Array 1 1401111-1399374 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQAI02000001.1 Escherichia coli strain ECCTRPRTH03 ECCTRPRTH03_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1401110 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 1401049 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 1400988 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 1400927 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 1400866 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 1400805 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 1400744 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 1400683 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 1400622 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 1400561 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 1400500 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 1400439 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 1400378 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 1400317 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 1400256 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 1400195 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 1400134 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 1400073 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 1400012 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 1399951 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 1399890 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 1399829 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 1399768 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 1399707 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 1399646 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1399585 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 1399524 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 1399463 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 1399402 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1427754-1426810 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQAI02000001.1 Escherichia coli strain ECCTRPRTH03 ECCTRPRTH03_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1427753 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 1427692 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 1427631 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 1427570 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1427509 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 1427448 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 1427387 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 1427326 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 1427265 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 1427204 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 1427143 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1427082 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1427021 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1426960 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1426899 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1426838 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //