Array 1 89011-87543 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMZ01000009.1 Photobacterium phosphoreum strain FS-1.1 CFSAN065479_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89010 28 100.0 32 ............................ ATGCGTTTAGATTGCTGACACTGGTAACGCTG 88950 28 100.0 32 ............................ TCGTTTCAGTGACTCAGAGCGACACCATGCAC 88890 28 100.0 32 ............................ ATGATCAATGTAAATGCAAACTGTGACGGTAA 88830 28 100.0 32 ............................ TAACGAGCCGCTATACAGTGTTGACGTTGAAT 88770 28 100.0 33 ............................ AAGAGCGCCAAAATGTTGAGATTGAGATTCAAA 88709 28 100.0 32 ............................ AATCGGTGATGAACCAAGCCACAGCTTAACAG 88649 28 100.0 32 ............................ ATATAATCAACACCTGTTTCTGAATCGTGTTC 88589 28 100.0 32 ............................ TCGCTTCGGCGGGGTTTTTTTATGCCTGTAAT 88529 28 100.0 32 ............................ AGTCGCATCTTTTACAGTTGGCCATGACGCAA 88469 28 100.0 32 ............................ ACAACAATGAGGTTGATCTAAAAAATCATTAT 88409 28 100.0 32 ............................ GCAGAAAATGGACGTATTAAGATCACATTTTC 88349 28 100.0 32 ............................ AACTGAATGGTTGCTAGCTGATCTTGAAGGTC 88289 28 100.0 32 ............................ CCGATATGCCGCAAATGCTGACGAACGTTATC 88229 28 100.0 32 ............................ ACAACGAGCGGCATGGACTCACTGAAGGGTGG 88169 28 100.0 32 ............................ TCCATCGCGCGAGTCGCTTTGTCGAGGTTGTC 88109 28 100.0 32 ............................ GAAAACAATTGAAATCCCTATGGGTCATTTCT 88049 28 100.0 32 ............................ GTACAGCTGTTACCGTTGTATCCAAAAACGCA 87989 28 100.0 32 ............................ AAACAACACTGTGACTATCCGCGAAGTAAACG 87929 28 100.0 32 ............................ TAAACGTGTTAAATCAAAAGACTTACAGCGCA 87869 28 100.0 32 ............................ AAGCAATCTAAGCCGATCATCATTGAGGGCTT 87809 28 100.0 32 ............................ CTAAATCAATAAGAAATGAAGCAATTGACCTT 87749 28 100.0 32 ............................ TCAGTCAGAATCGACTTTGCAAGAATTAGCAC 87689 28 100.0 32 ............................ CTATTGTTAAATCTATTGGCAATAAAGCGGCT 87629 28 100.0 32 ............................ AGGCGCAGAACTTACCCACTGACGGAAAAAAA 87569 27 82.1 0 ...........T........T..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTGGCTGAAAATAAGGGCGTTCCGCCACCACCGCAAAAACCAACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATGGCGGTCGTGTTTGCTATAGGGATATTCCAATATAACGATTGTTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACACGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAACGCATTATATACATAGATACACATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAATATCAGTTAAAAAAAGGGTTTTTGGTAGGAATTTACTGTTTGGCTTTTATAAGCAATCACTTATACTAACTTTGCTCCA # Right flank : TACTGGCAGCAGCCATGGCTTCTTTTATTTCATCTGAACCATAACCTTTTGATGAAAGATAAGCATAGGCTTTACTTTTATCTTTAAAATTCGACAGGTCAAACCGCTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGGTTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTAATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAGCGTATCGGCAGCATCATGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 97544-98291 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMZ01000009.1 Photobacterium phosphoreum strain FS-1.1 CFSAN065479_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97544 28 100.0 32 ............................ TCATTGCCTGTAACACCATCAGAGTTGATCAT 97604 28 100.0 32 ............................ ACGGCATTAGCATCAAAGATTATCGGTTTACT 97664 28 100.0 32 ............................ TGAGCAATTAGGATAAATCCAGCCTTGTTCCT 97724 28 100.0 32 ............................ TAGGTTATCACCAATAACTTGCCAGAAATCAA 97784 28 100.0 32 ............................ TAAATGTTCAGCCGTAAAAACACTTCCTTTAA 97844 28 100.0 32 ............................ TAATTGCTCTTTTGCCTTTCGCTCTGATAGCT 97904 28 100.0 32 ............................ TTGCTGGTGTTCATGCCACAATGGACGATGTG 97964 28 100.0 32 ............................ TTACAATTTTTGAATTCATTGTATTTGAAGAT 98024 28 100.0 32 ............................ GCCAAATAATCAGACGGTTTAATTAAAACATC 98084 28 100.0 32 ............................ TGTTAAAAATGAAGTCATTCAGCTTTCAGATT 98144 28 100.0 32 ............................ CCGGTTTAGTTAGTTAGTTAGCGACAATCATT 98204 28 100.0 32 ............................ TCGCAAGTGTATTGGGATTACGACCTTGGTTT 98264 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACCCGTGTTACGACTATTACGGCAATTCCGAGTGACATCAAAGGTTATCAAACCGTCAAGCGTGTGCAGACCAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCCATTCCTGATACAGCAGAGCGTAAGTTAACGTTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTGGTGAGTGATGCAACGGATGGTGTATTTAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTTTTGTTTTAATCGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTCGTTGCATTTAAAATCAATGAGTTATAAGTGATGAATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTTAGCTTCA # Right flank : ATAACTAAAGTACACCGCGAACGTATTCTGCTTATTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCCATCTGACAAACACAAAACATTTCGCTAATAAACCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCATACAGAGCTGAGATTGTGTATGGCGTCACACCGAATACGTTGAATCGTTACGTTAAAAAATTCAATGCCGAGTTAACTTATTTACAAGCTTTAGGTTTAAAAGCAAAATAAGTGATGTAAAGTCCAGTACCTACTGGACTTTACATCAGTGTGATAATGCTGCTTCATTATTCTCTCGTTCAAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //