Array 1 4307-5068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABMV010000267.1 Proteus sp. G4399 contig267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4307 29 100.0 32 ............................. ATTTACCTGTTAAATGTTTTGATAGCCGATCA 4368 29 100.0 32 ............................. CGGTAAACATTTGCCGAGTAGCAGGAAAAGCC 4429 29 96.6 32 ............................A TCTGTTCCTAAAGATGGCACAACGTTAGGGGA 4490 29 96.6 32 ............................A GATGATGTCTTAATGACGATTTTGCTGTGGAA 4551 29 96.6 32 ..A.......................... TCAATAACAGCATGTATTAGAAATGATTCTGA 4612 29 100.0 32 ............................. ATGACGTATTTGTGTTTAAGGCTAACGTCGAC 4673 29 96.6 33 ............................A GAAATTCCGTATTTTATGCACACAATTTAAAAT 4735 29 100.0 32 ............................. TGACTTTAATTCCGTTTTCTTTTGCTTCATTA 4796 29 100.0 32 ............................. AGCAGAAAATAAAAATGATGTTAGATGGATTA 4857 29 100.0 32 ............................. GCCATTAGTGGCATTTCAGATAATGAACTCCC 4918 29 100.0 32 ............................. CCGTAAGTGACCAAAGTAACGTAGTGATACGT 4979 29 100.0 32 ............................. TGACTTTAATTCCGTTTTCTTTTGCTTCATTA 5040 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.9 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : ATCATCAAGTCTTCTCTCTTACTTGGTATGTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGTGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4983-4100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABMV010000050.1 Proteus sp. G4399 contig50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4982 29 100.0 32 ............................. GCATCTAGTGCATAAAGAAATGCACGAGCGTA 4921 29 100.0 32 ............................. CGAGTCCTGCATCACCTTTTAATTCATCACTC 4860 29 100.0 32 ............................. GGGATAACGGCGAACTGGCGGGTGTTTATTTG 4799 29 100.0 32 ............................. CGTTTAGTGATACAAAGGTTCAAATTGAACCG 4738 29 100.0 32 ............................. CAAAAAGAAAATGTGAAAAAAGGCGTTTCAAA 4677 29 100.0 32 ............................. AAAACTAATTTACTTAAAAAAGCTTCTTCACA 4616 29 100.0 32 ............................. GGTTCACTGACAACCGCATCGGACGCATTTAA 4555 29 100.0 32 ............................. TAATAGAGCGAGAATATGTTAACGAAAATTCT 4494 29 100.0 32 ............................. ATATCGCAGATACATTGGCAGGTATCGAGGGC 4433 29 100.0 32 ............................. CCTAACGGTAGCCTTTATCTCTTTTGCGGTTC 4372 29 100.0 32 ............................. TCACCAGCCACACCCAGTGGCAAGTCGTTATT 4311 29 100.0 32 ............................. TAAATAAACGAGAGGACTATAAAATGTATATA 4250 29 96.6 32 ...............G............. GGTTGAATCCCGTCTGGATCGGTAAACATGTC 4189 29 100.0 32 ............................. TTATCTGCTGTTTTTAGGTTTAAGCCCGTTGA 4128 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATTTTGTAATATTAAGTGGGCAATAAATTTTGAAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //