Array 1 282061-282359 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEHV01000004.1 Staphylococcus sp. B2-b contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 282061 33 100.0 33 ................................. AACTGGTCAAATGGAATTATGGTCATCAGTGTA 282127 33 100.0 33 ................................. AACGAGTTATTAATTCTTAATACTTACCATCTA 282193 33 100.0 33 ................................. AACATTATACACAATTTTCGGATACATCCAGTA 282259 33 100.0 33 ................................. AACTGAATAAGAAAGCATTCCTAAGCCAGTATT 282325 32 87.9 0 ....................G.-A........T | T,AA [282351,282354] ========== ====== ====== ====== ================================= ================================= ================== 5 33 97.6 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTGCGACCAGGGCAAGGCTATGTACATCATGTCGCAGTCAATCTACCTACAGATATAGACTTAAACGATATTTATGAGAAAATAGCACGACAACCTAACCCTAACTCCGGCATCATCGATCGATACTTCTTCAAATCATTATACTATCGACATAACCAAATCCTATTCGAATTTGCGACAGCAGAGCCAGGGTTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGACAAAAGAGACGAAATCGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAGTATGTATTACTAAAATTTTTAGTAGTAAAGATTTATACGCTAGAG # Right flank : TAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGACAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTTGTTTTAGAACAACTTATGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAAATTATAGATGCAGGAGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGACGAAGAATACATAGATTAGAACGAGTAAAATTATTACTCACAGAATATGACCTAATAAATAAAGAACAAATACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 288035-289059 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEHV01000004.1 Staphylococcus sp. B2-b contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 288035 33 100.0 33 ................................. AACACAGTGGTTGGTTACCCTTAACATTAGTAA 288101 33 100.0 33 ................................. AACCATCAACAACTAGCTTAAATTGTTTACCTG 288167 33 100.0 33 ................................. AACCGTCGGCTTTTTATTTTAGGAGTTGAAAAT 288233 33 100.0 33 ................................. AACTAATTTATACATCGAGAATTCACATCATGA 288299 33 100.0 33 ................................. AACAAATTATTTGGTTTGCACTTTTAAATACTA 288365 33 100.0 33 ................................. AACTAAAAGAGGGAACTTGGCGTACCGAAGAGA 288431 33 100.0 33 ................................. AACGGTATGGCGCTAACGGTTGGACAGGTTCTC 288497 33 100.0 33 ................................. AACAAAGATGGAGAAATATTAGACCCGGTGAAT 288563 33 100.0 33 ................................. AACTACAATAGAACGTACTTGCGACTTTCTCAT 288629 33 100.0 33 ................................. AACACGGTATTGTAGGCGAACCTGTCGACCAAG 288695 33 100.0 33 ................................. AACGGTATGGCGCTAACGGTTGGACAGGTTCTC 288761 33 100.0 33 ................................. AACACGGTATTGTAGGCGAACCTGTCGACCAAG 288827 33 100.0 33 ................................. AACCAAACACCTAATGTTAAAGCGTCTTCAGGT 288893 33 100.0 33 ................................. AACGAATTAGGCTTTATCACTAACAAAACCGAC 288959 33 100.0 33 ................................. AACCTGAGGCAGAAATTAATAAAATGCAGCAAT 289025 33 100.0 0 ................................. | A,A [289053,289057] ========== ====== ====== ====== ================================= ================================= ================== 16 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTGAGGATTGGAAATATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAGGATAAAATTGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTCAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACTGTCTATATAATAAATGATAAAAATAAGTCTGATCACTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACTATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTTATAGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAGTATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGCAAACTTTTTCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //