Array 1 1052113-1050524 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMH01000001.1 Photobacterium lutimaris strain JCM 13586 CFSAN065509_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1052112 29 100.0 31 ............................. CATCCAGGCCGGATACCGCGAGCATCTTGTC 1052052 29 96.6 31 ............................C TAGTTGCGCCATTACTTTAATCACTAACAAT 1051992 29 96.6 31 ............................T TATTGCCAAAATAATTCAGGGGGCAGCAGAA 1051932 29 100.0 31 ............................. AATAGTGAAATTAGGAAAACCACTAGAGCGC 1051872 29 96.6 31 ............................G TACATTCTCGCTAAGGCTAAACGGATTCTAC 1051812 29 100.0 31 ............................. GCTCCGACCGCCACCACGAAATTCTAGTTGA 1051752 29 96.6 31 ............................T AGTACCGGAAGCAAATAACATTGTAGAACTT 1051692 29 96.6 31 ............................G CGAGATGTACCGCAAGGCGCTGAAAATCTTC 1051632 29 100.0 31 ............................. AGACACGGCCAATAGCAATGTGGCTGGTCTT 1051572 29 96.6 31 ............................T TTTGTAAAGAGACTAAAGCTGTAGCGTTGAA 1051512 29 100.0 31 ............................. GTTTCCTGATAGTAGCGCTCAAAAGAATCAG 1051452 29 96.6 31 ............................G CGCTCAAACTCGGCAAACACGGCCAGCAGCT 1051392 29 100.0 31 ............................. TGAGTAACGAGTTCTACCAGCTGCCTACTCA 1051332 29 96.6 31 ............................C TGGTTCGAGTTTATCAATAACCCTAACGAAC 1051272 29 100.0 31 ............................. GCCTCAGCTTTTCGGAATAATTCATTAATCT 1051212 29 96.6 31 ............................T CGCATCGAGGACTGTCACCGGACACGGCTTT 1051152 29 96.6 31 ............................G CCGATAATTTCACCGCCACTTTCTAAGATAC 1051092 29 96.6 31 ............................T CCATATAGATAGTGTCATTATCCCCGTTCCC 1051032 29 100.0 31 ............................. GCGACACCGCCTACAGTTAAAGCCAAACCAT 1050972 29 100.0 31 ............................. TAGCGGAATTAATCGCGCCGTGGTCTGTAGT 1050912 29 100.0 31 ............................. AGGAGCAGGGCGAGGAAGAGAAAGCCGAGGC 1050852 29 96.6 31 ............................C AAGGCAACAAGGCTTATGAGGCTGGCTACAT 1050792 29 100.0 31 ............................. CGGGTGCGAAGGTGGACGTAATGTTCCTCCT 1050732 29 100.0 31 ............................. ACCCGCGTCGATAACATAATGTAAATGCATA 1050672 29 96.6 31 ............................T GTTGCTCGGTTACTTCGGGCGTGTCGAAAGT 1050612 29 96.6 31 ............................T CGCGAGCAAGATTGAAGATGATTTGCCGATC 1050552 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =============================== ================== 27 29 98.1 31 GTTCACCGCTACATAAGCGGCTTAGAAAA # Left flank : TTCGGGTGTTCGGGATTGACCGAGTTTTGATGGATATGCTGCTAACTCAGATGCAGCATCATTTCTTTTTTCGAGACTACACGGATGTGAGTCCGATTAATACCGTGCCCGAAGACTTTAAAGGCCCCTATGTCAGTTATGAACGTTATCGAGTACCTAACCTACGGAGTAACGAGGGCAAGCCCCACAGGCGAGAGAAACGACTCTTAAAGGCAAAGCAGTTACCTCACTTAAAGGTGACTAGTAATGGCAACAAGAAAACTTTTTTGATCCCAATTTTGATGATAGAAGTGGACGGTAAAACGCCTTTCACACCAAATGGGTATGGTCTGGGAAGTAGCGCGAATAAAATTGCGTTGCCCTATGTTTAACCCTTTTTTTTAGCTCACATGTAAGTGATTGATTGTTAAAGTGTGAATTAAAGCTCGATAAAAAAGGGTTTTTTCGATGTTATTGGTGTAAGTGTATGTCTTAATATACTTTTTATCATTTTGGTTTCA # Right flank : GCGCACCACGTTTTTCTCGGGGATTGCCTCGGTTCACCGCTACAATGACATAGCAACTTACAGGTAGGGGAATGATCATAGTATGTCTCTATGTCTCTATGTCTCTATGTCGAATTATTGATAAATTGGAAACACTAGGGAAGATCACGGGCATCGTCTTCAAGACTGGCTTCGAAATGCGATAGGGCATGTTCTAGCTCTTCCGTTAATAATTGTACTTCTTCATAGTTTCCCATTTTAATTGCACTACGTAACTTATCCCTACATTGTATCAGCTTCTCTCTTGCCGACTGTTTGGCAAAAAGGCTTCGTAGACTGTCCGCTTGATCCATAAATCAACCTCATATAAACCACATCCTAAGATCAGTATCTCTGCGGATTTTTCTATAATGCTATGTGTGAGTGAGCTATTGTGCTCCTATGCAAAAGATATCATAGCGATATAAAGCTGTACCAAACATGATGTGATTGGTTTCACAAATAAACGATTCAAAATGCTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTACATAAGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1068595-1070002 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMH01000001.1 Photobacterium lutimaris strain JCM 13586 CFSAN065509_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1068595 28 100.0 32 ............................ TGTTATCTATCAAATTAAGGCTTTTTGCCTCG 1068655 28 100.0 32 ............................ AACGCCGCTTCAAGCTGGCGACGACGCTGTTC 1068715 28 100.0 32 ............................ AACATGAAATGAAAATCCCCGTAGACATTAAC 1068775 28 100.0 32 ............................ TGATAGAAAAGAAATGTTTTGGCTGCTATGTC 1068835 28 100.0 32 ............................ CAGCAGGCGGTCAAAAGTTTATATATTCAAAT 1068895 28 100.0 32 ............................ AATGATTTCGCCAGCTAAATAAACGTCATGGT 1068955 28 100.0 32 ............................ ACTAATGTTAGCGGTCAAACGTCAATTAACGG 1069015 28 100.0 32 ............................ TCCACTTGCTTGCAAAGGTGCGCTACTGGTTA 1069075 28 100.0 32 ............................ GTAAGGGTTTACGGTGTATACTAATTACACAC 1069135 28 100.0 32 ............................ TCCAGCTCGGCATAATGACCCGCCATATCGCT 1069195 28 100.0 33 ............................ ATGGCGCTACACGAGGTGATGGAGCTGGCCAAT 1069256 28 100.0 32 ............................ TCGATCGAGACAATGGCGAACCAGCATTGAGG 1069316 28 100.0 32 ............................ AATGTCTTTCTGTGACATTGGAATAACATTAT 1069376 28 100.0 32 ............................ TCTTCTAAGCGGTCTATCTCAGCACGGGCCGC 1069436 28 100.0 32 ............................ TGATTAAACTTTGCTAGCTCCATAAGCGAGCT 1069496 28 100.0 32 ............................ CAGCGAAATTAAACTAACTATCGACCGTTTCC 1069556 28 100.0 32 ............................ TCAGAGCAAGCCCCATCCCTACAAGTTATCGA 1069616 28 100.0 32 ............................ TTCAACATATTTCCCACTCCTGCGCTTAACGT 1069676 28 100.0 32 ............................ CAAGACTTGGTTAGCGTCGAGGGAAAGGTAGG 1069736 28 100.0 32 ............................ ACATATCAATTAGATTATTCATTGTTCCCTCA 1069796 28 100.0 32 ............................ ATGCAACACCATGCTTAAAGTGGCCGTATTCT 1069856 28 100.0 32 ............................ ACCCGATTTGCTCTGTTCTAATTTCACTTTTT 1069916 28 100.0 32 ............................ ATCGAGAACAGGGCATAACTGGATAATGCTTC 1069976 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 CTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCAACTAATGGCATTACCATGGCTAAAAGGACTACGCGATTATATCAAGGTGAGTGCAGTACAAAAAGTGCCTGCCGACATCAAGGGATACCGAAGCATTTATCGTGTGCAAAAAAAATCGGTCAATAATCGCCGTAAGCGCTCGATTACCAAAGGCTGGTTGACGGAAGAGGAGGCGCTTCATTGTATTCCTGATGAAGGGCAACAGGAACTAAAACTACCCTTTCTGCAATTTAAGAGCTTATCTAGCCGCCAAAATATGCGGGTTTATGTGGCGTTAGGCGAGCTACTTTCTGAACCAAAGACGGGGCCAATAAACAGCTACGGTTTAAGTCGAGTAACAACTGTACCTTGGTTCTAATCTACTAAACCCTTTTTTTTACAACACCCATAAGTCACTGATTTTAAAATTGGCTTAAGATGAAGAAAAAAAAGGGTTTGCTCGCTGATTTCCTTATAAGCTCTTTAAAAATAGAATGTTAAACAGTATTATCTCCA # Right flank : AAAACCTGTTTCAGCTCAATCTCCAATTCATACTTCCCCAGAGAGGCCTGCAACAAAGTACAAAGCAGAGAAAATGCTTCCAATGATCAAGGATACGTTACAACACCAATTGCGTGAATTGACCACATTATCACCCTATCGTCATATTCATCATAATTTGCTCAATGAGTTTCGCCTCCTGATCGAGAACAGCCCAGTAGATTCAAACGTTGCTTTATTTTGTAATGGAGGCTGGGGTCTGTAATTAATAGCCATTCAGTTGGATGAATTGATGGAGGGAAGGTGATTGAGGTCGCCCTTTTGACTCTGAAAGGCGCTGAGGGCTTCCGCCTGAAATACGGCCTAGACGGGATCTAGAGTATCATAAATGATGCTCTGGATGAGCTTGACTTGTATGTAGGCAAAGATCACTCTCCCTTGTACAGCCTGGGCATTGTTCTATCAAAAAATCTCCCGAAGGAACTATATGTTGTTTTATCTGAATAGCCACAACCAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //