Array 1 95086-98473 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ454982.1 Pasteurella multocida strain SH01 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95086 28 100.0 32 ............................ AGTCTTTCGCTTTGATTCATGATAGCTTTGGG 95146 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 95206 28 100.0 32 ............................ CATACTCTTACGACAAAGAGGTCTTGTTGAGT 95266 28 100.0 32 ............................ CCCAACTTCATCCCGTAGCATAGCTGAAAAGT 95326 28 100.0 32 ............................ ATAATGTCTCCTGTTCGTTCCATTATTTCAAT 95386 28 100.0 32 ............................ TCATTGAGAAGTCGCTTAGCGTTCGCTACGTC 95446 28 100.0 32 ............................ AGCATATAAATAATGTGCTGAGGTTCGACCAA 95506 28 100.0 32 ............................ CTGAACGTTCCACAGGTATGCTGTCTCAACTT 95566 28 100.0 32 ............................ ATTCATAGTATTACCACAAGAGTTCGATTAAC 95626 28 100.0 32 ............................ AGCGTGTAGAGAAGAAACATAATCACAACAAG 95686 28 100.0 32 ............................ CATAGTCGCTTCCTTTTAAGCAAATGCAAATT 95746 28 100.0 32 ............................ ACATCTCAATCGTAGTCTCAGCATCTGAAGAA 95806 28 100.0 32 ............................ ACCAACGGTAGTTTACTGGGTCTTGGGCCGAC 95866 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 95926 28 100.0 32 ............................ GGAAAGCGGACAATCTAAGCAGTTTGTTTCAA 95986 28 100.0 32 ............................ AAGCATACGATTGAAGGTAATAGGAGGTCTCT 96046 28 100.0 32 ............................ TATTGACAACTGTAATATTCTCTCTCTATATT 96106 28 100.0 32 ............................ AAGCATACGATTGAAGGTAATAGGAGGTCTCT 96166 28 100.0 32 ............................ TATTGACAACTGTAATATTCTCTCTCTATATT 96226 28 100.0 32 ............................ AAAAGGTTTCCTTGATAATACAATGCCTCATA 96286 28 100.0 32 ............................ GAGATGGTGAAAGCTATGTCTGATAAACGTTA 96346 28 100.0 32 ............................ TGTTATGACTTTATCATACGGTGCCACAAAGT 96406 28 100.0 32 ............................ AAATGGGGATAGACCAGAACACGTTAAGAACA 96466 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 96526 28 100.0 32 ............................ TTGAAAAGACCTATCTCCTGTTCACGCACTGC 96586 28 100.0 32 ............................ TAGTGGACGCTGATAACGGTCTTCCACTTCTT 96646 28 100.0 32 ............................ ATTCGCAGGCGTCTTGAGATGTTAGTGTCCCT 96706 28 100.0 32 ............................ ATTGATTCACGGATACATCTAAACATTTTATC 96766 28 100.0 32 ............................ TTTAGTTACTCATCTAGCCATTCATTACTCAT 96826 28 100.0 32 ............................ TCCGATAAGTCAACAATCATGAACGATGACTA 96886 28 100.0 32 ............................ TAGTCCGCCATATCCTCACCACTATAATGTGG 96946 28 100.0 32 ............................ TGTAAGAATAAGTTAACCATAATGTACTCCTG 97006 28 100.0 32 ............................ AAGTACAAATTAAGTACATGGAGAAGACTAAT 97066 28 100.0 32 ............................ ATAAAGAAGACTACGGGATTCAACTAAAGGTA 97126 28 100.0 32 ............................ TCAATCAGCCCAACATGTTGACCACTATTCAG 97186 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 97246 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 97306 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 97366 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 97426 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 97486 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 97546 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 97606 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 97666 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 97726 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 97786 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 97846 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 97906 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 97966 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 98026 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 98086 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 98146 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 98206 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 98266 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 98326 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 98386 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 98446 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 57 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173953-173565 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQMU01000008.1 Pasteurella multocida strain SH01 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173952 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 173892 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 173832 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 173772 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 173712 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 173652 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 173592 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //