Array 1 443801-445620 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRM01000003.1 Listeria monocytogenes strain FSL S10-2161 NODE_3_length_450556_cov_92.043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 443801 36 100.0 30 .................................... TTATCATACATTAGCCACTATCAGAACAGT 443867 36 100.0 30 .................................... TTTATTTAGTATTGTGTTGCAACACAAAGC 443933 36 100.0 30 .................................... TGTGGCGGTTGGGTCTTGGTGTCGGTTTTA 443999 36 100.0 30 .................................... TTAAGTCGACCACTTTTTCCCGCTCTGTGA 444065 36 100.0 30 .................................... GAAGATGAGAAGCGTTCCAAGTTACAAACA 444131 36 100.0 30 .................................... CAAACAAGCTAAGGCCCTGAATAGTATTGA 444197 36 100.0 30 .................................... TCAAGTATCAGCTACAACATATCTAAGTTT 444263 36 100.0 30 .................................... AGAAGTTACGTAAAGAAATGATTGACTATG 444329 36 100.0 30 .................................... AATCAGTTAGGGGATATATTTATCATTCGA 444395 36 100.0 31 .................................... TATCTCCTTTCTTCAAAGCCACATAGCAGTA 444462 36 100.0 30 .................................... GGAAAAATTAGAATTAACTACATCTAAAAA 444528 36 100.0 30 .................................... ATTCCTGTAGTCATCAGTGTTCCAGTAGAT 444594 36 100.0 30 .................................... TCAATGCCTCGCAAGCTGCCGTAGTACGCT 444660 36 100.0 31 .................................... AGAGTCAGCAGAGTTACGGGTCTTACAATTG 444727 36 100.0 30 .................................... AAGCGTTACAAGTGTTACACAGAGCTATGA 444793 36 100.0 30 .................................... GTTCAATGTACCGCTTGAGGAAGTAACTAA 444859 36 100.0 30 .................................... CAATGGCAACTTAGGAGTTTTCAGCTACTA 444925 36 100.0 30 .................................... AAATTCATGTGCGAATAAATAGGTGCTTTC 444991 36 100.0 30 .................................... GAACAATTATAGATTGGTTCGGTTCAAGGA 445057 36 97.2 30 ................T................... ATAATGTTGCTAAAATTAATAAAACGGCTA 445123 36 100.0 30 .................................... TAAGAGAGTCAAGGCTTCCAAGTTTCGTGT 445189 36 100.0 30 .................................... TCTTTGGGATTTTTCTACAAATGTGTGTCC 445255 36 100.0 30 .................................... AACACTAGTCGAAGTAGAAGGCTTCCAATA 445321 36 100.0 30 .................................... TTTGGGTACGCATAGTATGCGAAAAACCTT 445387 36 100.0 30 .................................... TCAAGCCGCATTCAATCAAAGTATTCAAAC 445453 36 100.0 30 .................................... GAAAACTTTGTGGATCGTGCAGAAAAAATA 445519 36 100.0 30 .................................... CAAGAAGAGGGAAAGCTTAAGTATCCATTT 445585 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTAATATTCTCCCCCCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATTAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAATAAAATAAAACGAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATCCCTTGCCTTGGTGTGAACTCCAGGGTTTATAATTCTATATGTAAAGAACGAAACGAGGTGATGGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 290273-290885 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRM01000001.1 Listeria monocytogenes strain FSL S10-2161 NODE_1_length_1291948_cov_79.0302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 290273 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 290339 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 290402 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 290466 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 290531 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 290595 29 100.0 36 ............................. CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 290660 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 290725 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 290791 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [290814] 290857 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 94.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACTGGGGATCGACAGAAAGTTGTAAATGTTTGGGGGAAGGGGAATTTGGCGGTTTTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTACAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //