Array 1 199920-200814 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORX01000012.1 Paenibacillus dendritiformis strain J27TS7 sequence12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 199920 32 100.0 33 ................................ TGTGTCAATATCCCGCAGACGAAACAAGAAATT 199985 32 100.0 34 ................................ TGTGGATTCTTGATGAGAAAATTCTATTTCAGGT 200051 32 100.0 36 ................................ TGGGGTAGGAGTCTCTGGTGGTTGGGCTCGTATGCC 200119 32 100.0 34 ................................ CGCATATTCAAAGGCACGTTGACCACATTCGGAG 200185 32 100.0 34 ................................ GAATTAGGCACGTTACAGGCCATCCTAGACGCTT 200251 32 100.0 35 ................................ TAACGCTCCAGGATCTTGTATGCCGGAGCAACAGC 200318 32 100.0 38 ................................ ACCGTATACATCAAGAAGTTAACCAATCATGGAGTCTG 200388 32 100.0 34 ................................ CGTCCGCAGGATATGCCAATGATTAAACTGCCTA 200454 32 100.0 34 ................................ ATCGATGCGTTCCCATTCGTCCGCTGGCATAGTT 200520 32 100.0 35 ................................ GCTTATCCCGATTTGCTTCCGGCTCCTCGGTTTGA 200587 32 100.0 33 ................................ GTTTAGTTACCAAGGCTTAAGCGGAGAACGTTT 200652 32 100.0 33 ................................ GTCGAACCGTGTCGGAGGTCGAGGAGTTGCGCC 200717 32 100.0 34 ................................ CTCGAACACTTGCCGGAGGATGCCGAGATTACCG 200783 32 84.4 0 ...........C.C.........A..G....A | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 98.9 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CGGCCTTTTGCGGCATATTTGCTTCCATGCTTTAACGTGGGGTCGCATTAGTACCGGATATTTTTATGAAGGCTTTGGCTAACCATGGCAGGCATACGCCAGGATATCCGACCGAATGCACTCTTTCTCATTATTGATATGAGATATTGCGTGTTCTAACTGTCTCCAAAGTTACCCATCACGACGAACGGCTGATTCGCTGCCTGATTGATTCTATCGGGAGATACGTATAAAAGTATCTTCTTAGCACACTTGTCCGTGATATACTAAGAAGTATGGTGCCGAAGCATGCCAAAGTTGGCCGAGACATTCGGACGCCCGGCCACTTCGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCATATTTATTGAAATATTATCCATAATAGTTAATTTATTTTGGTTTATTGAAGCTAAACTGATTTGTTTTCTTGAAGTTTTTAACCATGAAACGATTGTTTTGGTATGTTTTGTGCTCTTTTTCGCT # Right flank : AGGCATTAAAAAAGGCACGGGTGCCGAGAATGACCTACCTGCATCCTCGGCCAACTTATTTTTTTGATGCGTTCCCTCAAGACTCATACACATTCATTCTCGATATGCAGACGCCGATGTGAATCACAGCAGTACAGACATGCCTTATCGCCAGGAACAATCAAAAGGGGCATTCCAGCCGCATCGTGCCGGCGGGAATGCCCCTTTCCTATTATATACTACGCCTGCAGCGCCTGCTTGAACTGCTCGGTCAGAAGCGGCACGACCTCGAACAGATCGCCGACGATGCCATAGTCGGCAATCTGGAAGATCGGCGCTTCCGGATCCTTGTTAATCGCGATGATGACGCGCGATTGGCTCATGCCGGCCACATGCTGGATCGCGCCGCTGATGCCGCAGGCGATGTACAGCTCCGGCGTGACGACCTTGCCGGTCTGGCCGATTTGCAGGGCATAGTCGCAATAGCCCGCATCGCATGCCCCGCGGGAAGCGCCGACGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 130439-128882 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORX01000014.1 Paenibacillus dendritiformis strain J27TS7 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 130438 32 100.0 34 ................................ GTATCCTCGGCATACATACTTCGCGTGGTATCCG 130372 32 100.0 35 ................................ CCATTTTCTTTGCCGTGGGATGTTAAACGGGCATT 130305 32 100.0 34 ................................ TTTATCGCGGGCATGCTGCCTATCATGAGCTTTT 130239 32 100.0 35 ................................ CACTTAGGCCGCCCGAAAAATATTGGGGTAGGTGG 130172 32 100.0 35 ................................ ATAGGGACTATATGCGCGATTTGGCTAATGAGGCC 130105 32 100.0 34 ................................ TGCTGGGTCCTGTCGTGCATTTGGGTATGTCCGT 130039 32 100.0 36 ................................ TTTATTCCTGGCGTCGTGATGGTTGTGTCTGTGATA 129971 32 100.0 33 ................................ CGACCGGATTGTTTAAGGCGTATCCACGGGACG 129906 32 100.0 32 ................................ TGCTCCAAAATGCTGACTTGCAGATGTAATAT 129842 32 100.0 33 ................................ CAAAATACCTCTCAGGCGGCCTAATCGGAAAAT 129777 32 100.0 34 ................................ ATGAGTCTTGAGAAGCGATATGACAAAACTATAT 129711 32 100.0 35 ................................ AAAGATTCGTAATATCTGCGAACAATCCGGTCTTG 129644 32 100.0 33 ................................ ATTGCTTTAAAGAAGCCGTCCGGAGTGAACTTG 129579 32 100.0 37 ................................ TCGTTTAGCCGTGATATTCCACTGCTCGGGATGGCGT 129510 32 100.0 34 ................................ TATACGCCAATATCAATCGAGCCGAAACGGTGGC 129444 32 100.0 36 ................................ GTCCGCAAGACGGCGGCCATAGTCCGGCGACGGGGC 129376 32 100.0 33 ................................ TCCCAGCGCTGACGATGCCACTTCGTCAAATAT 129311 32 100.0 33 ................................ GCCCGGGACGGTCGTGTCCGCACCCGGTCTCAC 129246 32 100.0 35 ................................ CTCCACGCTGTTCCGGCCCCTCCGGGGGACGGCTC 129179 32 100.0 34 ................................ GCCCCAAATCACGGGCATGAAGCCGATTTTGTTA 129113 32 96.9 35 ............A................... ATGTAGATCTTTTCAATCGCATCTACCGGTTGCAC 129046 32 96.9 34 ............A................... TTCGAGTTTTCTTATCGGATCTTCCCGCATCTCA 128980 32 100.0 33 ................................ CGCGATGCAACTACCAAAGCCGCGACGCTAATG 128915 32 90.6 0 .......................A....CT.. | TA [128888] ========== ====== ====== ====== ================================ ===================================== ================== 24 32 99.4 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AGAAAGCGATCGGCGAGGGCGGCCGGACGTTGCCGCGCATGCTGTTCACGAACAAAACTTATACGTTCACGTCCGTCCACTTCCTCCAGAAACGAAAGGCGCCTGGCCGTTTTGCTGATAGACAGAGACTCATCGAGACAGACGGTATCCGGAAAGCATGGATAGATAAGGGAACGCTCCTTGATGGTTTTTGCTTGAAGCCGTCTGTCAAGGACTTAGCGCCACACATGTAGTATGATATACTCAGAATCAGGATAAAGATGTAATTGACAAAATCGCATTTATTCCGTGTGATGCCCAAAATCTCATTCCGTGGCAAGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAAGTTTATTTAAAAATAATCCAAATTAGTTATTTTAAGGTATTTTTTTCGAGACTGTTTCTGGTTAAATATCTCATTTTGTTCCGGAATAGTGGTAATTAACTGATTAATTTGTCATGTTTTATGTTATTTTTCGCT # Right flank : GCTCTTGAACGGCGGGATGTTTGGTCGCGTCCAAATGCGATGAAGCGGAATGGAACAATGCTTCCCAGTCCGGGCATGGTGGCTGTTCGTTGGAATGAGAGGCGGCGGAATCCATAACGCAGTATGCCTGAGCTGTCTCGCACTTTTTGTCGCATCGTGCCGGAGTGCAGGGCATAAATCAATGCATAGCCATAGACCGCTCCCTCTGTGCACTCTCCCCTTCGGTCAGAAATGTGCTCGTTCTGAGCGGATGGGAGAGTGCTCATAAGGAAGAGAAGAGGGGAAGAATGCCCCGAGCACAGAGCGGAGGATCGTGGGGTAAAAGGCAAAGAGCCCCGCCCAGACGACGGCACATCGTGTCTTGAGCGGGGCAACGGATTTTGCTCCGAGGGGATACGTTAAGCGTTGGTCCACCAAGAAAAGCTCCCCTCACGTTCCCGGTTTATTCGGAGGCGGGCAAGACGCCCTTCAATGGAATGTCGGTCGTTATGCGGCGCACT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22555-21794 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORX01000031.1 Paenibacillus dendritiformis strain J27TS7 sequence31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22554 32 100.0 33 ................................ GACAAAGTCAACATATTCCTGGACAGCGTTCTC 22489 32 100.0 33 ................................ TTTATCTGCATACGATCAGCAATTAGCGGATTA 22424 32 100.0 33 ................................ CTATCATTGGGAGAATCCCTTCTTGCTTAAGAA 22359 32 100.0 35 ................................ ACTTCAAGAGTCAATTCTTGTGGAGCGACATCTAC 22292 32 100.0 35 ................................ AAGAAACGATGGCCGACGCAGGGCGCGAAGGTCCA 22225 32 100.0 34 ................................ CCCTGGATCAATCCCCGTGCCGGGGGCGGGCTCG 22159 32 100.0 35 ................................ TTCAAAAGCACGAACGGCGAGTTCGTCTTTTACTA 22092 32 100.0 36 ................................ TTCCGGAACATCTCCGCGAAGATATGGTCACCGAAC 22024 32 100.0 34 ................................ CTTCAACCAGTTCATCTATATCGCCTCCAATGAT 21958 32 100.0 33 ................................ GTTCTTCCAGCTCGTTAAGGTCAAAATAAGACT 21893 32 100.0 34 ................................ CTCCGGGATGATCCATTCGTACTCCGGACGGAGC GC [21871] 21825 32 81.2 0 ...C......G.....A...C..A.......C | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.4 34 GTCGCATCCTACGCGGGTGCGTGGATTGAAAT # Left flank : AAAGGAACGAAGCAACTCGACAAATAGCTTTTTACTGGACAACAGAAAGCGATATGACGTATCGTGACGGTAATGAATCGATTGGCGTTCGTCGGATTCCGTTCCCATCGCTGCCCCTCCTTCCTGCCATCTTTTCCTTTATTATACCTGATTATAAGTGGTGGGGAACAGGGTGGGAATCCGGTCGAGTCTATGCTGTAAGCCATATTTGCCAACGCAACTTCTGGATGAGTGAGTCTGAAATGATCCATCATTTAGATCCTCCTGTGGTATACTGAAAAAGAAGTTAAGAGCCTGTTTGCAATGGAGTAAAAAATCTGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAGAGTTATTGCAATGTTATCCAATTCAGTTTGTGAAAGTAAATTAGTTTAAAGTTATTTGAAGCTAAAACTCTCACTTGCCTCGAAATTTTAGAAAAAAATTGATTGTATTGTTATATTTTATGTCATTTTTCGCG # Right flank : GAAACCGTCCTTCGGTCTTGGGGCAAAGTCGATAATGTTTCCGATGCGCTACAAAAGCAAATTTTCTATGGCAATCCCGATTGTGAGGAGGCTGTCCCACAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATGTACAGATAAGAGAGTGGCAGGAAGACGGCGGACGGCAAAGCGGCGGAATAGGGATGGGTTGAGACGAGGTTGTGAGACGGAGATGGTGAAATGAATTCCTGCATGGATCAGGCTGTTGAGAAAGAAGTTTTGAGTAGGGAAATGGATATTTCCACCATCCTGAAAACTGCACCATTTCCCTAGACACGCCCATCCGGCAGTCGAAATCCGTAAAACTCCACGATTTCTCCAGACGCTCCTATTCAGTAAGCGAAATCCTGCATAAATACAGCAATTCGATATGGACGACTATTCCAGAAAGGGAATCCTGCAAAATTACAGGAATTTTTCCCGTTTCGCTTCGGCTTGAAGCAAAAGGGCCTAAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 111488-112185 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORX01000004.1 Paenibacillus dendritiformis strain J27TS7 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 111488 32 100.0 35 ................................ TTGTCTCCGATGGCTGCGGCCGCCTTGTGATTGCC 111555 32 100.0 36 ................................ AGCGCATCCTTGTTCAACTTGTTGACTTGCTGGCTT 111623 32 100.0 36 ................................ CCGCAAGCAATCGTGAGTCAGATAGATCGGTCCAGC 111691 32 100.0 33 ................................ AATTTGCCAAGCATTACCCACGTAACGCGGGTC 111756 32 100.0 34 ................................ AAGACGTTTTTTGAGATTGGATCGGCAATTGGTA 111822 32 100.0 34 ................................ GCCACCCTAACGGTTGTTATAGACCGTTAGACGC 111888 32 100.0 34 ................................ TTCAACGAGTTGGGCACGGTGCCTGGACTTTACG 111954 32 100.0 35 ................................ GCGAGATGATGCCGGATGTACGTCCGGTACAGGAA 112021 32 100.0 34 ................................ CTCGACCTCCGGTAAAACAGGAAGACGCCGCTCA 112087 32 100.0 35 ................................ TCGATTCCTTCGCCCATGTCTTCGGTGTGAATATT 112154 32 93.8 0 .....................C...C...... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 99.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GCCGGTTGGATTAATTTTTATCGAACTGGATGGCGAGGCGGGCTATATCGGACTCATCACCGATCCATCCTTGCGCAATCAAGGGTATGGAAAAGCAATGGTGCGTGAACTTATGAATCATCCGGAACTGCAATCCGTACATACATGGGTGGCTTGCATCGAAGCCGACAATAAGCCATGTCTGGCTTGCTTCAAGTCCCTCGGCTATGTGACTGACGAGGAGGAGCCGGACGAGGACGGATTTTATAATTTGGTATATGAACGTTCATAAGTGAATGCGGCTACAAGAAGATTAGACCTATTCAAGCTCTGGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATGAAATTTCTATATTATAGGAAAAATCCATCTTTTGGTTTGTGGCAAAGGTGAGAAACACCTGCTTAAGATTGATTTTATGGCTAATTTGATTCATTTAATCAGAACAGGTGCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TGTAGACCTCTCTAAGCAGTTCAAAAGCTCACATTGAGCGTCGCATTCTGCACGGACACATAGAAAACATGATGAAACCCAAAAAGCATCTACCCCCGTATCAAAAGATGACGTGGAGGCAGGATGCTTGTCTTTTTTTTGTAGAACATATGTTCCCTGACAGGGGGTTGTCACTTTCTTCAACCATAATAGAATTTATATCATCAGTACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAACAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTTTCTGCATTGAAGCGGACTGCGCTGGCTAGCATCCCGATCATCGTTTATTTGATGTGGCTTCCCCAATGGAAGTGGATCTTCTATGTTGTTGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCAGAAGAAGTTACGTTCTGACAAAGGAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 123927-124755 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORX01000004.1 Paenibacillus dendritiformis strain J27TS7 sequence04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 123927 32 93.8 35 ...........T.T.................. TCTTAGCGGCGCTGTTGCTGCTCCTAACATTCAAA 123994 32 93.8 36 ...........T.T.................. TCGGATGATAAGGCCTTGTTTAACGGCCTCTTCGAC 124062 32 93.8 36 ...........T.T.................. CTTCAGGGTATGTTTCGGAGCCGGCTCAGTCGGAGG 124130 32 93.8 35 ...........T.T.................. TACTTTGGGCTATCGGAACTCAAAGCCCAGCCCCG 124197 32 93.8 34 ...........T.T.................. TTCGATCAAGTCACCATCGGATTTATCAAATCCG 124263 32 93.8 34 ...........T.T.................. CGGAGGATGACGGCTTGACTGATAAGGTAGTATC 124329 32 100.0 33 ................................ TTTTTCGTCGCTTAAAAACGAAATTACGAATAT 124394 32 100.0 34 ................................ AGGCGTGGGGGATACGAGGACATCTCGCACTTTG 124460 32 100.0 32 ................................ CGCCGCCGGCTGCTCCGCCGTACAGTATCTCA 124524 32 100.0 36 ................................ TATCAGGCGAAACGAGGAACGATCAGTTTGGTTGAC 124592 32 100.0 33 ................................ TTCGAGTTTTGAGAGAAACCGACACCCATCGGA 124657 32 100.0 35 ................................ AGTTCCCAGGTCGGCTACCTTCTTGAGGGATGGGC 124724 32 93.8 0 ....................A...G....... | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 96.7 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTGGAAGTAGGTGGTATAATTTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGTATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAGTTCGCCAGCTTGAAGATCCAACTTATCGATATGATCGATGAACAGGAAGATAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGTGTGAAGGCATCGATCGATATGGAAGGGACCCTAATTTTCTAGTGCGAATGTGTAGTGCACATAAATTCCCCGGGGGATTCGCACCATGTTTTTTCTATATTATGGGTAAAACTATTTTGTAGGTTGAATGTAGGAGTAGGAAATAAGCAGTTTTTAGCTCTATGGATCAGTAATTTTGATTGATTGCGTCATATCAAGAGTGAAATGTGATTATTGCAATCATTTTTCGCC # Right flank : TGCGAACACATTCTTGGTGTCGATGACCGGCGTATCCGAGGCAGTATTTGATTCGGAATGCTAAATAGATTAAGAAATTTATTCTTTCCCAGCAAAAAGACGCCACTAAGCTTGCTCAGTATATTGCGGGTTCTGGTACATAAACACCTTTTTGACGGTTAGACATTGAAGTAGTCGGGTAAGATGCTTAAAGTTTTTAAAAAGGTTACAAAGATATAGTTAAAAAAATAGAAGCTATGCTTCAGGTCAGTTAGGACTTGAGGAATAGCTTCTATTTTTTATAGCCTTTATATTAATATTTCAATCCACGCCTTTTGGCGACAAAAACACTATAGCATTCATTGTAAGAGAGAGAGTGCATTAAAATCAACAGTTTCAAAATTTCAGAGGTTCTATATTTACAAATAACCCCATCTTGTGTAAGATGTCATTAATTAATAGTTCATTAAAATAAAAGCTATATTAAATGCACCAAAAAATTAAACTTAACCATCTTATGG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 262624-262256 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORX01000007.1 Paenibacillus dendritiformis strain J27TS7 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 262623 32 100.0 35 ................................ AAGCTGCCTCATCTCGGCTCGGTGAGCACGCCGGT 262556 32 100.0 37 ................................ GAGATGCATATCCAGCTCGGCAAACAGCACACCGACC 262487 32 100.0 35 ................................ CTGTGCTGTCAATTGGCTCATCATGTCCACCTCAC 262420 32 96.9 35 ........T....................... CAACTGGAAGGTAGCTTATCGCCACAGGTCAACAA 262353 32 96.9 34 ........T....................... ATAACCAACATACTCCCTCCGACGAGTCCTCCTC 262287 32 96.9 0 ........T....................... | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 98.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATTCATCTGGCTGACCTGCTGGTGCCGAATGGCTGCCCCCAAACCCTATAACCCGTTAGAGTCAGCGGCAATGATGTATTTCCTCGTCTTTGCCCTGTGTTGCCAGGCCCCAGGCCAACAACCGGGGCTTGCCCTCGCCTTAGTGCCCCCCAAGGAATGGATTACTCGTGGCGCAACGGCCGTTACCTTATCCCGTGACTCATGATATACTTAATGAGAGAACAAGTTGAGGAAGCGGACAGAATGAGGATAATATCCGGCCCCTTCGGCCCGGCGAGGAAAGCGGAGTCGTGCGATTTTGATGATTAGGCACACGACGGGTGCGAATGTGAAGCGCACATGAATTCCCCGGGACATTCGCACCATGGTTTTTACATTATTATCCAAATAAACCGAAGAAGAGTTATGGATTTAACGTAATTTTTGGTTCATATATCTATTTTATGGTTTTATTCAATCATACTTGAACGGATATTTTACACATTCAGTCAATTTTCGCA # Right flank : GTCTAATCTCACGTGAGCACGTCGATTAGCGGGTGGGGAAACTGCTGAAGAGGACGTCAGGCATGAGAGCATGTTATCTGTTTGAAGGTCACCATACCTCGCTTTTCAACCTCTCCCCACCTTATTTACATCAATTGAATATTATGGTAACGTACAAATAAAGATGTCTTGGAAGGGTGATGATATGGAAGCATCGTCGCTACAATATTCCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTTACACAAAGCCAACTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCCAAAATTGAAAATGATGAGGTAGAACGTCCTTCATTTGAAAAGGTTAATCCCATAGCTAACGCATTACATATACCTATTCGTGAAGTCATACAACCATATCTTGAAATAGGGCAAAAATCCGATGTTCTGTTCGGAATCTTACGAGAAGTAATCAAGGGAGATGGAGCGGATTTAACGGATTTAATTATTAAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCTTACGCGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //