Array 1 144571-141818 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIJX01000002.1 Streptococcus suis strain SS1028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144570 36 100.0 30 .................................... ACGTATATGGGACAAGCGATGTCAAGGACT A [144562] 144503 36 100.0 30 .................................... TTTCTAAGGTAAATGGTAATGTTAAAACAT 144437 36 100.0 30 .................................... GCAATTTTCTTTACAAACTCCTACAGTAAC 144371 36 100.0 30 .................................... GCATGAACGCTGATAAGGGAGCTATTGAAA 144305 36 100.0 30 .................................... AGCGAGATGGTGCTCACAGAGCGAGTTGAA 144239 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG A [144232] 144173 36 100.0 30 .................................... GAGTCCATGAATTCCTTGGTGGCACCAGTA 144107 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 144041 36 100.0 30 .................................... CCCTTATGGAACACTTGTCTATGTTGATTT 143975 36 100.0 30 .................................... TTGTATCTGACAAATTGGTGATAGCTATTT 143909 36 100.0 30 .................................... TAAGAAAGACTTTAGAAAGATTGTGTTGCG 143843 36 100.0 30 .................................... TATCGCCCTTATCACCATATACACCAATAA 143777 36 100.0 30 .................................... TACTTTAACTTTACATGATAAAGATATTCA 143711 36 100.0 30 .................................... CCATTTGTTAGCAGGTAGCTAACATAGGTG 143645 36 100.0 30 .................................... AATATTTATTCCACTTTCAGCGCCAACAGT G [143637] 143578 36 100.0 30 .................................... TTTTGTCATTCTTAATCTGGAACTCGTTAT 143512 36 100.0 30 .................................... ATTAGTTGAAAAATGGCGTAAAGATGCTGA A [143505] 143445 36 100.0 30 .................................... TCCCTGTCCAAGAAATCGGACAAGACCTGA 143379 36 100.0 30 .................................... AATCTTCTATTACATTAGACTTGGGCGGTC A [143372] 143312 36 100.0 30 .................................... CACTTCTTTCTTGTGATGCACCATATCTGC 143246 36 100.0 30 .................................... ATTCATTTTTAGGTTTAAATTCAAGCGGAA 143180 36 100.0 30 .................................... CTGAAGATAACAAACCGAACACGTCTCCTA A [143173] 143113 36 100.0 30 .................................... ACTAACAACATTACAGCTATCGTTCCAGCT A [143106] 143046 36 100.0 30 .................................... CAAGCAAAAAGCAAAAGGCTACATTTTCCT 142980 36 100.0 30 .................................... GTTACATTTACAATATTATTATTAGACATT 142914 36 100.0 30 .................................... CGTAAACACGTGAGAAGCGTTGATACATAA G [142906] 142847 36 100.0 30 .................................... AAGCGAGAATTAGACAACCATTGACGGTCT T [142837] 142780 36 100.0 30 .................................... AGCCTTTCCAATTTTCTAAACATTGACATT A [142773] 142713 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 142647 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA A [142640] 142580 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 142514 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 142448 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 142382 36 100.0 30 .................................... TACTATTGCAGATGCTACAAACTACGCTAT 142316 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG A [142309] 142250 36 100.0 30 .................................... TCAGACGGCTGTTTGCAATCAGTAACATCA 142184 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 142118 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 142052 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG A [142045] 141986 36 100.0 30 .................................... CTGTAAATGTGTAGCTTATCCAACAGCTTT 141920 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT A [141913] 141853 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : TTTAGAAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-762 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIJX01000024.1 Streptococcus suis strain SS1028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... TCGCTTCCTCTTTCGGCGGACTAAGAGTCT 67 36 100.0 30 .................................... TAGCCATATACTTCAGATACGAGGTCCGAT 133 36 100.0 30 .................................... AGCGAGATGGTGCTCACAGAGCGAGTTGAA 199 36 100.0 30 .................................... GAATGAATAAAAATGTAATATAGTCTGACT 265 36 100.0 30 .................................... TCAACAATATTGTCAATATGTATGTTACTA 331 36 100.0 30 .................................... CCTGCATCAGCTTTAACTGTTTTAGGTCTA 397 36 100.0 30 .................................... GGTTTAGTGAACATAAAACCATCTCCCAAA 463 36 100.0 30 .................................... CAAAAGCGAGCTAACACGGTCGTTTGTGCA 529 36 100.0 30 .................................... GCATCATTGGGAAATTAGATATTAAAGACG 595 36 100.0 30 .................................... CCCTTATGGAACACTTGTCTATGTTGATTT 661 36 100.0 30 .................................... TACAGAGAACTTTGACGCCTCTACCCCAGT 727 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : | # Right flank : GAGTCCATGAATTCCTTGGTGGCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //