	 100.0	    32	............................	ATATCCACTAATAAAAGTATGGCTTCGCTTTC	
      7174	    28	 100.0	    32	............................	TTTTTAAAGGCTTCTAAAATCACTGAAGAAAC	
      7114	    28	 100.0	    32	............................	ACACCAAAACTATGCCGGTAATCTTTATTTAA	
      7054	    28	  96.4	    32	........................T...	ATTCGCCCCGACGATAAATTTCTAACTGCTCC	
      6994	    28	 100.0	    32	............................	AATGTTGAAAACACTCGGTTGGTGGGGGAAAA	
      6934	    28	 100.0	    32	............................	TCTAGTAAAAGTCCAAGCTGATGACTGACTGC	
      6874	    27	  89.3	     0	.....................C-.C...	|                               	
==========	======	======	======	============================	================================	==================
        18	    28	  99.0	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA
# Right flank :  TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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