Array 1 18565-17443 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMJZ01000037.1 Nonomuraea longispora strain KC201 NODE_37_length_50979_cov_20.7262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 18564 30 96.7 31 .............................T GCCCCCCGTCCTGGACGTGCAGGAGGGCCGG 18503 30 96.7 31 .............................C GCTCCTTCTGGATCTCCAGGCTCTTGGCCAG 18442 30 96.7 31 .............................A CGTCGGGAGTGAGGATTTCGTGCGTCGCTTT 18381 30 100.0 31 .............................. GCGCGGCCATATTGGCGCTTCGTCCGTTTTG 18320 30 96.7 31 ......................C....... CAGAAAGGCCCCCACATGTCCGATGTTCAGG 18259 30 100.0 31 .............................. GAAGGGCGTTCATCTGGTCGGTCACCTCGAA 18198 30 96.7 31 .............................A GCGTTCTGGCTGTGCTGACGGCGCTGGGCGT 18137 30 96.7 31 .............................T CCTCAGGGAGATCGACTTGCCTGTGCCCGCT 18076 30 96.7 31 .............................C GCCGGCACGCGCGGGAGATCATCGCGGCCTG 18015 30 93.3 31 ................T............A CCTGGATGCCGTCGAGGTGCTGATCCTCATC 17954 30 96.7 31 .............................T CGGGCAGGCCGTCAGCCTGCCGCTGCGGCTG 17893 30 100.0 31 .............................. ACGTCGGATAGTCCGGCCGGGTGCCGGGCGC 17832 30 96.7 31 .............................C ACGCCGCGCCGCACCGGCCGAGCCAGGCGTT 17771 30 100.0 31 .............................. ACGCCGCCTCGCTGCGTCTGGACTACTCGGC 17710 30 96.7 31 .............................T GCCGTACCGCCGCAAGGATCTTCTCGGACTT 17649 30 96.7 31 .............................A GCTGGAACCGCATCGCGTTCGCGGTCGGCGA 17588 30 83.3 24 ..A......A........A.....C...T. CGGCGGCGCTCCGCCTACCCCTCA Deletion [17535] 17534 29 76.7 32 AC..-.....T...........C....T.T ATATGACCGCGTCATCCTTGGCGACCTTCAGG A [17511] 17472 30 76.7 0 ........G.T......ATAC...A..... | ========== ====== ====== ====== ============================== ================================ ================== 19 30 94.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ATGCAAAGGCCGGGCTCGCCTTGCCAATGTCATGCGTCGTCGCCAACCACACCGCCAACCGACGCGCATCATCCAGGCCAGCCGGAAGACATTCCGCGATTGTCCGCTTCACTTGAAGGGGGAGCCATCGATCCCATAGAAAGCCGGCGACCATGCCGCTGTCCGCCATATGCCGCCATAGTGGTAACCACCCATCGGTGTCCCGATCATGCTTTGCCCAGACAGATCGCGCTTCTATGGACAAACCATCCGCAAAAGCCGGACGGGACTCGTCGTCGTGGAGCACAGGGGACATTAAAGTGCATCAGCGTGGCTCGAAACAGCTTTGCGCGAAACAACGCGAGACCGATCGCACCGGGCCCGAGTTGTCTAACAGTCCGCAGATATGCAGCATGGAACGACCAAACAGCAGCTTGATACACGAAATGACCGTTTCGTCCCATTCATTGGAAGTGCTCAATTTCGCGCCCCTACGCTGACAACGTCGCAGGTCAGCGAGA # Right flank : TCTTCCGACTTCTTCGCCTCTAGCAGCACCAGAGCAAGCAAGCGCAGGCCCGGCTGTCCATCCCGTGTGCCAAATGCGTGCGCAAGTTCCCTCCCGCAGCCCCGACGCATACCCATTGAGCTGGGAAAACTCCGTGCGAGCTCATCTGACTCCTAAAGCGGGTGCCGCAGGTTCGAATCCTGCCGGGGGCACGCATCTGACCAGGCCTTCTGCCCTCCGGCCTGCGGTTTTACGGCCGCAGGTCTTTTGCTTTGTGGACCTCGATAGGCAGCCGAGAGCGCCCGTATGCAGCCGTAGGACCATGATCCGGGGATATGGTCGGGATGATCTTGGCGGCGTTTTCCCAGGTCAACTCCCGTTTCTGGGCCATTCAGGTCTCCGGCAACCCACCACGATGCCCAAGCCCAGGACCAACACGGCCGTAGATCGTGCCATACACGTGCGCACACCCGAGCGTGACCACTTCAGCAGAGGCCGGACTCGGCCACCCCTCATAGGCC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28063-29068 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMJZ01000037.1 Nonomuraea longispora strain KC201 NODE_37_length_50979_cov_20.7262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 28063 30 100.0 31 .............................. AGCTGGAGGCCCTCGGTAGCGCCGGGTACGA 28124 30 96.7 31 .............................A CGGAGTCACTTGTACGTATTTCCATTGTCCC 28185 30 96.7 31 .............................C GCTCCTTCTGGATCTCCAGGCTCTTGGCCAG 28246 30 96.7 31 .............................T GCGCTTCGGGACGGGGCCCGTGGATCGCGCC 28307 30 93.3 31 ............................TC CAGGAGATTAAGGGTGTCTCCGAGGTCCTGT 28368 30 100.0 31 .............................. GCGGCAAGACGAAGTTCTGGTCGTAGCCGAG 28429 30 96.7 31 .............................T GCTCCTCCGGCGGCCACCCCTGGCACGCCCG 28490 30 100.0 31 .............................. ACGGCGATCAGCACGACGAGCGCACCCAAGA 28551 30 96.7 31 .............................T CCCGCGGTCGAAGGGTGCCGCTCTGGAGCTG 28612 30 100.0 31 .............................. AAACCGGCTGACGCGCGTACCCGGACGTGGT 28673 30 100.0 31 .............................. CCCGCGAAGCGGAACAGATCAAAGCGGCGAT 28734 30 93.3 31 ........................C....A GCACCCCCCACGAGTTGCTCGCCCGAGGGAT 28795 30 100.0 31 .............................. CCATCGCGCCGACCCGCTTGGACTCGGCGTC 28856 30 100.0 31 .............................. CACAGTACGTCCTCGACGACTACTCCCGCCT 28917 30 100.0 31 .............................. CACAGTACGTCCTCGACGACTACTCCCGCCT 28978 30 100.0 31 .............................. GGCTGGTCGGCCAGCACATCCGTCGCAGCTT 29039 30 93.3 0 .............A...............C | ========== ====== ====== ====== ============================== =============================== ================== 17 30 97.8 31 GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Left flank : TACGCCGATGAGGTGCCCTGGTGACCGTCATCGTGCTCACTCGTTGCCCCGCTGGCCTGCGGGGGTTCCTGACCCGCTGGCTCATGGAGATCTCGCCCGGCGTGTTCATCGGAGGGCCATCAGCACGGATCCGGGAGCAGCTCTGGCTACAGGTTCAGCAGTACGCTGACACTGGTCGCGCGCTCCTTGCGTACACCACGGACAACGAGCAGGGCTTCGCCTTCGCGACTCATGACCACAAGTGGCATCCCATCGACCACGAAGGACTCGTCTTGCTTCGAAGGCCGAAGGAACAGCAGAAGCAGCCCACGTCCGAACCGCCTCGCAACTGGAGCAAGGTGGCTAAGCGCCGTCGGTATGGGCAGCGTTGATCACGCCATGCGAACGGCAGTTCGTCATCGCTCATTGCTTGATCACTGAGGGGCATGGGCAAAATGTCCGATTCTGCGAAAGTGCTCGAAAATGGCCCTGGAGCCGGATAACTCCGCAGGTCAGTGAGA # Right flank : CCTCCGGGAGCCGGCAGTCCCGGACTGGACCGGTGCTTCCGCGCACGTGGGGAGCACCCCGCTAAGGGGTGGTATCCCAAACGAGAATGGTGCGATCAGCAGGCAGAAGCCGGACGCGTCCTCGCGGCGGCTTGATGACGAACACCGGGACGCCCTCGGGGATATCCAGCTCTCTACGCTCCTCGGGTGACGGCATGCGAGCCGTCACCTCAGCGGCATGTTCTACGGCCACCCGCTCGACGGGCACCTGCGGCCGGACGTAGGAGCCTTCACGCTTCACGGTGACGACCAGTCCCTCGCTCCGCAGCACCCCGAGTGCCTGCCGCACAGCCACCCGCCCCAGCTCGTACTCCTGCATCAGCCGAGTCTCTGAGGGGAGCGCCTGGCCAGGCTTCAGCCGGCCCGCTGCGATGTCTGCGCGGATGATGTCGGCGAGCTGGCGGTGCACCGGACGATCGGAACCGAAGTCGATCACAACAGGTCATCATCACAACCTCACT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42831-42373 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMJZ01000037.1 Nonomuraea longispora strain KC201 NODE_37_length_50979_cov_20.7262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 42830 30 100.0 31 .............................. GCGGCCGGGCGCCTGAGCTGTTCATCGCAGG 42769 30 100.0 31 .............................. GGCGCTCGGCCATCTTCTCCTTCCACCGCTC 42708 30 96.7 31 .............................C GGCAGCATGGCGAGCCGCGTGGGCTTCACGA 42647 30 100.0 31 .............................. TGGCCTCGTCCGGCGCGATTCGGAACGTTTT 42586 30 100.0 31 .............................. GCCACATCCCGCACACCTGGACGGTGGTGCC 42525 30 90.0 31 .C.....................A.....T CGTCGGGGTTGACGTCCGCGATCACGACCAG 42464 30 96.7 31 .............................A CCTCATGCCGCCCGACCAACTCTCCCCTTTT 42403 30 80.0 0 ........T..A.....T.....T...GA. | G [42379] ========== ====== ====== ====== ============================== =============================== ================== 8 30 95.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ATCGAGCAGATCGACACCGACGTCGACAGGCCCCGCCGAATGTTCCGTACCGGCAAGGTCTGGACCGGCCCCACCGCCAAGCAGTTCGACGCCCAACTCTCTGGGTTCAGCGCCCGGGCCCGAACCGCCGGGCAAGCGATCATGGACGAGTTGCGGCAGGCGCTAAGCCGCACGCCGAGCGAGGTTACCGAGGAGGAAGCCGCTTCCATCAAACGAAAGTACGGCCTCGGCTGATGCCAACGTGACCACCCCGCCGTTCGGGAACAACGGCAACGTTAGGTATGCCATGCAGTGTCCAGCCATGGACAACCGAGGTGCTCGACTCAGGTGATCGCCCGGGGTCTGTGCGCGCGGCCGTCGTCGTGCGACACTTCTGCCGCGTCTTCCGCAACTTGACGTGATCTCTTGCTCGCCAAGCTAGCCGAGAGTCCATAATGTCCAATTCAGTGAAAGTGCTCGGAAACAGCTTCTGTGCTCGATAAACCCGCAGGTCGTGGAGA # Right flank : CGACGCTCCACTGGCCCGTAGCGCTGGAGGCGCCCTCGCCCCTTGTTGGAGGTGTCTCCAGCGTTCGGTTGGCCTACCGCAGGGCCTCGGAGATGCGGCGCTTGGCGATCTCGTCTTGGCCGACGATGCACTTGGCGTAGATCCGCAGGAGCACGTCCACGCTGTGCCCCGCCCACTCGGCCACCTGGGGAGCCGGGACGCCTGCGTTGAGCCAGGTGGAGACGCAAGCGTGGCGGAGGTCGTACGGCCGGCGCGCCAGCGGAGATGAGAACTCCTTCGCGGTCAGCGCCGTCTTCCGTGCGGCCTTCCAAGCCCGTCTATAGGTGATGAACGGCAGTTCTCCGCCCCGCACGCCGTTGAAGAGGCGACCGTCTGTGTCATTGGCGAACTCGGCGAGATGGACGCGGAGGATGTGAACCAATGGTGGCGGGATCGGCACGGTTCTCCCATGACCTTGAGCACGGTGTTTGAGTGCACGCTCCTCGCGGGCCACGCCGCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 46852-46215 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMJZ01000037.1 Nonomuraea longispora strain KC201 NODE_37_length_50979_cov_20.7262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 46851 30 96.7 31 .............................C ACGACGACCACACCCCCGAGACCCAGCAGCA 46790 30 96.7 30 .............................C GGTCGATGACGCGGCCTCGGTGATCAGCTC 46730 30 100.0 31 .............................. GGTCGCCCATGGAGTTGACGAAGACCATGCG 46669 30 96.7 31 .............................G CCACAGCCACACCCGGCGTCGTCACAGCGGT 46608 30 93.3 31 ............................AC AGCCATGACCAGATCCTATCGGGCCTGGTCA 46547 30 96.7 31 .............................G CAGTGTTGGGCGAGGTCCGCTCGGGCCCAGC 46486 30 100.0 31 .............................. CCTACACGGTGCCGAGCAAGGGCGGCCAGTT 46425 30 96.7 31 .............................G TCGACCTGGTTAAGGCTGCCGTCCGTGGTGA 46364 30 100.0 31 .............................. TGCAGATCTTGGCCCGGCACATCAAGACCTG 46303 30 96.7 29 .........................G.... CCCTGGCGGGGACGTGTTCGACGGGTGGC 46244 30 73.3 0 ...A............T...CC...GTGT. | ========== ====== ====== ====== ============================== =============================== ================== 11 30 95.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : TGCCTTTACCGCAGCTCAGAACGCCCATAACCAACCCGACCAAACTCACCCCGGCTCCACGTCCCACGCAGTGCCAGACTTTCGCTAGGCTTACGAGGGTCCGCCTCCGTAGCTCAGGGGATAGAGCACCGCTCTCCTAAAGCGGGTGCCGCAGGTTCGAATCCTGCCGGGGGCACCAGGTTCAACCAGCATCAAAGCGCCCTTGACCAGCGGAAACGTCGGTCGAGGGCTTTTTGATGTGTCCGGTGGTGTGCGGCTGTGGATGATCGTTAGCGGGTGATCGTGCCAAATACGTGCGCAAAGCTCGGGCGGAGGCGAGCATGGAGCTGCACCGGACCGACACGCTCGCGGACGCGCTGCCGCTCAGCGGCGTGCAAGGCGTTGCTGGTTCACAGTTCCACCCGTCTCCATAGCCCTCCCAGGAGAGTGGCGAAATGTCCGATTCCGCGAAAGTGCTCAGAAATGGCCTCGGCTACCGGTAAAACCGCAGGTCGTGGAGG # Right flank : ACCCTCTACCTATAGGAGCGAACCCGCAGGACGCGCGCTGCGTACATCCTGGCGTCTCAGCAACTCACAGCCGAGAAATGACCATGCTGATGCGTTATGCGCCTCTCGCAAGAAAAATGCAGCCGGGGGACAATGCGATGGTCCTCGTAGGTGCTGGAGACTCGTCATGACGACCCCGCCATCGCCGCTTCCCCAGCCGTCACCTGAACGCCCGCAACCCGAACAGCCCGCCCATACCGACACGGAACCGGCACCTCCTTCCTTGACCCCGCCGGCGGTGGCACAGCCGCCCGACTGGGGGTATATGGGGATCGACCCGACGCTGATGCACGACTTCGAGCGTGACCTCGGCCAGGCGGAGAACACGCTCGGCCGCAACGAGCCGCAAATCCGGCGGATGCTGCAGAACCTCGACCTGGACACCTCGCGGCTGAACGCCATGCGGGAGCTGGGCAACTGGATCGGGGCCAAGCGGCCAGAGTTACGGCGCCGCAATGAGA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //