Array 1 586-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXU01000024.1 Streptococcus uberis strain OLC4459-A4 k127_153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 585 35 97.2 30 -................................... TTCTATTAGCACGGACAATGTAAGTCTGTG 520 36 97.2 30 ........................C........... TTATTCATTATTATTTACCGTTCTATTGAC 454 36 100.0 30 .................................... CAATTCCTAATAGTTTTGCAACCATGTTGC 388 36 100.0 30 .................................... TTGATGCCAAAAAACGATTAGAAAAACTAG 322 36 100.0 30 .................................... TATAGAACGACCAGTAGAAACAGAAGTCGT 256 36 100.0 30 .................................... TCATTCTCTGATGTAACTTCTCATAATCAG 190 36 100.0 30 .................................... TAACAGCGCCGCACCTTTATTATTTCTCAC 124 36 100.0 30 .................................... TGCAAAATGCAAATGATTTTGACAACGGTA 58 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : | # Right flank : CATCTTAAGATTTTGGGAGCTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2-432 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXU01000004.1 Streptococcus uberis strain OLC4459-A4 k127_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... GTTCAGCTGTCATTAGAGCAACCGTGACAG 68 36 100.0 30 .................................... TGCAGGAAGTAAATTCCCAGCTGATGCTGC 134 36 100.0 30 .................................... GCGTGGGGTTTATTACAATAAACGAAAAGG 200 36 100.0 30 .................................... TTTTGACCATTTCCTTGCAGTTAGCAGCAT 266 36 100.0 30 .................................... TGGGTGGATTACGATTGACGAAGTTCCCGA 332 36 100.0 30 .................................... AAGATACCTTTGATAAAATTACTCGTTCGT 398 35 91.7 0 ..................-...............TT | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TG # Right flank : TAGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAAAAGCCTTAAAAATGTATGTCGAGAAATACATTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGTTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26-919 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXU01000021.1 Streptococcus uberis strain OLC4459-A4 k127_134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... AAATCCACTATACAACGTAATCAGGCCAAT 92 36 100.0 30 .................................... ACCCTATCGTGGAACCATTTGGCGTAAATG 158 36 100.0 30 .................................... CCTTTTTTAGAAAGCACAAACAAGGTTAAT 224 36 100.0 30 .................................... GTCTCGTTGTATGATCCCGTCATGACTTTT 290 36 100.0 30 .................................... ATCGATCGTAAGATTGCACTCAGAAAACTA 356 36 100.0 30 .................................... TTGATTTCTGGTATAAATGTGCCACCAACT 422 36 100.0 30 .................................... ATTAAAATCATATATATCATCTAAAGTTGT 488 36 100.0 30 .................................... TAGGCCATAGGTAATTGTTTACCATTGTTT 554 36 100.0 30 .................................... CAGATGCGCCCAACACCTCATCCGATAAAA 620 36 100.0 30 .................................... GCCTTACCAGCATTACCAATTTCATCAGTA 686 36 100.0 30 .................................... TACATCGCATTCATCATTCTTAAAGCTAAA 752 36 100.0 30 .................................... AGCATCCTTGCGTAGAGCTTAGGATTGTGA 818 36 100.0 30 .................................... TAATTGTCATAGTTATTTTCCTTTCGGCAC 884 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : AAGATTTTGGGAGCTAAACTAGACGG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 243-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXU01000008.1 Streptococcus uberis strain OLC4459-A4 k127_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 242 36 100.0 30 .................................... TTTTCTACAGAGTTAAGTTCACGTTTCTCT 176 36 100.0 30 .................................... GAACGCGACGGACTACCGAAAACCAAAGAG 110 36 100.0 30 .................................... TAGGCCATAGGTAATTGTTTACCATTGTTT 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : CTTTTGACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-498 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXU01000023.1 Streptococcus uberis strain OLC4459-A4 k127_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TAATTGTCATAGTTATTTTCCTTTCGGCAC 67 36 100.0 30 .................................... GTATGCAACTAAACATATCAGGAAAATAAG 133 36 100.0 30 .................................... ACGATAGCAGGAACACCTGCCAAGGCTGAT 199 36 100.0 30 .................................... GTATACCATCTCTAGTAACATTACTATTAG 265 36 100.0 30 .................................... TGCTCTTGATAGTATGTTGTCAAATTAACT 331 36 100.0 30 .................................... AAGGCTGACATATTTATCCTACACTTGTCT 397 36 100.0 30 .................................... GTTCAGCTGTCATTAGAGCAACCGTGACAG 463 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : | # Right flank : TGCAGGAAGTAAATTCCCAGCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //