Array 1 391-796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIR010000013.1 Thermoactinomyces intermedius strain s-9 Scaffolds_13_63820, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 391 36 100.0 35 .................................... ATTTTGGTAGTGTTTTCGGATGTTTTTTCAACCGT 462 36 100.0 41 .................................... CCTAGTAGTTCGTCAACTTCCTTCTTTTGTTCGTCCGTTAG 539 36 100.0 36 .................................... TTATTAACAGGCTCACTGGTGTACTACCACTACACC 611 36 100.0 39 .................................... CTTCCAAACAAACAACTTTTCTGTATATAGCATAGTTCC 686 36 100.0 39 .................................... ACCCAAACCTCGTTCAGATCCTTACATCCCTGATACACT 761 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 99.5 38 GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : AATGGGAATCTTCCGCAAGGATAAACAAAAAGAAATGTCAGCATGAACCTAAAGGTGGGATTTTCCTCTTCTGGAGGATTACAAAAACAGCCCTCTCCGGGAAATGGAGAGGGCTTTAATATTAGAACTGAAGGTTTACAAGAATTTTATTTTTTTGTAGACTGAAATTAGTTGATATTTTTGATGTTCATACAAGGATTTATCGAGCGCCTTGATATGTCAAAAATCCCCGGGGTTGCTCGTAAAAGCTGAAACCCGCATGAAATAAAGGAAAAAGCCACTTCGTTTTGACTTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACCATATTGAACCTCAAGCGTGTCAAGGGTTTCAGACGCATGCAG # Right flank : CAAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGCCCAGGCATATGGAGATAATGGAACGGATCGGCCAATAATTTATCAAATTGACGGCTGACTGAATGATATCCGATCGCATATGCACCGAGCCTCGGAGCCCAGGCAGCATAACACCGGCAAGCATTGATGACACGTTGCTTGATAGTGTTATCCGTGGGAGTATCTTTCCAACCGCCGCCAGGAATCGCTGCGCCACGGGATTCATAGTCATCCCTTGTGGCCATACTGATGATAAAGCGGACATAATATTGAATTGCCCCTTCATCATAGAGATCCTGCAAAGCTTGTCCACATGCTGCATGGTCCTGGATGGATATCGTGATAACTCAAGGTATAGTGGTCCGCATCCGGATAAAGGTCAATATACTTTTGAATTATGTTTTTCGCTTCATTCACCGTTACACTTTCCCCGCCGTCGCTGTTCGGATCATCAAGATATTCAATATGCTGATTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 63758-63567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEIR010000013.1 Thermoactinomyces intermedius strain s-9 Scaffolds_13_63820, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 63757 36 100.0 47 .................................... AATTCACCTTCACAAGCCAGTGTTGCGAATGTCGCCCCGCTGCTTTT 63674 36 100.0 36 .................................... ATCAGTCTACGAAGATTCTGCTTCGCCCTTCGGCTC 63602 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 3 36 100.0 42 GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : AAACGAAGGTGCTCGAAAAACGATATTGAACCTCAAGCGTGTCAAGGGTTTCAGACGCATGC # Right flank : CCTTCTTGGCAACTATAAATATTTTCGTCTTAGATTTTAAAGTTCGGTAAGTCAAATAGATTAAAATGCCTAAAAAAGTTGAACCAATCCAAATAGTTAAACCATAATTATCAACTAGTTTTTTCCAATCAAAAACCCAAAAATAGAGAATAGTTATGTGACAGATCACCAATAGCAATGTTATTGAAGGTAATATTATCCTCTGAAATATCATTTATCATACCTCCTATGTAGATTTATAACTTTTTAACAAAAAATTACCATAACTTTATATTTTAAACCCGTGGTGCTAGTTGAGCGTTAAGACTCAACTAGCACCACGGGTCATTAATATTGTTTTGTTATGTTATCGATAGCTAAATTCCAAAATATAGTCTATTACTTTTGCAGAAAAAGCCACGCCGGTCTTTTCGGCTGACCGCCTCCTTGCCTATGGCAATCTGGCTGAAGCCTGCAAAGACCGGCGCTCGGTCTGTTCAATGAAGCACGGTGCAAGCGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //