Array 1 244383-243489 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CQAI01000002.1 Streptococcus agalactiae strain DE-NI-0017, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    244382	    36	 100.0	    30	....................................	TTATGCAAGCTGGTGATGTTGCTATTTTTA	
    244316	    36	 100.0	    30	....................................	ACGAGCTAACGGTTACCTAATCAGTCGCCG	
    244250	    36	 100.0	    30	....................................	TATCGATATTGATGATTTAACATCAATTAT	
    244184	    36	 100.0	    30	....................................	TTAATTAAGGTATTTATACCACCTTTTTGT	
    244118	    36	 100.0	    30	....................................	AGAGTGTGTCCAAGACCAGAGTTACTGTTT	
    244052	    36	 100.0	    30	....................................	CTATTGGTTAGAATTTTTTTACAGGAAGAA	
    243986	    36	 100.0	    30	....................................	TGCTAAAAGGTAAATTTAACATTCCAGGTA	
    243920	    36	 100.0	    30	....................................	TGTTTTAATCATCCAAAATATGTTGCTTAA	
    243854	    36	 100.0	    30	....................................	TCATCTGGTGTAACTTGTTCGGCCATCATC	
    243788	    36	 100.0	    30	....................................	TCTAAAATCAAGGAACTGAGAAAAAATAAA	
    243722	    36	 100.0	    30	....................................	TATTTGATAGCGGTAACGGGTCATATACAA	
    243656	    36	 100.0	    30	....................................	TGGTGGTATTTATAATGTACGAGCAAATCG	
    243590	    36	 100.0	    30	....................................	GATAAAAAGTGGGAGCTGAATTAAAAGGCA	
    243524	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  ATTTGAACGATTTTTATATTCCTGATATGTGTTTTAGAGCTGTGCGGTTATTATGCTAGGGCACCGTTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//