Array 1 705629-703552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGC01000002.1 Streptococcus equinus strain HC5 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 705628 31 100.0 34 ............................... ATCAACTGGCTATGATAGTGACGGCGGAATCGGG 705563 31 100.0 34 ............................... ATGACACTTAACGGTTGTCGCATTGGGGAAGCTG 705498 31 100.0 34 ............................... ACCGTTTTCTTTCATGTAAGTGAGTGCTTGTGCG 705433 31 100.0 36 ............................... CCAAGCTCGGTAGCTGTTACTTTCCCAGTACTTGCG 705366 31 100.0 35 ............................... ATTAATGAAGTAGGTAATGTCATTTGAAGTCATTG 705300 31 100.0 35 ............................... TATACAAGAGAAAGAAACACTTGATAAAGAAGCAG 705234 31 100.0 35 ............................... AACAATATGTGACTTAGACATTGATTTCCAGTCAG 705168 31 100.0 34 ............................... CTTTTACATCAGCGTCCTCTTTAAATTTTACAGG 705103 31 100.0 34 ............................... AAATAACATGGCTAATAAATTAATTAAAAAACGG 705038 31 100.0 35 ............................... GATGATTCAATGCGCAAGGTCGCAGCAACGTCTGG 704972 31 100.0 36 ............................... TATTATTAGTTCTAGTTTGTTCAGTTACTAGCCCAG 704905 31 100.0 34 ............................... TTGTGTCGATTATCGACATGGGCATGAACATAAG 704840 31 100.0 37 ............................... ACTAACTTTAAAGTCCTTGAAAATCAGCTTCCTAGCG 704772 31 100.0 36 ............................... AAGTGCGAAGTTTGGGAATAACAGAGAGGAGAAACG 704705 31 100.0 34 ............................... CAGACCGTCAACCTTATCTTGTAGGACCGATATG 704640 31 100.0 35 ............................... GCAAATAGACACACACAACTCTTTGATTGATTGCG 704574 31 100.0 35 ............................... ATTACGTTTTACTTCAGTCGAACTAAAACCCGTTG 704508 31 100.0 35 ............................... AGTTGATTTAAATGAATATTGGCAGTTAGATCATG 704442 31 100.0 34 ............................... TCAAATTCAAAATAAATCCATTAATGATTTGATG 704377 31 100.0 36 ............................... AAAAAGCTAACGAACGAGAAAATAATGAATTAGCTG 704310 31 100.0 34 ............................... TCTGAAGTTAAAAAGCCTTGTCCAGAAGCTATTG 704245 31 100.0 34 ............................... AGAAGCACATATGTACCACTAGAAAATGTCGCCG 704180 31 100.0 36 ............................... ATCTAGTAAAGCTTACATGCAAATGCGCAAGCAAGG 704113 31 100.0 35 ............................... TCGGTAAAATGCTACTTAACAATAACTTTATCACG 704047 31 100.0 36 ............................... TTAGTGCGTTTATCACAGCAAACAAATCAACAACGG 703980 31 100.0 34 ............................... TTTGTTAGGTTGGAAAGGTCCTTTCGAATTCTTG 703915 31 100.0 36 ............................... ATCAAATTCACCGTTGTAAAATGGTTTCTTAAGCAG 703848 31 100.0 36 ............................... AGCTCTGTAACCTGTAATGGTAGAGCCTTGAACACG 703781 31 100.0 34 ............................... CGAAAGATTGATGAACGTAATGCTTTCGCTAGCG 703716 31 100.0 35 ............................... AAAAACATTTAATTCAGGTGGTGACTTTGGATATG 703650 31 100.0 37 ............................... AGAACTTGGCTTACATTGATGAGCTTAACATTACACG 703582 31 87.1 0 ....C............AT....G....... | ========== ====== ====== ====== =============================== ===================================== ================== 32 31 99.6 35 TCGCACCCCATACGGGTGCGTGGATTGAAAT # Left flank : AAGACAATACGAGGAGAATTAGATTCTTATCCCCCATTTTTGATTTAGGAGTGATCTTATAATGATGGTTTTAGTAACTTATGATGTGAATACAGAGAGTGTAGAGGGACGTAAGCGTCTTCGGAAAGTTTCAAAATTATGTGTGGATTATGGACAGCGTGTTCAAAATTCTGTTTTTGAGTGTTCTGTAACTCCTGCAGAATTTGTAGAAATAAAGAACGAATTAGTATCGATTATAGATCAAGAATATGATAGTATTCGATTTTACCTATTAGGAAAGAACTGGCAAAATCGAGTAGAAACAATTGGGCGTGATAATAGTTATGACCCTGATGCTGGAGTCCTACTCCTGTAATTTATAGGCGAAACGAGGTCACACAAAAAAAGTTGGGACACTCGCGCTTAAAAAAGGTAAAATAGTACTATAAATGATTTTATTTATTAGAATAATTTTTTATCATAATAATCATTTATGGCATAAACGGTGCAATATCGCACCG # Right flank : TAACAGGCGGTTAGGTTTCCAAAATTTTAAAACCTTGTATTTCTAATTTTTTCATATAAATTAAAAGGAGTCCCTATGTCATTTGAATCAGATATTTTTAGAAAAAAACGTGTGGTGTTTGAACGCTTGGTGGCGTTTGGATTTGTGAAATCTCAGGCTGGATATGACTACGCGGAGCTGATTTTGAATGGCGATTTTGAGGTGCGAGTTCATGTTTCACTGGATGATCAGGTGTCAGCAAAGGTGATTGATACTGATTTAAATGAAGAGTATCTTGCTCTTCATGTGGCTGGTGCGAGTGGCAATTTTGTTGGGAAGGTTCGTGAAGCTTATCAAGATGTTCTTGAACGAGTGGCTGAAGCTTGCTTTGAAGCTCTGCCATTTGCCAGTGACCAAATGAATCGTCTTGCAAATCACCTAAAGACCACTTATGGCGATGATTTTGACCATCCTTTTGAAAAATATCCTGAGTTTTCTTCTTTTCGCTATCCTGAAAATCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 656030-656659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGC01000004.1 Streptococcus equinus strain HC5 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 656030 36 100.0 30 .................................... AAATGTTGGTTTCATCGACTCAGGGACGTT 656096 36 100.0 30 .................................... AACGAGGCTACTTAATGCGACGGTTAGACA 656162 36 100.0 30 .................................... CTAGTATTAGGTAGCTATCACGTATCATAG 656228 36 100.0 30 .................................... TCTTGGTCTTATAGACGGTGTCATTTAGCA 656294 36 100.0 30 .................................... AGGAGGTAACTACAACCATGTATAAAGATG 656360 36 100.0 30 .................................... TGCAAGTGCTACAGTACACAATTGATAGTG 656426 36 100.0 30 .................................... AAAAAAATTATATTTAATTCATCATTCTGT 656492 36 100.0 30 .................................... TTCCCAAACTTTGGGAATCTAACCGCCTGT 656558 36 97.2 30 ..............C..................... TATTGAAAGAAGAAGTCCCAATAAGTGTTC 656624 36 77.8 0 ..............C.....T...AAA...TCT... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AATTTTTCATAAAGAAGACGAAGGTTTTTGGGTAGAATTTCCAGGATTCGGCGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGAATGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAGGCTAACATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : CTAAAACTTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 657267-657632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGC01000004.1 Streptococcus equinus strain HC5 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 657267 36 100.0 30 .................................... AGCACGTACGCTTACATACCAACTGATAAG 657333 36 100.0 30 .................................... TTCTCGAAGATGAAGTTCATCGGTGCTATG 657399 36 100.0 30 .................................... TGTCCGCTTTTAGAACGGCCTCGACGGTGT 657465 36 100.0 30 .................................... ATTTTGAATTGATGGTAGAAGCGTTAGAAC 657531 36 100.0 30 .................................... AAAGCATATGACGCTAAAAACGTTTCGAGT 657597 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CGTTGTAGCTACTAAATATGAATATAACAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAACGCTTTCTGCAAAAATTGTAAAATAATTTGCGGTAGCTGATTTTAACGATATTTATCGCGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGCCAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //