Array 1 287678-288127 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOO01000001.1 Photobacterium iliopiscarium strain ATCC 51760 CFSAN065433_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 287678 28 100.0 32 ............................ ATGGTTATTACTTCTAACCATGCTTGTCGCAT 287738 28 100.0 32 ............................ AAAAATTACCGAAAAAAGCAAAAATAGATTTA 287798 28 100.0 32 ............................ GTAACGGAAAGGTGATTGCTGATGCTACTAAC 287858 28 100.0 33 ............................ GTATACAGTTCTTTTTCGGCAATAATGATTTAA 287919 28 100.0 32 ............................ AATATATCCCCGCCCCTGATGCGGAAGAAAAT 287979 28 96.4 32 ...................G........ AAAGTCCGTTTGCTGCTAATAATGCCTTACTT 288039 28 96.4 32 ...................G........ GCAAAACGCATCAAAACCTGACACTTGCACAT 288099 28 82.1 0 .................T..T.T..C.T | C [288118] ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.9 32 GTGTACTGCCGAGTAGGCAACTGATAAC # Left flank : GAAATGCAAGATCTTGGTTACTTCGATATATCAAAAACATTGATTGTTCCAATTGAATGTAACTTTGCATGTTTTAAGCGTTATCAAAAGATCGACAAATCGTCAGCGGCTGGTTTTCATCGAAAGATAAAGAGGCTTGCTAAAAGAGCGCATAATAGAGGTGAGGTTTTTGATAACAAGAAGTATAACATTTACAAACAATGCGATATTGGACACTATCATTCATTAGCAGAAGAAAGTAAAAGTAAAGGGTATGGATTTAGATTAAACATTCAAAGAACTAATGAAATCAGCATCAATAATATACCTATTTTTAGTAGCTATGGATTAGCAAACACAGCACACGCATTACAATCTGTTCCCATAATTTAACCCTTTTATTTTGACTATTCCTAATCTATTGATTTTATGGGTTTTATAATCTAGCAAAAATTTAGGGTCTCTTATTGGTTTTTTATCTAACCATCTGATAATAAAGAGCTATATTTAAATTAGCTACA # Right flank : TTAACATTGTAGTTATATCCACAAACAGCCAAGAGGCTGTTTGTTTTAATTGCGATTGAGGACTATAATCCCCATTACTACTGAAAAGTAGCTGATAAAAAACGAGCCACATTTATACGAGTTCAAGATCAATATACTGCTGAATAAGTAGATAATTAAGGGTATATTCTTCCTCGCATCACACTCAAGTACAAAACTGATTGATATACTTTCGAGTGTGATGCTTATTTTCTAAAGATTAACCCCATTTACCTAATACAATTCCCCCCCTATCCTATCCTACTTCAGGTTTTTCAACGTAAATTTTGTAACTCGTTTATGCCCCATTACTGTTTAGATCAAATACTCATTCATATCGTATTAACATGATTTTGGATTAGTTTTATTTATATATTCATAGTTAATTATGAGTTACATAATACATTTCTTACTTTCTACATTTCAAATAAACACTTTGAAACAAAATAGTGCAACCAAGATCATGATATTTATGAATTAAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGAGTAGGCAACTGATAAC # Alternate repeat : GTGTACTGCCGAGTAGGCAGCTGATAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 3679-3172 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOO01000005.1 Photobacterium iliopiscarium strain ATCC 51760 CFSAN065433_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3678 28 100.0 32 ............................ AGGGGATAAATGTATTAGCCATAAGTCCCCGC 3618 28 100.0 32 ............................ TGCTACTGGCTCTATATATGCACCATTAGAAA 3558 28 100.0 32 ............................ TGAACGTTAACGAAGTCGCTATTTTTTGGGTT 3498 28 100.0 32 ............................ GCTGGATAGGCGCAGCTATTTTAATACTTGAA 3438 28 100.0 32 ............................ AATGTTGAGAACTTAGCCGCAATACTTCCATT 3378 28 100.0 32 ............................ GTATTTCAGCTGACATGCTTGAATACTCAGAA 3318 28 100.0 32 ............................ GTTCTGTATGATTGGCATAGTTTAGCGGCTGC 3258 28 100.0 32 ............................ CATAAGAAACAGTTGAGCAAGCAAGAAGATGA 3198 27 85.7 0 ....................T..T-..T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCGGCCTGAGTAATGGACGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAATACGCGGCAATGCTGTAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTAGCGAGGATTTGTGGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : TACTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCCATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGGTTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCAGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATCTTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12499-14925 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOO01000005.1 Photobacterium iliopiscarium strain ATCC 51760 CFSAN065433_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12499 28 100.0 32 ............................ AGCATCTAGATAAGCCGTCTTAGCTTCTCGTA 12559 28 100.0 32 ............................ ACGCCCGTTGTATATTGAGTCAAAGTCAATAC 12619 28 100.0 32 ............................ TCTTAGCTTTAATTCTTCTAATATTTCGTCTA 12679 28 100.0 32 ............................ GTTGATATGAATTCGAAAGAGTTTCGATACAC 12739 28 100.0 32 ............................ TTCACAAGACAAGCTGAATCAAAAAAAGCTTT 12799 28 100.0 32 ............................ ACCGATAATTCCGTTAACCCACGGATTGTAAC 12859 28 100.0 33 ............................ AATGAATCATCATCAGTCTTTTTAATTTCTGGT 12920 28 100.0 32 ............................ AGCTAGTACTTGACGGATTTAAACAGGCGTAC 12980 28 100.0 32 ............................ CACTAACATACCACCTCTTAACCGGTCTCAGC 13040 28 100.0 33 ............................ CTTTGCCATTACTTTATTGAATTGGCTTAAACC 13101 28 100.0 32 ............................ TAGAAATAAGGGGCTTTTTTGTGTCTATATAT 13161 28 100.0 32 ............................ ATTAAGAAACCAAGCTGATTTATTTAGTGGTT 13221 28 100.0 32 ............................ GTACATGGTGGTAATAAATCTCACACTTATTT 13281 28 100.0 32 ............................ ACTGAAGAATGCACCCAATGATTCAGCATCGG 13341 28 100.0 32 ............................ TGACGGTGCTGAAAAAAGCGCTGGACTACGAA 13401 28 100.0 32 ............................ AGAGTATCAGAACGACAACTAAAGAGTTTTAT 13461 28 100.0 32 ............................ TTTCTGGTAATCACTCAGTAACCATTAAAGTT 13521 28 100.0 32 ............................ GAAAGCATACCGGACACAGCAGCAACAGCGCA 13581 28 100.0 32 ............................ AACAAAGTGAGAACTAACTTTAAAAAGTTCAC 13641 28 100.0 32 ............................ TTTTGTGGCGAACTTTTTACGAATGCGCTTAC 13701 28 100.0 32 ............................ GCTAGCACCCCATGACACGGCATCATGCGCGA 13761 28 100.0 28 ............................ TGTGACTTCTATAGCTACTCCCCAATCA 13817 28 100.0 32 ............................ TTAGTAAAGGTTGGCTTAATTGCCACATCAAA 13877 28 100.0 32 ............................ ACAAAACAAAACTTCGCCAAACAGATAAATGA 13937 28 100.0 32 ............................ TTATCACTTATTGCTAGTGAACCATCGATTTT 13997 28 100.0 32 ............................ AAGACGTAAACGGAATTCAGAAGAAACACTAT 14057 28 100.0 32 ............................ ACATCAGGTAATGACATAAGATTATCTTTTTC 14117 28 96.4 32 ...................A........ GCTATATTAAACATAAACTAGCCTTATCACTT 14177 28 100.0 32 ............................ ATTCATGTCTGCAATTTCACCCGTCATACGTT 14237 28 100.0 32 ............................ GTCATCTATCGGTGATTACATCCTCAACCTTA 14297 28 100.0 32 ............................ AGATAGTAATTTAGCAAACGCAAAATTTAAAC 14357 28 100.0 32 ............................ CAATTACTATCAGGGGCGGCTGGCACTGTAGT 14417 28 100.0 32 ............................ ATATTAAAGGGTTTAACGCTGACGTGTTGAAT 14477 28 100.0 32 ............................ GTATCCGCATGCAAGGTAATGCGCCTGAAGAT 14537 28 100.0 32 ............................ TGTCGGGGATGGCTCTGCTAGCTTAAGGTCAT 14597 28 100.0 32 ............................ AGACAGCTCCATCATGATGCCCTGATGCACCC 14657 28 100.0 32 ............................ GAATGCAGCGCCAATGATACCGTTGTAATTTG 14717 28 100.0 32 ............................ AGCTCAAACGGAAATTGCCACTGTTGACATGA 14777 28 100.0 32 ............................ TGAAGATGGGAATGTGTTTAAAAACCTATACA 14837 28 96.4 32 .........................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 14897 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [14921] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCATGTAACGACTATTACAGAAATTCCGAGTGACATCAAAGGTTATCAAACCGTTAAGCGTGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCTATTCCTGATACAGCAGAGCGTAAGTTAACTTTGCCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTGATGCGAGTATTTATTGAGCACAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATCAGCAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTAAATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTCAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAGTTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATTAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATGGGCTGAATGGATAGTTCGTACGTTTATTTGCTTATGGCGTATCAAGACTGAAACAGTTTATGCCATTATATAAAGGGGAAGGGATGTGACAAATTATGCTAATTTTATAGATTGGGTCGGCTAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //